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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 83, 266, 1020 |
| AccBSI | CCGCTC | 1 cut(s) | 63 |
| AccI | GTMKAC | 2 cut(s) | 97, 552 |
| AccII | CGCG | 6 cut(s) | 169, 317, 340, 636, 645, 673 |
| AclI | AACGTT | 1 cut(s) | 782 |
| AclWI | GGATC | 2 cut(s) | 167, 767 |
| AcoI | YGGCCR | 4 cut(s) | 299, 654, 704, 888 |
| AcyI | GRCGYC | 3 cut(s) | 84, 187, 1021 |
| AgsI | TTSAA | 2 cut(s) | 871, 953 |
| AluBI | AGCT | 7 cut(s) | 325, 363, 491, 507, 566, 739, 939 |
| AluI | AGCT | 7 cut(s) | 325, 363, 491, 507, 566, 739, 939 |
| Alw21I | GWGCWC | 3 cut(s) | 327, 509, 741 |
| Alw26I | GTCTC | 1 cut(s) | 795 |
| AlwI | GGATC | 2 cut(s) | 167, 767 |
| Ama87I | CYCGRG | 3 cut(s) | 245, 681, 798 |
| AoxI | GGCC | 7 cut(s) | 157, 219, 299, 654, 704, 815, 888 |
| ApaI | GGGCCC | 1 cut(s) | 161 |
| ApeKI | GCWGC | 3 cut(s) | 56, 375, 378 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 461, 493, 493, 525 |
| AspLEI | GCGC | 5 cut(s) | 86, 317, 636, 860, 1023 |
| AspS9I | GGNCC | 7 cut(s) | 152, 157, 158, 220, 438, 794, 816 |
| AsuC2I | CCSGG | 8 cut(s) | 156, 246, 247, 332, 653, 658, 810, 1037 |
| AsuHPI | GGTGA | 1 cut(s) | 813 |
| AvaI | CYCGRG | 3 cut(s) | 245, 681, 798 |
| AvaII | GGWCC | 3 cut(s) | 152, 438, 794 |
| BaeGI | GKGCMC | 2 cut(s) | 161, 271 |
| BalI | TGGCCA | 1 cut(s) | 301 |
| BanI | GGYRCC | 3 cut(s) | 83, 266, 1020 |
| BanII | GRGCYC | 6 cut(s) | 161, 327, 509, 642, 679, 741 |
| BauI | CACGAG | 1 cut(s) | 983 |
| BbsI | GAAGAC | 1 cut(s) | 756 |
| Bbv12I | GWGCWC | 3 cut(s) | 327, 509, 741 |
| BbvI | GCAGC | 3 cut(s) | 43, 387, 390 |
| BccI | CCATC | 2 cut(s) | 198, 428 |
| BceAI | ACGGC | 1 cut(s) | 413 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 38, 72, 456, 490, 552, 586, 901, 935 |
| BcnI | CCSGG | 8 cut(s) | 156, 246, 247, 332, 653, 658, 810, 1037 |
| BcoDI | GTCTC | 1 cut(s) | 795 |
| BfaI | CTAG | 3 cut(s) | 360, 827, 900 |
| BfoI | RGCGCY | 3 cut(s) | 87, 861, 1024 |
| BglII | AGATCT | 1 cut(s) | 356 |
| BisI | GCNGC | 8 cut(s) | 57, 167, 318, 376, 379, 592, 1019, 1046 |
| BlsI | GCNGC | 8 cut(s) | 58, 168, 319, 377, 380, 593, 1020, 1047 |
| Bme1390I | CCNGG | 8 cut(s) | 156, 246, 247, 332, 653, 658, 810, 1037 |
| Bme18I | GGWCC | 3 cut(s) | 152, 438, 794 |
| BmeT110I | CYCGRG | 3 cut(s) | 245, 681, 798 |
| BmgT120I | GGNCC | 7 cut(s) | 152, 157, 158, 220, 438, 794, 816 |
| BmiI | GGNNCC | 8 cut(s) | 6, 73, 85, 159, 268, 439, 529, 1022 |
| BmrFI | CCNGG | 8 cut(s) | 156, 246, 247, 332, 653, 658, 810, 1037 |
| BmsI | GCATC | 5 cut(s) | 415, 527, 578, 699, 1032 |
| BpiI | GAAGAC | 1 cut(s) | 756 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 949, 981 |
| Bpu10I | CCTNAGC | 1 cut(s) | 414 |
| BpuEI | CTTGAG | 1 cut(s) | 1034 |
| BpuMI | CCSGG | 8 cut(s) | 156, 246, 247, 332, 653, 658, 810, 1037 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 423 |
| BsaBI | GATNNNNATC | 1 cut(s) | 771 |
| BsaHI | GRCGYC | 3 cut(s) | 84, 187, 1021 |
| BsaJI | CCNNGG | 5 cut(s) | 245, 246, 330, 429, 862 |
| BsaWI | WCCGGW | 1 cut(s) | 916 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bse118I | RCCGGY | 4 cut(s) | 617, 630, 702, 890 |
| Bse3DI | GCAATG | 2 cut(s) | 302, 732 |
| Bse8I | GATNNNNATC | 1 cut(s) | 771 |
| BseCI | ATCGAT | 2 cut(s) | 27, 423 |
| BseDI | CCNNGG | 5 cut(s) | 245, 246, 330, 429, 862 |
| BseGI | GGATG | 2 cut(s) | 439, 874 |
| BseJI | GATNNNNATC | 1 cut(s) | 771 |
| BseMI | GCAATG | 2 cut(s) | 302, 732 |
| BseRI | GAGGAG | 4 cut(s) | 116, 357, 598, 745 |
| BseSI | GKGCMC | 2 cut(s) | 161, 271 |
| BseX3I | CGGCCG | 3 cut(s) | 654, 704, 888 |
| BseXI | GCAGC | 3 cut(s) | 43, 387, 390 |
| Bsh1236I | CGCG | 6 cut(s) | 169, 317, 340, 636, 645, 673 |
| Bsh1285I | CGRYCG | 3 cut(s) | 657, 707, 891 |
| BshFI | GGCC | 7 cut(s) | 159, 221, 301, 656, 706, 817, 890 |
| BshNI | GGYRCC | 3 cut(s) | 83, 266, 1020 |
| BshVI | ATCGAT | 2 cut(s) | 27, 423 |
| BsiEI | CGRYCG | 3 cut(s) | 657, 707, 891 |
| BsiHKAI | GWGCWC | 3 cut(s) | 327, 509, 741 |
| BsiHKCI | CYCGRG | 3 cut(s) | 245, 681, 798 |
| BslFI | GGGAC | 2 cut(s) | 451, 991 |
| BsmAI | GTCTC | 1 cut(s) | 795 |
| BsmFI | GGGAC | 2 cut(s) | 451, 991 |
| BsmI | GAATGC | 2 cut(s) | 90, 377 |
| BsnI | GGCC | 7 cut(s) | 159, 221, 301, 656, 706, 817, 890 |
| BsoBI | CYCGRG | 3 cut(s) | 245, 681, 798 |
| Bsp120I | GGGCCC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 7 cut(s) | 161, 271, 327, 509, 642, 679, 741 |
| Bsp143I | GATC | 4 cut(s) | 28, 172, 356, 772 |
| Bsp68I | TCGCGA | 2 cut(s) | 340, 673 |
| BspANI | GGCC | 7 cut(s) | 159, 221, 301, 656, 706, 817, 890 |
| BspDI | ATCGAT | 2 cut(s) | 27, 423 |
| BspFNI | CGCG | 6 cut(s) | 169, 317, 340, 636, 645, 673 |
| BspLI | GGNNCC | 8 cut(s) | 6, 73, 85, 159, 268, 439, 529, 1022 |
| BspPI | GGATC | 2 cut(s) | 167, 767 |
| BspQI | GCTCTTC | 1 cut(s) | 514 |
| BspT107I | GGYRCC | 3 cut(s) | 83, 266, 1020 |
| BsrBI | CCGCTC | 1 cut(s) | 63 |
| BsrDI | GCAATG | 2 cut(s) | 302, 732 |
| BsrFI | RCCGGY | 4 cut(s) | 617, 630, 702, 890 |
| BssAI | RCCGGY | 4 cut(s) | 617, 630, 702, 890 |
| BssECI | CCNNGG | 5 cut(s) | 245, 246, 330, 429, 862 |
| BssMI | GATC | 4 cut(s) | 28, 172, 356, 772 |
| BssNI | GRCGYC | 3 cut(s) | 84, 187, 1021 |
| BssSI | CACGAG | 1 cut(s) | 983 |
| Bst2BI | CACGAG | 1 cut(s) | 983 |
| Bst4CI | ACNGT | 4 cut(s) | 497, 866, 1005, 1068 |
| Bst6I | CTCTTC | 3 cut(s) | 514, 763, 948 |
| BstACI | GRCGYC | 3 cut(s) | 84, 187, 1021 |
| BstDEI | CTNAG | 1 cut(s) | 414 |
| BstDSI | CCRYGG | 2 cut(s) | 429, 862 |
| BstEII | GGTNACC | 1 cut(s) | 730 |
| BstF5I | GGATG | 2 cut(s) | 439, 874 |
| BstFNI | CGCG | 6 cut(s) | 169, 317, 340, 636, 645, 673 |
| BstH2I | RGCGCY | 3 cut(s) | 87, 861, 1024 |
| BstHHI | GCGC | 5 cut(s) | 86, 317, 636, 860, 1023 |
| BstKTI | GATC | 4 cut(s) | 31, 175, 359, 775 |
| BstMAI | GTCTC | 1 cut(s) | 795 |
| BstMBI | GATC | 4 cut(s) | 28, 172, 356, 772 |
| BstMCI | CGRYCG | 3 cut(s) | 657, 707, 891 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 227, 642, 823, 849, 896, 905 |
| BstNSI | RCATGY | 1 cut(s) | 385 |
| BstPI | GGTNACC | 1 cut(s) | 730 |
| BstSCI | CCNGG | 8 cut(s) | 154, 244, 245, 330, 651, 656, 808, 1035 |
| BstSLI | GKGCMC | 2 cut(s) | 161, 271 |
| BstUI | CGCG | 6 cut(s) | 169, 317, 340, 636, 645, 673 |
| BstV1I | GCAGC | 3 cut(s) | 43, 387, 390 |
| BstV2I | GAAGAC | 1 cut(s) | 756 |
| BstX2I | RGATCY | 2 cut(s) | 172, 356 |
| BstYI | RGATCY | 2 cut(s) | 172, 356 |
| BstZI | CGGCCG | 3 cut(s) | 654, 704, 888 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 423 |
| BsuRI | GGCC | 7 cut(s) | 159, 221, 301, 656, 706, 817, 890 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 423 |
| BtgI | CCRYGG | 2 cut(s) | 429, 862 |
| BtgZI | GCGATG | 3 cut(s) | 176, 824, 1055 |
| BtsCI | GGATG | 2 cut(s) | 439, 874 |
| BtsIMutI | CAGTG | 1 cut(s) | 1001 |
| BtuMI | TCGCGA | 2 cut(s) | 340, 673 |
| CfoI | GCGC | 5 cut(s) | 86, 317, 636, 860, 1023 |
| Cfr10I | RCCGGY | 4 cut(s) | 617, 630, 702, 890 |
| Cfr13I | GGNCC | 7 cut(s) | 152, 157, 158, 220, 438, 794, 816 |
| Cfr9I | CCCGGG | 1 cut(s) | 245 |
| ClaI | ATCGAT | 2 cut(s) | 27, 423 |
| CpoI | CGGWCCG | 1 cut(s) | 152 |
| CseI | GACGC | 1 cut(s) | 195 |
| CspI | CGGWCCG | 1 cut(s) | 152 |
| CviAII | CATG | 3 cut(s) | 146, 303, 382 |
| DdeI | CTNAG | 1 cut(s) | 414 |
| DinI | GGCGCC | 2 cut(s) | 85, 1022 |
| DpnI | GATC | 4 cut(s) | 30, 174, 358, 774 |
| DpnII | GATC | 4 cut(s) | 28, 172, 356, 772 |
| EaeI | YGGCCR | 4 cut(s) | 299, 654, 704, 888 |
| EagI | CGGCCG | 3 cut(s) | 654, 704, 888 |
| Eam1104I | CTCTTC | 3 cut(s) | 514, 763, 948 |
| EarI | CTCTTC | 3 cut(s) | 514, 763, 948 |
| EciI | GGCGGA | 3 cut(s) | 217, 335, 592 |
| Ecl136II | GAGCTC | 3 cut(s) | 325, 507, 739 |
| EclXI | CGGCCG | 3 cut(s) | 654, 704, 888 |
| Eco24I | GRGCYC | 6 cut(s) | 161, 327, 509, 642, 679, 741 |
| Eco47I | GGWCC | 3 cut(s) | 152, 438, 794 |
| Eco52I | CGGCCG | 3 cut(s) | 654, 704, 888 |
| Eco53kI | GAGCTC | 3 cut(s) | 325, 507, 739 |
| Eco88I | CYCGRG | 3 cut(s) | 245, 681, 798 |
| Eco91I | GGTNACC | 1 cut(s) | 730 |
| EcoICRI | GAGCTC | 3 cut(s) | 325, 507, 739 |
| EcoO109I | RGGNCCY | 2 cut(s) | 794, 816 |
| EcoO65I | GGTNACC | 1 cut(s) | 730 |
| EcoT38I | GRGCYC | 6 cut(s) | 161, 327, 509, 642, 679, 741 |
| EgeI | GGCGCC | 2 cut(s) | 85, 1022 |
| EheI | GGCGCC | 2 cut(s) | 85, 1022 |
| FaeI | CATG | 3 cut(s) | 149, 306, 385 |
| FaqI | GGGAC | 2 cut(s) | 451, 991 |
| FatI | CATG | 3 cut(s) | 145, 302, 381 |
| FauI | CCCGC | 7 cut(s) | 68, 95, 582, 650, 703, 705, 707 |
| FblI | GTMKAC | 2 cut(s) | 97, 552 |
| Fnu4HI | GCNGC | 8 cut(s) | 57, 167, 318, 376, 379, 592, 1019, 1046 |
| FokI | GGATG | 2 cut(s) | 446, 861 |
| FriOI | GRGCYC | 6 cut(s) | 161, 327, 509, 642, 679, 741 |
| Fsp4HI | GCNGC | 8 cut(s) | 57, 167, 318, 376, 379, 592, 1019, 1046 |
| FspBI | CTAG | 3 cut(s) | 360, 827, 900 |
| GlaI | GCGC | 5 cut(s) | 85, 316, 635, 859, 1022 |
| GluI | GCNGC | 8 cut(s) | 57, 167, 318, 376, 379, 592, 1019, 1046 |
| HaeII | RGCGCY | 3 cut(s) | 87, 861, 1024 |
| HaeIII | GGCC | 7 cut(s) | 159, 221, 301, 656, 706, 817, 890 |
| HgaI | GACGC | 1 cut(s) | 195 |
| HhaI | GCGC | 5 cut(s) | 86, 317, 636, 860, 1023 |
| Hin1I | GRCGYC | 3 cut(s) | 84, 187, 1021 |
| Hin1II | CATG | 3 cut(s) | 149, 306, 385 |
| Hin6I | GCGC | 5 cut(s) | 84, 315, 634, 858, 1021 |
| HinP1I | GCGC | 5 cut(s) | 84, 315, 634, 858, 1021 |
| HincII | GTYRAC | 1 cut(s) | 397 |
| HindII | GTYRAC | 1 cut(s) | 397 |
| HinfI | GANTC | 3 cut(s) | 241, 752, 913 |
| HphI | GGTGA | 1 cut(s) | 813 |
| Hpy166II | GTNNAC | 3 cut(s) | 98, 397, 553 |
| Hpy188I | TCNGA | 2 cut(s) | 182, 236 |
| Hpy188III | TCNNGA | 9 cut(s) | 32, 136, 339, 612, 672, 683, 800, 1008, 1051 |
| Hpy8I | GTNNAC | 3 cut(s) | 98, 397, 553 |
| Hpy99I | CGWCG | 2 cut(s) | 189, 1068 |
| HpyAV | CCTTC | 2 cut(s) | 807, 826 |
| HpyCH4III | ACNGT | 4 cut(s) | 497, 866, 1005, 1068 |
| HpyCH4IV | ACGT | 2 cut(s) | 549, 782 |
| HpyCH4V | TGCA | 3 cut(s) | 375, 389, 922 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 227, 642, 823, 849, 896, 905 |
| HpyF3I | CTNAG | 1 cut(s) | 414 |
| HpySE526I | ACGT | 2 cut(s) | 549, 782 |
| Hsp92I | GRCGYC | 3 cut(s) | 84, 187, 1021 |
| Hsp92II | CATG | 3 cut(s) | 149, 306, 385 |
| HspAI | GCGC | 5 cut(s) | 84, 315, 634, 858, 1021 |
| KasI | GGCGCC | 2 cut(s) | 83, 1020 |
| KroI | GCCGGC | 2 cut(s) | 702, 890 |
| KroNI | GCCGGC | 2 cut(s) | 704, 892 |
| Kzo9I | GATC | 4 cut(s) | 28, 172, 356, 772 |
| LguI | GCTCTTC | 1 cut(s) | 514 |
| LmnI | GCTCC | 4 cut(s) | 10, 322, 344, 488 |
| Lsp1109I | GCAGC | 3 cut(s) | 43, 387, 390 |
| LweI | GCATC | 5 cut(s) | 415, 527, 578, 699, 1032 |
| MaeI | CTAG | 3 cut(s) | 360, 827, 900 |
| MaeII | ACGT | 2 cut(s) | 549, 782 |
| MaeIII | GTNAC | 1 cut(s) | 730 |
| MalI | GATC | 4 cut(s) | 30, 174, 358, 774 |
| MbiI | CCGCTC | 1 cut(s) | 63 |
| MboI | GATC | 4 cut(s) | 28, 172, 356, 772 |
| MboII | GAAGA | 9 cut(s) | 47, 50, 455, 458, 501, 597, 750, 761, 965 |
| MflI | RGATCY | 2 cut(s) | 172, 356 |
| MhlI | GDGCHC | 7 cut(s) | 161, 271, 327, 509, 642, 679, 741 |
| MlsI | TGGCCA | 1 cut(s) | 301 |
| MluCI | AATT | 2 cut(s) | 131, 667 |
| MluNI | TGGCCA | 1 cut(s) | 301 |
| Mly113I | GGCGCC | 2 cut(s) | 84, 1021 |
| MlyI | GAGTC | 2 cut(s) | 235, 746 |
| Mox20I | TGGCCA | 1 cut(s) | 301 |
| MroNI | GCCGGC | 2 cut(s) | 702, 890 |
| MscI | TGGCCA | 1 cut(s) | 301 |
| Msp20I | TGGCCA | 1 cut(s) | 301 |
| MspR9I | CCNGG | 8 cut(s) | 156, 246, 247, 332, 653, 658, 810, 1037 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 377 |
| MvnI | CGCG | 6 cut(s) | 169, 317, 340, 636, 645, 673 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 227, 642, 823, 849, 896, 905 |
| NaeI | GCCGGC | 2 cut(s) | 704, 892 |
| NarI | GGCGCC | 2 cut(s) | 84, 1021 |
| NciI | CCSGG | 8 cut(s) | 156, 246, 247, 332, 653, 658, 810, 1037 |
| NdeII | GATC | 4 cut(s) | 28, 172, 356, 772 |
| NgoMIV | GCCGGC | 2 cut(s) | 702, 890 |
| NlaIII | CATG | 3 cut(s) | 149, 306, 385 |
| NlaIV | GGNNCC | 8 cut(s) | 6, 73, 85, 159, 268, 439, 529, 1022 |
| NruI | TCGCGA | 2 cut(s) | 340, 673 |
| NspI | RCATGY | 1 cut(s) | 385 |
| PaeI | GCATGC | 1 cut(s) | 385 |
| PaeR7I | CTCGAG | 2 cut(s) | 681, 798 |
| PciSI | GCTCTTC | 1 cut(s) | 514 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 344 |
| PctI | GAATGC | 2 cut(s) | 90, 377 |
| PdiI | GCCGGC | 2 cut(s) | 704, 892 |
| PfeI | GAWTC | 1 cut(s) | 913 |
| PkrI | GCNGC | 8 cut(s) | 58, 168, 319, 377, 380, 593, 1020, 1047 |
| PleI | GAGTC | 2 cut(s) | 235, 746 |
| PluTI | GGCGCC | 2 cut(s) | 87, 1024 |
| PpsI | GAGTC | 2 cut(s) | 235, 746 |
| PpuMI | RGGWCCY | 1 cut(s) | 794 |
| Psp124BI | GAGCTC | 3 cut(s) | 327, 509, 741 |
| Psp1406I | AACGTT | 1 cut(s) | 782 |
| Psp5II | RGGWCCY | 1 cut(s) | 794 |
| PspEI | GGTNACC | 1 cut(s) | 730 |
| PspN4I | GGNNCC | 8 cut(s) | 6, 73, 85, 159, 268, 439, 529, 1022 |
| PspOMI | GGGCCC | 1 cut(s) | 157 |
| PspPI | GGNCC | 7 cut(s) | 152, 157, 158, 220, 438, 794, 816 |
| PspPPI | RGGWCCY | 1 cut(s) | 794 |
| PsuI | RGATCY | 2 cut(s) | 172, 356 |
| RruI | TCGCGA | 2 cut(s) | 340, 673 |
| Rsr2I | CGGWCCG | 1 cut(s) | 152 |
| RsrII | CGGWCCG | 1 cut(s) | 152 |
| SacI | GAGCTC | 3 cut(s) | 327, 509, 741 |
| SapI | GCTCTTC | 1 cut(s) | 514 |
| SatI | GCNGC | 8 cut(s) | 57, 167, 318, 376, 379, 592, 1019, 1046 |
| Sau3AI | GATC | 4 cut(s) | 28, 172, 356, 772 |
| Sau96I | GGNCC | 7 cut(s) | 152, 157, 158, 220, 438, 794, 816 |
| SchI | GAGTC | 2 cut(s) | 235, 746 |
| ScrFI | CCNGG | 8 cut(s) | 156, 246, 247, 332, 653, 658, 810, 1037 |
| SduI | GDGCHC | 7 cut(s) | 161, 271, 327, 509, 642, 679, 741 |
| SfaNI | GCATC | 5 cut(s) | 415, 527, 578, 699, 1032 |
| SfoI | GGCGCC | 2 cut(s) | 85, 1022 |
| Sfr274I | CTCGAG | 2 cut(s) | 681, 798 |
| SinI | GGWCC | 3 cut(s) | 152, 438, 794 |
| SlaI | CTCGAG | 2 cut(s) | 681, 798 |
| SmaI | CCCGGG | 1 cut(s) | 247 |
| SmlI | CTYRAG | 3 cut(s) | 681, 798, 1049 |
| SmoI | CTYRAG | 3 cut(s) | 681, 798, 1049 |
| SphI | GCATGC | 1 cut(s) | 385 |
| Sse9I | AATT | 2 cut(s) | 131, 667 |
| SspDI | GGCGCC | 2 cut(s) | 83, 1020 |
| SspMI | CTAG | 3 cut(s) | 360, 827, 900 |
| SstI | GAGCTC | 3 cut(s) | 327, 509, 741 |
| StyD4I | CCNGG | 8 cut(s) | 154, 244, 245, 330, 651, 656, 808, 1035 |
| TaaI | ACNGT | 4 cut(s) | 497, 866, 1005, 1068 |
| TaiI | ACGT | 2 cut(s) | 552, 785 |
| TaqI | TCGA | 9 cut(s) | 27, 280, 423, 562, 682, 741, 747, 799, 971 |
| TaqII | GACCGA | 1 cut(s) | 455 |
| TasI | AATT | 2 cut(s) | 131, 667 |
| TauI | GCSGC | 5 cut(s) | 169, 320, 594, 1021, 1048 |
| TfiI | GAWTC | 1 cut(s) | 913 |
| TscAI | CASTG | 1 cut(s) | 1008 |
| TseI | GCWGC | 3 cut(s) | 56, 375, 378 |
| TspDTI | ATGAA | 1 cut(s) | 204 |
| TspMI | CCCGGG | 1 cut(s) | 245 |
| TspRI | CASTG | 1 cut(s) | 1008 |
| VpaK11BI | GGWCC | 3 cut(s) | 152, 438, 794 |
| XceI | RCATGY | 1 cut(s) | 385 |
| XhoI | CTCGAG | 2 cut(s) | 681, 798 |
| XmaI | CCCGGG | 1 cut(s) | 245 |
| XmiI | GTMKAC | 2 cut(s) | 97, 552 |
| XspI | CTAG | 3 cut(s) | 360, 827, 900 |