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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 9 cut(s) | 18, 43, 63, 193, 331, 387, 539, 541, 719 |
| AclWI | GGATC | 2 cut(s) | 282, 295 |
| AcoI | YGGCCR | 1 cut(s) | 185 |
| AfaI | GTAC | 1 cut(s) | 398 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 42, 155, 183, 517, 688, 764, 765 |
| AgeI | ACCGGT | 2 cut(s) | 148, 353 |
| AgsI | TTSAA | 1 cut(s) | 306 |
| AluBI | AGCT | 4 cut(s) | 200, 364, 584, 591 |
| AluI | AGCT | 4 cut(s) | 200, 364, 584, 591 |
| Alw21I | GWGCWC | 1 cut(s) | 202 |
| Alw26I | GTCTC | 1 cut(s) | 256 |
| AlwI | GGATC | 2 cut(s) | 282, 295 |
| Ama87I | CYCGRG | 1 cut(s) | 515 |
| AoxI | GGCC | 5 cut(s) | 3, 185, 276, 678, 741 |
| AsiGI | ACCGGT | 2 cut(s) | 148, 353 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 484 |
| AspLEI | GCGC | 4 cut(s) | 539, 541, 600, 721 |
| AspS9I | GGNCC | 6 cut(s) | 4, 151, 277, 520, 679, 741 |
| AsuC2I | CCSGG | 2 cut(s) | 167, 666 |
| AsuHPI | GGTGA | 2 cut(s) | 368, 399 |
| AvaI | CYCGRG | 1 cut(s) | 515 |
| AvaII | GGWCC | 2 cut(s) | 151, 520 |
| BamHI | GGATCC | 1 cut(s) | 287 |
| BanII | GRGCYC | 1 cut(s) | 202 |
| Bbv12I | GWGCWC | 1 cut(s) | 202 |
| BccI | CCATC | 2 cut(s) | 626, 758 |
| BceAI | ACGGC | 1 cut(s) | 200 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 192, 226 |
| BcnI | CCSGG | 2 cut(s) | 167, 666 |
| BcoDI | GTCTC | 1 cut(s) | 256 |
| BfaI | CTAG | 2 cut(s) | 266, 722 |
| BisI | GCNGC | 4 cut(s) | 188, 191, 329, 569 |
| BlsI | GCNGC | 4 cut(s) | 189, 192, 330, 570 |
| Bme1390I | CCNGG | 2 cut(s) | 167, 666 |
| Bme18I | GGWCC | 2 cut(s) | 151, 520 |
| BmeT110I | CYCGRG | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 6 cut(s) | 4, 151, 277, 520, 679, 741 |
| BmiI | GGNNCC | 3 cut(s) | 289, 509, 522 |
| BmrFI | CCNGG | 2 cut(s) | 167, 666 |
| BmsI | GCATC | 3 cut(s) | 261, 278, 633 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 206, 238 |
| BpuMI | CCSGG | 2 cut(s) | 167, 666 |
| BsaAI | YACGTR | 1 cut(s) | 236 |
| BsaBI | GATNNNNATC | 1 cut(s) | 36 |
| BsaJI | CCNNGG | 5 cut(s) | 41, 154, 165, 516, 572 |
| BsaWI | WCCGGW | 4 cut(s) | 79, 148, 353, 688 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 42, 155, 183, 517, 688, 764, 765 |
| Bse118I | RCCGGY | 2 cut(s) | 148, 353 |
| Bse3DI | GCAATG | 1 cut(s) | 794 |
| Bse8I | GATNNNNATC | 1 cut(s) | 36 |
| BseDI | CCNNGG | 5 cut(s) | 41, 154, 165, 516, 572 |
| BseGI | GGATG | 2 cut(s) | 252, 401 |
| BseJI | GATNNNNATC | 1 cut(s) | 36 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 42, 155, 183, 517, 688, 764, 765 |
| BseMI | GCAATG | 1 cut(s) | 794 |
| BsePI | GCGCGC | 1 cut(s) | 537 |
| BseX3I | CGGCCG | 1 cut(s) | 185 |
| BsgI | GTGCAG | 1 cut(s) | 111 |
| Bsh1236I | CGCG | 9 cut(s) | 18, 43, 63, 193, 331, 387, 539, 541, 719 |
| Bsh1285I | CGRYCG | 3 cut(s) | 80, 188, 385 |
| BshFI | GGCC | 5 cut(s) | 5, 187, 278, 680, 743 |
| BshTI | ACCGGT | 2 cut(s) | 148, 353 |
| BsiEI | CGRYCG | 3 cut(s) | 80, 188, 385 |
| BsiHKAI | GWGCWC | 1 cut(s) | 202 |
| BsiHKCI | CYCGRG | 1 cut(s) | 515 |
| BsiSI | CCGG | 6 cut(s) | 80, 149, 167, 354, 666, 689 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 42, 155, 183, 517, 688, 764, 765 |
| BsmAI | GTCTC | 1 cut(s) | 256 |
| BsnI | GGCC | 5 cut(s) | 5, 187, 278, 680, 743 |
| BsoBI | CYCGRG | 1 cut(s) | 515 |
| Bsp1286I | GDGCHC | 1 cut(s) | 202 |
| Bsp143I | GATC | 2 cut(s) | 287, 542 |
| Bsp68I | TCGCGA | 1 cut(s) | 387 |
| BspANI | GGCC | 5 cut(s) | 5, 187, 278, 680, 743 |
| BspFNI | CGCG | 9 cut(s) | 18, 43, 63, 193, 331, 387, 539, 541, 719 |
| BspLI | GGNNCC | 3 cut(s) | 289, 509, 522 |
| BspPI | GGATC | 2 cut(s) | 282, 295 |
| BsrDI | GCAATG | 1 cut(s) | 794 |
| BsrFI | RCCGGY | 2 cut(s) | 148, 353 |
| BssAI | RCCGGY | 2 cut(s) | 148, 353 |
| BssECI | CCNNGG | 5 cut(s) | 41, 154, 165, 516, 572 |
| BssHII | GCGCGC | 1 cut(s) | 537 |
| BssMI | GATC | 2 cut(s) | 287, 542 |
| BssT1I | CCWWGG | 1 cut(s) | 154 |
| Bst4CI | ACNGT | 1 cut(s) | 210 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 224 |
| BstBAI | YACGTR | 1 cut(s) | 236 |
| BstC8I | GCNNGC | 5 cut(s) | 539, 566, 615, 713, 717 |
| BstDEI | CTNAG | 2 cut(s) | 466, 580 |
| BstDSI | CCRYGG | 1 cut(s) | 41 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 515 |
| BstF5I | GGATG | 2 cut(s) | 252, 401 |
| BstFNI | CGCG | 9 cut(s) | 18, 43, 63, 193, 331, 387, 539, 541, 719 |
| BstHHI | GCGC | 4 cut(s) | 539, 541, 600, 721 |
| BstKTI | GATC | 2 cut(s) | 290, 545 |
| BstMAI | GTCTC | 1 cut(s) | 256 |
| BstMBI | GATC | 2 cut(s) | 287, 542 |
| BstMCI | CGRYCG | 3 cut(s) | 80, 188, 385 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 224, 275, 597 |
| BstNSI | RCATGY | 1 cut(s) | 715 |
| BstSCI | CCNGG | 2 cut(s) | 165, 664 |
| BstUI | CGCG | 9 cut(s) | 18, 43, 63, 193, 331, 387, 539, 541, 719 |
| BstX2I | RGATCY | 1 cut(s) | 287 |
| BstYI | RGATCY | 1 cut(s) | 287 |
| BstZI | CGGCCG | 1 cut(s) | 185 |
| BsuRI | GGCC | 5 cut(s) | 5, 187, 278, 680, 743 |
| BtgI | CCRYGG | 1 cut(s) | 41 |
| BtsCI | GGATG | 2 cut(s) | 252, 401 |
| BtuMI | TCGCGA | 1 cut(s) | 387 |
| Cac8I | GCNNGC | 5 cut(s) | 539, 566, 615, 713, 717 |
| CfoI | GCGC | 4 cut(s) | 539, 541, 600, 721 |
| Cfr10I | RCCGGY | 2 cut(s) | 148, 353 |
| Cfr13I | GGNCC | 6 cut(s) | 4, 151, 277, 520, 679, 741 |
| Cfr42I | CCGCGG | 1 cut(s) | 44 |
| CseI | GACGC | 1 cut(s) | 7 |
| Csp6I | GTAC | 1 cut(s) | 397 |
| CspAI | ACCGGT | 2 cut(s) | 148, 353 |
| CviAII | CATG | 3 cut(s) | 249, 446, 712 |
| CviQI | GTAC | 1 cut(s) | 397 |
| DdeI | CTNAG | 2 cut(s) | 466, 580 |
| DpnI | GATC | 2 cut(s) | 289, 544 |
| DpnII | GATC | 2 cut(s) | 287, 542 |
| EaeI | YGGCCR | 1 cut(s) | 185 |
| EagI | CGGCCG | 1 cut(s) | 185 |
| EciI | GGCGGA | 2 cut(s) | 123, 315 |
| Ecl136II | GAGCTC | 1 cut(s) | 200 |
| EclXI | CGGCCG | 1 cut(s) | 185 |
| Eco130I | CCWWGG | 1 cut(s) | 154 |
| Eco24I | GRGCYC | 1 cut(s) | 202 |
| Eco47I | GGWCC | 2 cut(s) | 151, 520 |
| Eco52I | CGGCCG | 1 cut(s) | 185 |
| Eco53kI | GAGCTC | 1 cut(s) | 200 |
| Eco88I | CYCGRG | 1 cut(s) | 515 |
| EcoICRI | GAGCTC | 1 cut(s) | 200 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 515 |
| EcoO109I | RGGNCCY | 1 cut(s) | 520 |
| EcoT14I | CCWWGG | 1 cut(s) | 154 |
| EcoT22I | ATGCAT | 1 cut(s) | 254 |
| EcoT38I | GRGCYC | 1 cut(s) | 202 |
| ErhI | CCWWGG | 1 cut(s) | 154 |
| FaeI | CATG | 3 cut(s) | 252, 449, 715 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 106, 138 |
| FatI | CATG | 3 cut(s) | 248, 445, 711 |
| FauI | CCCGC | 1 cut(s) | 4 |
| Fnu4HI | GCNGC | 4 cut(s) | 188, 191, 329, 569 |
| FokI | GGATG | 2 cut(s) | 239, 388 |
| FriOI | GRGCYC | 1 cut(s) | 202 |
| Fsp4HI | GCNGC | 4 cut(s) | 188, 191, 329, 569 |
| FspBI | CTAG | 2 cut(s) | 266, 722 |
| GlaI | GCGC | 4 cut(s) | 538, 540, 599, 720 |
| GluI | GCNGC | 4 cut(s) | 188, 191, 329, 569 |
| HaeIII | GGCC | 5 cut(s) | 5, 187, 278, 680, 743 |
| HapII | CCGG | 6 cut(s) | 80, 149, 167, 354, 666, 689 |
| HgaI | GACGC | 1 cut(s) | 7 |
| HhaI | GCGC | 4 cut(s) | 539, 541, 600, 721 |
| Hin1II | CATG | 3 cut(s) | 252, 449, 715 |
| Hin6I | GCGC | 4 cut(s) | 537, 539, 598, 719 |
| HinP1I | GCGC | 4 cut(s) | 537, 539, 598, 719 |
| HinfI | GANTC | 2 cut(s) | 32, 302 |
| HpaII | CCGG | 6 cut(s) | 80, 149, 167, 354, 666, 689 |
| HphI | GGTGA | 2 cut(s) | 368, 399 |
| Hpy166II | GTNNAC | 1 cut(s) | 399 |
| Hpy188I | TCNGA | 3 cut(s) | 301, 418, 555 |
| Hpy188III | TCNNGA | 2 cut(s) | 386, 515 |
| Hpy8I | GTNNAC | 1 cut(s) | 399 |
| Hpy99I | CGWCG | 4 cut(s) | 23, 336, 764, 776 |
| HpyAV | CCTTC | 2 cut(s) | 521, 639 |
| HpyCH4III | ACNGT | 1 cut(s) | 210 |
| HpyCH4IV | ACGT | 2 cut(s) | 235, 771 |
| HpyCH4V | TGCA | 3 cut(s) | 113, 128, 252 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 224, 275, 597 |
| HpyF3I | CTNAG | 2 cut(s) | 466, 580 |
| HpySE526I | ACGT | 2 cut(s) | 235, 771 |
| Hsp92II | CATG | 3 cut(s) | 252, 449, 715 |
| HspAI | GCGC | 4 cut(s) | 537, 539, 598, 719 |
| KspI | CCGCGG | 1 cut(s) | 44 |
| Kzo9I | GATC | 2 cut(s) | 287, 542 |
| LmnI | GCTCC | 1 cut(s) | 760 |
| LpnPI | CCDG | 7 cut(s) | 93, 162, 180, 260, 367, 679, 702 |
| LweI | GCATC | 3 cut(s) | 261, 278, 633 |
| MaeI | CTAG | 2 cut(s) | 266, 722 |
| MaeII | ACGT | 2 cut(s) | 235, 771 |
| MalI | GATC | 2 cut(s) | 289, 544 |
| MboI | GATC | 2 cut(s) | 287, 542 |
| MboII | GAAGA | 3 cut(s) | 114, 492, 722 |
| MflI | RGATCY | 1 cut(s) | 287 |
| MhlI | GDGCHC | 1 cut(s) | 202 |
| MluCI | AATT | 3 cut(s) | 86, 674, 750 |
| MmeI | TCCRAC | 1 cut(s) | 709 |
| Mph1103I | ATGCAT | 1 cut(s) | 254 |
| MroXI | GAANNNNTTC | 1 cut(s) | 484 |
| MseI | TTAA | 1 cut(s) | 808 |
| MspA1I | CMGCKG | 1 cut(s) | 43 |
| MspI | CCGG | 6 cut(s) | 80, 149, 167, 354, 666, 689 |
| MspR9I | CCNGG | 2 cut(s) | 167, 666 |
| MvnI | CGCG | 9 cut(s) | 18, 43, 63, 193, 331, 387, 539, 541, 719 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 224, 275, 597 |
| NciI | CCSGG | 2 cut(s) | 167, 666 |
| NdeII | GATC | 2 cut(s) | 287, 542 |
| NlaIII | CATG | 3 cut(s) | 252, 449, 715 |
| NlaIV | GGNNCC | 3 cut(s) | 289, 509, 522 |
| NmeAIII | GCCGAG | 1 cut(s) | 597 |
| NruI | TCGCGA | 1 cut(s) | 387 |
| NsiI | ATGCAT | 1 cut(s) | 254 |
| NspI | RCATGY | 1 cut(s) | 715 |
| PaeI | GCATGC | 1 cut(s) | 715 |
| PauI | GCGCGC | 1 cut(s) | 537 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 27, 190, 768 |
| PdmI | GAANNNNTTC | 1 cut(s) | 484 |
| PfeI | GAWTC | 2 cut(s) | 32, 302 |
| PfoI | TCCNGGA | 1 cut(s) | 664 |
| PinAI | ACCGGT | 2 cut(s) | 148, 353 |
| PkrI | GCNGC | 4 cut(s) | 189, 192, 330, 570 |
| Ppu21I | YACGTR | 1 cut(s) | 236 |
| PpuMI | RGGWCCY | 1 cut(s) | 520 |
| Psp124BI | GAGCTC | 1 cut(s) | 202 |
| Psp5II | RGGWCCY | 1 cut(s) | 520 |
| PspN4I | GGNNCC | 3 cut(s) | 289, 509, 522 |
| PspPI | GGNCC | 6 cut(s) | 4, 151, 277, 520, 679, 741 |
| PspPPI | RGGWCCY | 1 cut(s) | 520 |
| PsuI | RGATCY | 1 cut(s) | 287 |
| PteI | GCGCGC | 1 cut(s) | 537 |
| RruI | TCGCGA | 1 cut(s) | 387 |
| RsaI | GTAC | 1 cut(s) | 398 |
| RsaNI | GTAC | 1 cut(s) | 397 |
| SacI | GAGCTC | 1 cut(s) | 202 |
| SacII | CCGCGG | 1 cut(s) | 44 |
| SaqAI | TTAA | 1 cut(s) | 808 |
| SatI | GCNGC | 4 cut(s) | 188, 191, 329, 569 |
| Sau3AI | GATC | 2 cut(s) | 287, 542 |
| Sau96I | GGNCC | 6 cut(s) | 4, 151, 277, 520, 679, 741 |
| ScrFI | CCNGG | 2 cut(s) | 167, 666 |
| SduI | GDGCHC | 1 cut(s) | 202 |
| SetI | ASST | 9 cut(s) | 133, 202, 238, 366, 398, 412, 586, 593, 774 |
| SfaNI | GCATC | 3 cut(s) | 261, 278, 633 |
| Sfr303I | CCGCGG | 1 cut(s) | 44 |
| SgrAI | CRCCGGYG | 1 cut(s) | 353 |
| SgrBI | CCGCGG | 1 cut(s) | 44 |
| SinI | GGWCC | 2 cut(s) | 151, 520 |
| SphI | GCATGC | 1 cut(s) | 715 |
| Sse9I | AATT | 3 cut(s) | 86, 674, 750 |
| SspI | AATATT | 1 cut(s) | 103 |
| SspMI | CTAG | 2 cut(s) | 266, 722 |
| SstI | GAGCTC | 1 cut(s) | 202 |
| StyD4I | CCNGG | 2 cut(s) | 165, 664 |
| StyI | CCWWGG | 1 cut(s) | 154 |
| TaaI | ACNGT | 1 cut(s) | 210 |
| TaiI | ACGT | 2 cut(s) | 238, 774 |
| TaqI | TCGA | 5 cut(s) | 202, 498, 762, 774, 797 |
| TaqII | GACCGA | 1 cut(s) | 371 |
| TasI | AATT | 3 cut(s) | 86, 674, 750 |
| TauI | GCSGC | 4 cut(s) | 190, 193, 331, 571 |
| TfiI | GAWTC | 2 cut(s) | 32, 302 |
| Tru1I | TTAA | 1 cut(s) | 808 |
| Tru9I | TTAA | 1 cut(s) | 808 |
| TspDTI | ATGAA | 2 cut(s) | 108, 462 |
| VpaK11BI | GGWCC | 2 cut(s) | 151, 520 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 515 |
| XceI | RCATGY | 1 cut(s) | 715 |
| XmnI | GAANNNNTTC | 1 cut(s) | 484 |
| XspI | CTAG | 2 cut(s) | 266, 722 |
| Zsp2I | ATGCAT | 1 cut(s) | 254 |