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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 106 |
| AccII | CGCG | 2 cut(s) | 69, 302 |
| AciI | CCGC | 2 cut(s) | 233, 410 |
| AclWI | GGATC | 2 cut(s) | 19, 32 |
| AcsI | RAATTY | 1 cut(s) | 189 |
| AcvI | CACGTG | 1 cut(s) | 280 |
| AfaI | GTAC | 3 cut(s) | 137, 176, 210 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 106, 465 |
| AgsI | TTSAA | 1 cut(s) | 44 |
| AjnI | CCWGG | 2 cut(s) | 253, 422 |
| AluBI | AGCT | 2 cut(s) | 230, 352 |
| AluI | AGCT | 2 cut(s) | 230, 352 |
| AlwI | GGATC | 2 cut(s) | 19, 32 |
| AoxI | GGCC | 4 cut(s) | 13, 385, 455, 467 |
| ApaI | GGGCCC | 1 cut(s) | 459 |
| ApeKI | GCWGC | 2 cut(s) | 297, 329 |
| ApoI | RAATTY | 1 cut(s) | 189 |
| AspLEI | GCGC | 3 cut(s) | 260, 285, 302 |
| AspS9I | GGNCC | 3 cut(s) | 14, 455, 456 |
| BaeGI | GKGCMC | 1 cut(s) | 459 |
| BamHI | GGATCC | 1 cut(s) | 24 |
| BanII | GRGCYC | 1 cut(s) | 459 |
| BbrPI | CACGTG | 1 cut(s) | 280 |
| BbvI | GCAGC | 2 cut(s) | 309, 316 |
| BceAI | ACGGC | 1 cut(s) | 108 |
| BciT130I | CCWGG | 2 cut(s) | 255, 424 |
| BfaI | CTAG | 3 cut(s) | 3, 236, 465 |
| BfmI | CTRYAG | 1 cut(s) | 268 |
| BfoI | RGCGCY | 1 cut(s) | 261 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 384 |
| BisI | GCNGC | 2 cut(s) | 298, 330 |
| BlsI | GCNGC | 2 cut(s) | 299, 331 |
| BmcAI | AGTACT | 2 cut(s) | 137, 210 |
| Bme1390I | CCNGG | 2 cut(s) | 255, 424 |
| BmgT120I | GGNCC | 3 cut(s) | 14, 455, 456 |
| BmiI | GGNNCC | 3 cut(s) | 26, 457, 458 |
| BmrFI | CCNGG | 2 cut(s) | 255, 424 |
| BmrI | ACTGGG | 1 cut(s) | 221 |
| BmsI | GCATC | 2 cut(s) | 15, 409 |
| BmuI | ACTGGG | 1 cut(s) | 221 |
| BsaAI | YACGTR | 1 cut(s) | 280 |
| BsaJI | CCNNGG | 1 cut(s) | 253 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 106, 465 |
| Bse118I | RCCGGY | 1 cut(s) | 91 |
| Bse1I | ACTGG | 1 cut(s) | 216 |
| BseBI | CCWGG | 2 cut(s) | 255, 424 |
| BseDI | CCNNGG | 1 cut(s) | 253 |
| BseGI | GGATG | 1 cut(s) | 75 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 106, 465 |
| BseNI | ACTGG | 1 cut(s) | 216 |
| BseRI | GAGGAG | 1 cut(s) | 135 |
| BseSI | GKGCMC | 1 cut(s) | 459 |
| BseXI | GCAGC | 2 cut(s) | 309, 316 |
| BseYI | CCCAGC | 1 cut(s) | 226 |
| Bsh1236I | CGCG | 2 cut(s) | 69, 302 |
| BshFI | GGCC | 4 cut(s) | 15, 387, 457, 469 |
| BsiSI | CCGG | 1 cut(s) | 92 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 106, 465 |
| BsnI | GGCC | 4 cut(s) | 15, 387, 457, 469 |
| Bsp120I | GGGCCC | 1 cut(s) | 455 |
| Bsp1286I | GDGCHC | 1 cut(s) | 459 |
| Bsp143I | GATC | 3 cut(s) | 24, 274, 303 |
| Bsp68I | TCGCGA | 1 cut(s) | 69 |
| BspACI | CCGC | 2 cut(s) | 233, 410 |
| BspANI | GGCC | 4 cut(s) | 15, 387, 457, 469 |
| BspFNI | CGCG | 2 cut(s) | 69, 302 |
| BspLI | GGNNCC | 3 cut(s) | 26, 457, 458 |
| BspPI | GGATC | 2 cut(s) | 19, 32 |
| BsrFI | RCCGGY | 1 cut(s) | 91 |
| BsrI | ACTGG | 1 cut(s) | 216 |
| BssAI | RCCGGY | 1 cut(s) | 91 |
| BssECI | CCNNGG | 1 cut(s) | 253 |
| BssMI | GATC | 3 cut(s) | 24, 274, 303 |
| Bst2UI | CCWGG | 2 cut(s) | 255, 424 |
| BstBAI | YACGTR | 1 cut(s) | 280 |
| BstC8I | GCNNGC | 1 cut(s) | 376 |
| BstDEI | CTNAG | 2 cut(s) | 205, 341 |
| BstF5I | GGATG | 1 cut(s) | 75 |
| BstFNI | CGCG | 2 cut(s) | 69, 302 |
| BstH2I | RGCGCY | 1 cut(s) | 261 |
| BstHHI | GCGC | 3 cut(s) | 260, 285, 302 |
| BstKTI | GATC | 3 cut(s) | 27, 277, 306 |
| BstMBI | GATC | 3 cut(s) | 24, 274, 303 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 12, 384, 409 |
| BstNI | CCWGG | 2 cut(s) | 255, 424 |
| BstSCI | CCNGG | 2 cut(s) | 253, 422 |
| BstSFI | CTRYAG | 1 cut(s) | 268 |
| BstSLI | GKGCMC | 1 cut(s) | 459 |
| BstUI | CGCG | 2 cut(s) | 69, 302 |
| BstV1I | GCAGC | 2 cut(s) | 309, 316 |
| BstX2I | RGATCY | 1 cut(s) | 24 |
| BstYI | RGATCY | 1 cut(s) | 24 |
| BsuRI | GGCC | 4 cut(s) | 15, 387, 457, 469 |
| BtgZI | GCGATG | 1 cut(s) | 84 |
| BtsCI | GGATG | 1 cut(s) | 75 |
| BtuMI | TCGCGA | 1 cut(s) | 69 |
| Cac8I | GCNNGC | 1 cut(s) | 376 |
| CfoI | GCGC | 3 cut(s) | 260, 285, 302 |
| Cfr10I | RCCGGY | 1 cut(s) | 91 |
| Cfr13I | GGNCC | 3 cut(s) | 14, 455, 456 |
| Csp6I | GTAC | 3 cut(s) | 136, 175, 209 |
| CviJI | RGCY | 9 cut(s) | 15, 95, 123, 230, 290, 352, 387, 457, 469 |
| CviKI_1 | RGCY | 9 cut(s) | 15, 95, 123, 230, 290, 352, 387, 457, 469 |
| CviQI | GTAC | 3 cut(s) | 136, 175, 209 |
| DdeI | CTNAG | 2 cut(s) | 205, 341 |
| DpnI | GATC | 3 cut(s) | 26, 276, 305 |
| DpnII | GATC | 3 cut(s) | 24, 274, 303 |
| Eco147I | AGGCCT | 1 cut(s) | 469 |
| Eco24I | GRGCYC | 1 cut(s) | 459 |
| Eco72I | CACGTG | 1 cut(s) | 280 |
| EcoO109I | RGGNCCY | 1 cut(s) | 456 |
| EcoRII | CCWGG | 2 cut(s) | 253, 422 |
| EcoT38I | GRGCYC | 1 cut(s) | 459 |
| FaiI | YATR | 6 cut(s) | 37, 58, 169, 348, 417, 481 |
| FauI | CCCGC | 1 cut(s) | 417 |
| Fnu4HI | GCNGC | 2 cut(s) | 298, 330 |
| FokI | GGATG | 1 cut(s) | 62 |
| FriOI | GRGCYC | 1 cut(s) | 459 |
| Fsp4HI | GCNGC | 2 cut(s) | 298, 330 |
| FspBI | CTAG | 3 cut(s) | 3, 236, 465 |
| GlaI | GCGC | 3 cut(s) | 259, 284, 301 |
| GluI | GCNGC | 2 cut(s) | 298, 330 |
| GsaI | CCCAGC | 1 cut(s) | 230 |
| HaeII | RGCGCY | 1 cut(s) | 261 |
| HaeIII | GGCC | 4 cut(s) | 15, 387, 457, 469 |
| HapII | CCGG | 1 cut(s) | 92 |
| HhaI | GCGC | 3 cut(s) | 260, 285, 302 |
| Hin6I | GCGC | 3 cut(s) | 258, 283, 300 |
| HinP1I | GCGC | 3 cut(s) | 258, 283, 300 |
| HinfI | GANTC | 3 cut(s) | 40, 222, 246 |
| HpaII | CCGG | 1 cut(s) | 92 |
| Hpy188I | TCNGA | 2 cut(s) | 157, 316 |
| Hpy188III | TCNNGA | 1 cut(s) | 68 |
| Hpy99I | CGWCG | 1 cut(s) | 69 |
| HpyAV | CCTTC | 2 cut(s) | 188, 471 |
| HpyCH4IV | ACGT | 1 cut(s) | 279 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 12, 384, 409 |
| HpyF3I | CTNAG | 2 cut(s) | 205, 341 |
| HpySE526I | ACGT | 1 cut(s) | 279 |
| HspAI | GCGC | 3 cut(s) | 258, 283, 300 |
| Kzo9I | GATC | 3 cut(s) | 24, 274, 303 |
| LmnI | GCTCC | 3 cut(s) | 235, 265, 364 |
| LpnPI | CCDG | 9 cut(s) | 105, 197, 240, 240, 267, 322, 409, 436, 461 |
| Lsp1109I | GCAGC | 2 cut(s) | 309, 316 |
| LweI | GCATC | 2 cut(s) | 15, 409 |
| MaeI | CTAG | 3 cut(s) | 3, 236, 465 |
| MaeII | ACGT | 1 cut(s) | 279 |
| MalI | GATC | 3 cut(s) | 26, 276, 305 |
| MboI | GATC | 3 cut(s) | 24, 274, 303 |
| MboII | GAAGA | 2 cut(s) | 231, 347 |
| MflI | RGATCY | 1 cut(s) | 24 |
| MhlI | GDGCHC | 1 cut(s) | 459 |
| MluCI | AATT | 3 cut(s) | 189, 380, 395 |
| MnlI | CCTC | 5 cut(s) | 121, 156, 260, 398, 448 |
| MspA1I | CMGCKG | 1 cut(s) | 412 |
| MspI | CCGG | 1 cut(s) | 92 |
| MspR9I | CCNGG | 2 cut(s) | 255, 424 |
| MvaI | CCWGG | 2 cut(s) | 255, 424 |
| MvnI | CGCG | 2 cut(s) | 69, 302 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 12, 384, 409 |
| NdeII | GATC | 3 cut(s) | 24, 274, 303 |
| NlaIV | GGNNCC | 3 cut(s) | 26, 457, 458 |
| NruI | TCGCGA | 1 cut(s) | 69 |
| PceI | AGGCCT | 1 cut(s) | 469 |
| PfeI | GAWTC | 3 cut(s) | 40, 222, 246 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 106 |
| PkrI | GCNGC | 2 cut(s) | 299, 331 |
| PmaCI | CACGTG | 1 cut(s) | 280 |
| PmlI | CACGTG | 1 cut(s) | 280 |
| Ppu21I | YACGTR | 1 cut(s) | 280 |
| Psp6I | CCWGG | 2 cut(s) | 253, 422 |
| PspCI | CACGTG | 1 cut(s) | 280 |
| PspFI | CCCAGC | 1 cut(s) | 226 |
| PspGI | CCWGG | 2 cut(s) | 253, 422 |
| PspN4I | GGNNCC | 3 cut(s) | 26, 457, 458 |
| PspOMI | GGGCCC | 1 cut(s) | 455 |
| PspPI | GGNCC | 3 cut(s) | 14, 455, 456 |
| PsuI | RGATCY | 1 cut(s) | 24 |
| RruI | TCGCGA | 1 cut(s) | 69 |
| RsaI | GTAC | 3 cut(s) | 137, 176, 210 |
| RsaNI | GTAC | 3 cut(s) | 136, 175, 209 |
| SatI | GCNGC | 2 cut(s) | 298, 330 |
| Sau3AI | GATC | 3 cut(s) | 24, 274, 303 |
| Sau96I | GGNCC | 3 cut(s) | 14, 455, 456 |
| ScaI | AGTACT | 2 cut(s) | 137, 210 |
| ScrFI | CCNGG | 2 cut(s) | 255, 424 |
| SduI | GDGCHC | 1 cut(s) | 459 |
| SetI | ASST | 5 cut(s) | 180, 232, 282, 354, 440 |
| SfaNI | GCATC | 2 cut(s) | 15, 409 |
| SfcI | CTRYAG | 1 cut(s) | 268 |
| Sse9I | AATT | 3 cut(s) | 189, 380, 395 |
| SseBI | AGGCCT | 1 cut(s) | 469 |
| SsiI | CCGC | 2 cut(s) | 233, 410 |
| SspMI | CTAG | 3 cut(s) | 3, 236, 465 |
| StuI | AGGCCT | 1 cut(s) | 469 |
| StyD4I | CCNGG | 2 cut(s) | 253, 422 |
| TaiI | ACGT | 1 cut(s) | 282 |
| TasI | AATT | 3 cut(s) | 189, 380, 395 |
| TatI | WGTACW | 2 cut(s) | 135, 208 |
| TfiI | GAWTC | 3 cut(s) | 40, 222, 246 |
| TseI | GCWGC | 2 cut(s) | 297, 329 |
| TspGWI | ACGGA | 1 cut(s) | 258 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 106 |
| XapI | RAATTY | 1 cut(s) | 189 |
| XspI | CTAG | 3 cut(s) | 3, 236, 465 |
| ZrmI | AGTACT | 2 cut(s) | 137, 210 |