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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 83, 425 |
| AccII | CGCG | 8 cut(s) | 191, 280, 750, 752, 754, 771, 773, 830 |
| AciI | CCGC | 4 cut(s) | 338, 551, 554, 698 |
| AclWI | GGATC | 4 cut(s) | 490, 503, 725, 738 |
| AcoI | YGGCCR | 1 cut(s) | 580 |
| AcsI | RAATTY | 2 cut(s) | 254, 516 |
| AcyI | GRCGYC | 2 cut(s) | 426, 891 |
| AfaI | GTAC | 4 cut(s) | 307, 333, 608, 647 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 422, 727 |
| AgeI | ACCGGT | 1 cut(s) | 415 |
| AgsI | TTSAA | 2 cut(s) | 515, 710 |
| AhlI | ACTAGT | 2 cut(s) | 260, 352 |
| AjnI | CCWGG | 4 cut(s) | 247, 299, 447, 893 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 702, 734 |
| AluBI | AGCT | 3 cut(s) | 566, 816, 823 |
| AluI | AGCT | 3 cut(s) | 566, 816, 823 |
| Alw26I | GTCTC | 1 cut(s) | 165 |
| AlwI | GGATC | 4 cut(s) | 490, 503, 725, 738 |
| Ama87I | CYCGRG | 1 cut(s) | 854 |
| AoxI | GGCC | 6 cut(s) | 205, 377, 391, 450, 484, 580 |
| ApeKI | GCWGC | 1 cut(s) | 594 |
| ApoI | RAATTY | 2 cut(s) | 254, 516 |
| AsiGI | ACCGGT | 1 cut(s) | 415 |
| AspLEI | GCGC | 7 cut(s) | 193, 428, 752, 754, 756, 773, 832 |
| AspS9I | GGNCC | 4 cut(s) | 158, 232, 378, 485 |
| AsuHPI | GGTGA | 1 cut(s) | 363 |
| AsuII | TTCGAA | 1 cut(s) | 468 |
| AsuNHI | GCTAGC | 1 cut(s) | 845 |
| AvaI | CYCGRG | 1 cut(s) | 854 |
| AvaII | GGWCC | 2 cut(s) | 158, 232 |
| BaeGI | GKGCMC | 1 cut(s) | 88 |
| BamHI | GGATCC | 2 cut(s) | 495, 730 |
| BanI | GGYRCC | 2 cut(s) | 83, 425 |
| BanII | GRGCYC | 1 cut(s) | 408 |
| BbvI | GCAGC | 1 cut(s) | 581 |
| BccI | CCATC | 3 cut(s) | 185, 221, 579 |
| BceAI | ACGGC | 1 cut(s) | 392 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 573, 607 |
| BciT130I | CCWGG | 4 cut(s) | 249, 301, 449, 895 |
| BclI | TGATCA | 2 cut(s) | 21, 681 |
| BcoDI | GTCTC | 1 cut(s) | 165 |
| BcuI | ACTAGT | 2 cut(s) | 260, 352 |
| BfaI | CTAG | 5 cut(s) | 261, 353, 474, 846, 913 |
| BfmI | CTRYAG | 1 cut(s) | 739 |
| BfoI | RGCGCY | 1 cut(s) | 429 |
| BisI | GCNGC | 2 cut(s) | 554, 595 |
| BlsI | GCNGC | 2 cut(s) | 555, 596 |
| BmcAI | AGTACT | 1 cut(s) | 307 |
| Bme1390I | CCNGG | 4 cut(s) | 249, 301, 449, 895 |
| Bme18I | GGWCC | 2 cut(s) | 158, 232 |
| BmeT110I | CYCGRG | 1 cut(s) | 854 |
| BmgT120I | GGNCC | 4 cut(s) | 158, 232, 378, 485 |
| BmiI | GGNNCC | 9 cut(s) | 6, 73, 85, 159, 427, 487, 497, 719, 732 |
| BmrFI | CCNGG | 4 cut(s) | 249, 301, 449, 895 |
| BmsI | GCATC | 2 cut(s) | 469, 486 |
| BmtI | GCTAGC | 1 cut(s) | 849 |
| BpmI | CTGGAG | 2 cut(s) | 270, 322 |
| Bpu14I | TTCGAA | 1 cut(s) | 468 |
| BsaAI | YACGTR | 1 cut(s) | 400 |
| BsaBI | GATNNNNATC | 1 cut(s) | 23 |
| BsaHI | GRCGYC | 2 cut(s) | 426, 891 |
| BsaJI | CCNNGG | 2 cut(s) | 358, 374 |
| BsaWI | WCCGGW | 2 cut(s) | 283, 415 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 893 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 66, 67, 422, 727 |
| Bse118I | RCCGGY | 1 cut(s) | 415 |
| Bse1I | ACTGG | 1 cut(s) | 313 |
| Bse8I | GATNNNNATC | 1 cut(s) | 23 |
| BseBI | CCWGG | 4 cut(s) | 249, 301, 449, 895 |
| BseDI | CCNNGG | 2 cut(s) | 358, 374 |
| BseGI | GGATG | 4 cut(s) | 96, 177, 460, 611 |
| BseJI | GATNNNNATC | 1 cut(s) | 23 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 422, 727 |
| BseMII | CTCAG | 3 cut(s) | 142, 250, 495 |
| BseNI | ACTGG | 1 cut(s) | 313 |
| BsePI | GCGCGC | 2 cut(s) | 750, 752 |
| BseSI | GKGCMC | 1 cut(s) | 88 |
| BseXI | GCAGC | 1 cut(s) | 581 |
| BseYI | CCCAGC | 1 cut(s) | 421 |
| BsgI | GTGCAG | 1 cut(s) | 421 |
| Bsh1236I | CGCG | 8 cut(s) | 191, 280, 750, 752, 754, 771, 773, 830 |
| Bsh1285I | CGRYCG | 1 cut(s) | 284 |
| BshFI | GGCC | 6 cut(s) | 207, 379, 393, 452, 486, 582 |
| BshNI | GGYRCC | 2 cut(s) | 83, 425 |
| BshTI | ACCGGT | 1 cut(s) | 415 |
| BsiEI | CGRYCG | 1 cut(s) | 284 |
| BsiHKCI | CYCGRG | 1 cut(s) | 854 |
| BsiSI | CCGG | 2 cut(s) | 284, 416 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 422, 727 |
| BsmAI | GTCTC | 1 cut(s) | 165 |
| BsnI | GGCC | 6 cut(s) | 207, 379, 393, 452, 486, 582 |
| BsoBI | CYCGRG | 1 cut(s) | 854 |
| Bsp119I | TTCGAA | 1 cut(s) | 468 |
| Bsp1286I | GDGCHC | 2 cut(s) | 88, 408 |
| Bsp143I | GATC | 6 cut(s) | 21, 495, 681, 730, 745, 774 |
| BspACI | CCGC | 4 cut(s) | 338, 551, 554, 698 |
| BspANI | GGCC | 6 cut(s) | 207, 379, 393, 452, 486, 582 |
| BspCNI | CTCAG | 3 cut(s) | 141, 249, 494 |
| BspFNI | CGCG | 8 cut(s) | 191, 280, 750, 752, 754, 771, 773, 830 |
| BspLI | GGNNCC | 9 cut(s) | 6, 73, 85, 159, 427, 487, 497, 719, 732 |
| BspOI | GCTAGC | 1 cut(s) | 849 |
| BspPI | GGATC | 4 cut(s) | 490, 503, 725, 738 |
| BspT104I | TTCGAA | 1 cut(s) | 468 |
| BspT107I | GGYRCC | 2 cut(s) | 83, 425 |
| BsrFI | RCCGGY | 1 cut(s) | 415 |
| BsrI | ACTGG | 1 cut(s) | 313 |
| BssAI | RCCGGY | 1 cut(s) | 415 |
| BssECI | CCNNGG | 2 cut(s) | 358, 374 |
| BssHII | GCGCGC | 2 cut(s) | 750, 752 |
| BssMI | GATC | 6 cut(s) | 21, 495, 681, 730, 745, 774 |
| BssNI | GRCGYC | 2 cut(s) | 426, 891 |
| BssT1I | CCWWGG | 1 cut(s) | 358 |
| Bst2UI | CCWGG | 4 cut(s) | 249, 301, 449, 895 |
| Bst4CI | ACNGT | 1 cut(s) | 109 |
| Bst6I | CTCTTC | 2 cut(s) | 30, 579 |
| BstACI | GRCGYC | 2 cut(s) | 426, 891 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 661 |
| BstBAI | YACGTR | 1 cut(s) | 400 |
| BstBI | TTCGAA | 1 cut(s) | 468 |
| BstC8I | GCNNGC | 5 cut(s) | 195, 209, 752, 754, 847 |
| BstDEI | CTNAG | 5 cut(s) | 128, 236, 481, 676, 812 |
| BstDSI | CCRYGG | 1 cut(s) | 374 |
| BstF5I | GGATG | 4 cut(s) | 96, 177, 460, 611 |
| BstFNI | CGCG | 8 cut(s) | 191, 280, 750, 752, 754, 771, 773, 830 |
| BstH2I | RGCGCY | 1 cut(s) | 429 |
| BstHHI | GCGC | 7 cut(s) | 193, 428, 752, 754, 756, 773, 832 |
| BstKTI | GATC | 6 cut(s) | 24, 498, 684, 733, 748, 777 |
| BstMAI | GTCTC | 1 cut(s) | 165 |
| BstMBI | GATC | 6 cut(s) | 21, 495, 681, 730, 745, 774 |
| BstMCI | CGRYCG | 1 cut(s) | 284 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 483, 661, 829 |
| BstNI | CCWGG | 4 cut(s) | 249, 301, 449, 895 |
| BstNSI | RCATGY | 1 cut(s) | 149 |
| BstSCI | CCNGG | 4 cut(s) | 247, 299, 447, 893 |
| BstSFI | CTRYAG | 1 cut(s) | 739 |
| BstSLI | GKGCMC | 1 cut(s) | 88 |
| BstUI | CGCG | 8 cut(s) | 191, 280, 750, 752, 754, 771, 773, 830 |
| BstV1I | GCAGC | 1 cut(s) | 581 |
| BstX2I | RGATCY | 2 cut(s) | 495, 730 |
| BstYI | RGATCY | 2 cut(s) | 495, 730 |
| BsuRI | GGCC | 6 cut(s) | 207, 379, 393, 452, 486, 582 |
| BtgI | CCRYGG | 1 cut(s) | 374 |
| BtgZI | GCGATG | 1 cut(s) | 555 |
| BtsCI | GGATG | 4 cut(s) | 96, 177, 460, 611 |
| BtsI | GCAGTG | 1 cut(s) | 164 |
| BtsIMutI | CAGTG | 1 cut(s) | 164 |
| Cac8I | GCNNGC | 5 cut(s) | 195, 209, 752, 754, 847 |
| CfoI | GCGC | 7 cut(s) | 193, 428, 752, 754, 756, 773, 832 |
| Cfr10I | RCCGGY | 1 cut(s) | 415 |
| Cfr13I | GGNCC | 4 cut(s) | 158, 232, 378, 485 |
| CseI | GACGC | 1 cut(s) | 899 |
| Csp6I | GTAC | 4 cut(s) | 306, 332, 607, 646 |
| CspAI | ACCGGT | 1 cut(s) | 415 |
| CviAII | CATG | 5 cut(s) | 146, 457, 656, 713, 725 |
| CviQI | GTAC | 4 cut(s) | 306, 332, 607, 646 |
| DdeI | CTNAG | 5 cut(s) | 128, 236, 481, 676, 812 |
| DinI | GGCGCC | 1 cut(s) | 427 |
| DpnI | GATC | 6 cut(s) | 23, 497, 683, 732, 747, 776 |
| DpnII | GATC | 6 cut(s) | 21, 495, 681, 730, 745, 774 |
| EaeI | YGGCCR | 1 cut(s) | 580 |
| Eam1104I | CTCTTC | 2 cut(s) | 30, 579 |
| EarI | CTCTTC | 2 cut(s) | 30, 579 |
| EciI | GGCGGA | 2 cut(s) | 327, 540 |
| Eco130I | CCWWGG | 1 cut(s) | 358 |
| Eco24I | GRGCYC | 1 cut(s) | 408 |
| Eco47I | GGWCC | 2 cut(s) | 158, 232 |
| Eco88I | CYCGRG | 1 cut(s) | 854 |
| EcoO109I | RGGNCCY | 2 cut(s) | 158, 485 |
| EcoRI | GAATTC | 1 cut(s) | 254 |
| EcoRII | CCWGG | 4 cut(s) | 247, 299, 447, 893 |
| EcoT14I | CCWWGG | 1 cut(s) | 358 |
| EcoT22I | ATGCAT | 1 cut(s) | 462 |
| EcoT38I | GRGCYC | 1 cut(s) | 408 |
| EgeI | GGCGCC | 1 cut(s) | 427 |
| EheI | GGCGCC | 1 cut(s) | 427 |
| ErhI | CCWWGG | 1 cut(s) | 358 |
| FaeI | CATG | 5 cut(s) | 149, 460, 659, 716, 728 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 27, 59, 310, 342 |
| FatI | CATG | 5 cut(s) | 145, 456, 655, 712, 724 |
| FauI | CCCGC | 1 cut(s) | 705 |
| FbaI | TGATCA | 2 cut(s) | 21, 681 |
| Fnu4HI | GCNGC | 2 cut(s) | 554, 595 |
| FokI | GGATG | 4 cut(s) | 83, 164, 447, 598 |
| FriOI | GRGCYC | 1 cut(s) | 408 |
| Fsp4HI | GCNGC | 2 cut(s) | 554, 595 |
| FspBI | CTAG | 5 cut(s) | 261, 353, 474, 846, 913 |
| GlaI | GCGC | 7 cut(s) | 192, 427, 751, 753, 755, 772, 831 |
| GluI | GCNGC | 2 cut(s) | 554, 595 |
| GsaI | CCCAGC | 1 cut(s) | 425 |
| GsuI | CTGGAG | 2 cut(s) | 270, 322 |
| HaeII | RGCGCY | 1 cut(s) | 429 |
| HaeIII | GGCC | 6 cut(s) | 207, 379, 393, 452, 486, 582 |
| HapII | CCGG | 2 cut(s) | 284, 416 |
| HgaI | GACGC | 1 cut(s) | 899 |
| HhaI | GCGC | 7 cut(s) | 193, 428, 752, 754, 756, 773, 832 |
| Hin1I | GRCGYC | 2 cut(s) | 426, 891 |
| Hin1II | CATG | 5 cut(s) | 149, 460, 659, 716, 728 |
| Hin6I | GCGC | 7 cut(s) | 191, 426, 750, 752, 754, 771, 830 |
| HinP1I | GCGC | 7 cut(s) | 191, 426, 750, 752, 754, 771, 830 |
| HinfI | GANTC | 5 cut(s) | 132, 173, 511, 693, 795 |
| HpaII | CCGG | 2 cut(s) | 284, 416 |
| HphI | GGTGA | 1 cut(s) | 363 |
| Hpy166II | GTNNAC | 1 cut(s) | 609 |
| Hpy188I | TCNGA | 6 cut(s) | 131, 218, 239, 628, 690, 794 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 508, 671 |
| Hpy8I | GTNNAC | 1 cut(s) | 609 |
| HpyAV | CCTTC | 2 cut(s) | 171, 731 |
| HpyCH4III | ACNGT | 1 cut(s) | 109 |
| HpyCH4IV | ACGT | 1 cut(s) | 399 |
| HpyCH4V | TGCA | 4 cut(s) | 149, 438, 460, 655 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 483, 661, 829 |
| HpyF3I | CTNAG | 5 cut(s) | 128, 236, 481, 676, 812 |
| HpySE526I | ACGT | 1 cut(s) | 399 |
| Hsp92I | GRCGYC | 2 cut(s) | 426, 891 |
| Hsp92II | CATG | 5 cut(s) | 149, 460, 659, 716, 728 |
| HspAI | GCGC | 7 cut(s) | 191, 426, 750, 752, 754, 771, 830 |
| KasI | GGCGCC | 1 cut(s) | 425 |
| Ksp22I | TGATCA | 2 cut(s) | 21, 681 |
| Kzo9I | GATC | 6 cut(s) | 21, 495, 681, 730, 745, 774 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| Lsp1109I | GCAGC | 1 cut(s) | 581 |
| LweI | GCATC | 2 cut(s) | 469, 486 |
| MaeI | CTAG | 5 cut(s) | 261, 353, 474, 846, 913 |
| MaeII | ACGT | 1 cut(s) | 399 |
| MalI | GATC | 6 cut(s) | 23, 497, 683, 732, 747, 776 |
| MauBI | CGCGCGCG | 1 cut(s) | 750 |
| MboI | GATC | 6 cut(s) | 21, 495, 681, 730, 745, 774 |
| MboII | GAAGA | 4 cut(s) | 28, 47, 252, 566 |
| MflI | RGATCY | 2 cut(s) | 495, 730 |
| MhlI | GDGCHC | 2 cut(s) | 88, 408 |
| MluCI | AATT | 3 cut(s) | 254, 290, 516 |
| Mly113I | GGCGCC | 1 cut(s) | 426 |
| MlyI | GAGTC | 3 cut(s) | 126, 167, 789 |
| Mph1103I | ATGCAT | 1 cut(s) | 462 |
| MseI | TTAA | 1 cut(s) | 45 |
| MspI | CCGG | 2 cut(s) | 284, 416 |
| MspR9I | CCNGG | 4 cut(s) | 249, 301, 449, 895 |
| MvaI | CCWGG | 4 cut(s) | 249, 301, 449, 895 |
| MvnI | CGCG | 8 cut(s) | 191, 280, 750, 752, 754, 771, 773, 830 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 483, 661, 829 |
| NarI | GGCGCC | 1 cut(s) | 426 |
| NdeII | GATC | 6 cut(s) | 21, 495, 681, 730, 745, 774 |
| NheI | GCTAGC | 1 cut(s) | 845 |
| NlaIII | CATG | 5 cut(s) | 149, 460, 659, 716, 728 |
| NlaIV | GGNNCC | 9 cut(s) | 6, 73, 85, 159, 427, 487, 497, 719, 732 |
| NsiI | ATGCAT | 1 cut(s) | 462 |
| NspI | RCATGY | 1 cut(s) | 149 |
| NspV | TTCGAA | 1 cut(s) | 468 |
| PauI | GCGCGC | 2 cut(s) | 750, 752 |
| PfeI | GAWTC | 2 cut(s) | 511, 693 |
| PfoI | TCCNGGA | 1 cut(s) | 299 |
| PinAI | ACCGGT | 1 cut(s) | 415 |
| PkrI | GCNGC | 2 cut(s) | 555, 596 |
| PleI | GAGTC | 3 cut(s) | 126, 167, 789 |
| PluTI | GGCGCC | 1 cut(s) | 429 |
| PpsI | GAGTC | 3 cut(s) | 126, 167, 789 |
| Ppu21I | YACGTR | 1 cut(s) | 400 |
| PpuMI | RGGWCCY | 1 cut(s) | 158 |
| Psp5II | RGGWCCY | 1 cut(s) | 158 |
| Psp6I | CCWGG | 4 cut(s) | 247, 299, 447, 893 |
| PspFI | CCCAGC | 1 cut(s) | 421 |
| PspGI | CCWGG | 4 cut(s) | 247, 299, 447, 893 |
| PspN4I | GGNNCC | 9 cut(s) | 6, 73, 85, 159, 427, 487, 497, 719, 732 |
| PspPI | GGNCC | 4 cut(s) | 158, 232, 378, 485 |
| PspPPI | RGGWCCY | 1 cut(s) | 158 |
| PsuI | RGATCY | 2 cut(s) | 495, 730 |
| PteI | GCGCGC | 2 cut(s) | 750, 752 |
| RsaI | GTAC | 4 cut(s) | 307, 333, 608, 647 |
| RsaNI | GTAC | 4 cut(s) | 306, 332, 607, 646 |
| SaqAI | TTAA | 1 cut(s) | 45 |
| SatI | GCNGC | 2 cut(s) | 554, 595 |
| Sau3AI | GATC | 6 cut(s) | 21, 495, 681, 730, 745, 774 |
| Sau96I | GGNCC | 4 cut(s) | 158, 232, 378, 485 |
| ScaI | AGTACT | 1 cut(s) | 307 |
| SchI | GAGTC | 3 cut(s) | 126, 167, 789 |
| ScrFI | CCNGG | 4 cut(s) | 249, 301, 449, 895 |
| SduI | GDGCHC | 2 cut(s) | 88, 408 |
| SfaNI | GCATC | 2 cut(s) | 469, 486 |
| SfcI | CTRYAG | 1 cut(s) | 739 |
| SfoI | GGCGCC | 1 cut(s) | 427 |
| SfuI | TTCGAA | 1 cut(s) | 468 |
| SinI | GGWCC | 2 cut(s) | 158, 232 |
| SpeI | ACTAGT | 2 cut(s) | 260, 352 |
| Sse9I | AATT | 3 cut(s) | 254, 290, 516 |
| SsiI | CCGC | 4 cut(s) | 338, 551, 554, 698 |
| SspDI | GGCGCC | 1 cut(s) | 425 |
| SspMI | CTAG | 5 cut(s) | 261, 353, 474, 846, 913 |
| StyD4I | CCNGG | 4 cut(s) | 247, 299, 447, 893 |
| StyI | CCWWGG | 1 cut(s) | 358 |
| TaaI | ACNGT | 1 cut(s) | 109 |
| TaiI | ACGT | 1 cut(s) | 402 |
| TaqI | TCGA | 3 cut(s) | 468, 501, 672 |
| TaqII | GACCGA | 1 cut(s) | 220 |
| TasI | AATT | 3 cut(s) | 254, 290, 516 |
| TatI | WGTACW | 1 cut(s) | 305 |
| TauI | GCSGC | 1 cut(s) | 556 |
| TfiI | GAWTC | 2 cut(s) | 511, 693 |
| Tru1I | TTAA | 1 cut(s) | 45 |
| Tru9I | TTAA | 1 cut(s) | 45 |
| TscAI | CASTG | 1 cut(s) | 171 |
| TseI | GCWGC | 1 cut(s) | 594 |
| TspDTI | ATGAA | 4 cut(s) | 85, 312, 672, 713 |
| TspRI | CASTG | 1 cut(s) | 171 |
| VpaK11BI | GGWCC | 2 cut(s) | 158, 232 |
| XapI | RAATTY | 2 cut(s) | 254, 516 |
| XceI | RCATGY | 1 cut(s) | 149 |
| XspI | CTAG | 5 cut(s) | 261, 353, 474, 846, 913 |
| ZrmI | AGTACT | 1 cut(s) | 307 |
| Zsp2I | ATGCAT | 1 cut(s) | 462 |