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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 349 |
| AccBSI | CCGCTC | 1 cut(s) | 627 |
| AccII | CGCG | 4 cut(s) | 127, 256, 342, 598 |
| AciI | CCGC | 5 cut(s) | 340, 449, 558, 603, 625 |
| AclWI | GGATC | 1 cut(s) | 459 |
| AcsI | RAATTY | 1 cut(s) | 279 |
| AfaI | GTAC | 1 cut(s) | 130 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 47, 377 |
| AgsI | TTSAA | 2 cut(s) | 60, 492 |
| AjnI | CCWGG | 5 cut(s) | 165, 209, 364, 516, 583 |
| AluBI | AGCT | 2 cut(s) | 123, 594 |
| AluI | AGCT | 2 cut(s) | 123, 594 |
| Alw26I | GTCTC | 1 cut(s) | 436 |
| AlwI | GGATC | 1 cut(s) | 459 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 584 |
| AoxI | GGCC | 6 cut(s) | 367, 380, 514, 559, 613, 680 |
| ApeKI | GCWGC | 5 cut(s) | 69, 72, 75, 206, 336 |
| ApoI | RAATTY | 1 cut(s) | 279 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 279 |
| AspLEI | GCGC | 2 cut(s) | 216, 350 |
| AspS9I | GGNCC | 4 cut(s) | 38, 368, 380, 472 |
| AsuC2I | CCSGG | 1 cut(s) | 148 |
| AsuHPI | GGTGA | 2 cut(s) | 23, 171 |
| AsuNHI | GCTAGC | 1 cut(s) | 119 |
| AvaII | GGWCC | 2 cut(s) | 38, 472 |
| BanII | GRGCYC | 1 cut(s) | 538 |
| BauI | CACGAG | 1 cut(s) | 406 |
| BbvI | GCAGC | 5 cut(s) | 56, 59, 62, 193, 348 |
| BccI | CCATC | 1 cut(s) | 273 |
| BceAI | ACGGC | 1 cut(s) | 529 |
| BciT130I | CCWGG | 5 cut(s) | 167, 211, 366, 518, 585 |
| BcnI | CCSGG | 1 cut(s) | 148 |
| BcoDI | GTCTC | 1 cut(s) | 436 |
| BfaI | CTAG | 2 cut(s) | 120, 555 |
| BglII | AGATCT | 1 cut(s) | 485 |
| BisI | GCNGC | 8 cut(s) | 70, 73, 76, 207, 337, 340, 559, 625 |
| BlsI | GCNGC | 8 cut(s) | 71, 74, 77, 208, 338, 341, 560, 626 |
| Bme1390I | CCNGG | 6 cut(s) | 148, 167, 211, 366, 518, 585 |
| Bme18I | GGWCC | 2 cut(s) | 38, 472 |
| BmgT120I | GGNCC | 4 cut(s) | 38, 368, 380, 472 |
| BmiI | GGNNCC | 3 cut(s) | 52, 474, 535 |
| BmrFI | CCNGG | 6 cut(s) | 148, 167, 211, 366, 518, 585 |
| BmrI | ACTGGG | 1 cut(s) | 311 |
| BmsI | GCATC | 2 cut(s) | 225, 623 |
| BmtI | GCTAGC | 1 cut(s) | 123 |
| BmuI | ACTGGG | 1 cut(s) | 311 |
| BpmI | CTGGAG | 2 cut(s) | 252, 564 |
| BpuEI | CTTGAG | 2 cut(s) | 543, 574 |
| BpuMI | CCSGG | 1 cut(s) | 148 |
| BsaJI | CCNNGG | 2 cut(s) | 166, 364 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 47, 377 |
| Bse118I | RCCGGY | 1 cut(s) | 23 |
| Bse1I | ACTGG | 4 cut(s) | 94, 115, 317, 637 |
| BseBI | CCWGG | 5 cut(s) | 167, 211, 366, 518, 585 |
| BseDI | CCNNGG | 2 cut(s) | 166, 364 |
| BseGI | GGATG | 2 cut(s) | 143, 216 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 47, 377 |
| BseMII | CTCAG | 3 cut(s) | 231, 262, 591 |
| BseNI | ACTGG | 4 cut(s) | 94, 115, 317, 637 |
| BseRI | GAGGAG | 2 cut(s) | 392, 546 |
| BseXI | GCAGC | 5 cut(s) | 56, 59, 62, 193, 348 |
| Bsh1236I | CGCG | 4 cut(s) | 127, 256, 342, 598 |
| BshFI | GGCC | 6 cut(s) | 369, 382, 516, 561, 615, 682 |
| BsiSI | CCGG | 2 cut(s) | 24, 148 |
| BslFI | GGGAC | 2 cut(s) | 183, 458 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 47, 377 |
| BsmAI | GTCTC | 1 cut(s) | 436 |
| BsmFI | GGGAC | 2 cut(s) | 183, 458 |
| BsnI | GGCC | 6 cut(s) | 369, 382, 516, 561, 615, 682 |
| Bsp1286I | GDGCHC | 1 cut(s) | 538 |
| Bsp143I | GATC | 2 cut(s) | 451, 485 |
| Bsp68I | TCGCGA | 2 cut(s) | 256, 598 |
| BspACI | CCGC | 5 cut(s) | 340, 449, 558, 603, 625 |
| BspANI | GGCC | 6 cut(s) | 369, 382, 516, 561, 615, 682 |
| BspCNI | CTCAG | 3 cut(s) | 232, 263, 590 |
| BspFNI | CGCG | 4 cut(s) | 127, 256, 342, 598 |
| BspHI | TCATGA | 1 cut(s) | 674 |
| BspLI | GGNNCC | 3 cut(s) | 52, 474, 535 |
| BspOI | GCTAGC | 1 cut(s) | 123 |
| BspPI | GGATC | 1 cut(s) | 459 |
| BsrBI | CCGCTC | 1 cut(s) | 627 |
| BsrFI | RCCGGY | 1 cut(s) | 23 |
| BsrI | ACTGG | 4 cut(s) | 94, 115, 317, 637 |
| BssAI | RCCGGY | 1 cut(s) | 23 |
| BssECI | CCNNGG | 2 cut(s) | 166, 364 |
| BssMI | GATC | 2 cut(s) | 451, 485 |
| BssSI | CACGAG | 1 cut(s) | 406 |
| Bst2BI | CACGAG | 1 cut(s) | 406 |
| Bst2UI | CCWGG | 5 cut(s) | 167, 211, 366, 518, 585 |
| Bst4CI | ACNGT | 2 cut(s) | 183, 301 |
| BstC8I | GCNNGC | 7 cut(s) | 121, 125, 258, 262, 352, 596, 622 |
| BstDEI | CTNAG | 3 cut(s) | 240, 271, 577 |
| BstF5I | GGATG | 2 cut(s) | 143, 216 |
| BstFNI | CGCG | 4 cut(s) | 127, 256, 342, 598 |
| BstHHI | GCGC | 2 cut(s) | 216, 350 |
| BstKTI | GATC | 2 cut(s) | 454, 488 |
| BstMAI | GTCTC | 1 cut(s) | 436 |
| BstMBI | GATC | 2 cut(s) | 451, 485 |
| BstNI | CCWGG | 5 cut(s) | 167, 211, 366, 518, 585 |
| BstSCI | CCNGG | 6 cut(s) | 146, 165, 209, 364, 516, 583 |
| BstUI | CGCG | 4 cut(s) | 127, 256, 342, 598 |
| BstV1I | GCAGC | 5 cut(s) | 56, 59, 62, 193, 348 |
| BstX2I | RGATCY | 1 cut(s) | 485 |
| BstYI | RGATCY | 1 cut(s) | 485 |
| BsuRI | GGCC | 6 cut(s) | 369, 382, 516, 561, 615, 682 |
| BtsCI | GGATG | 2 cut(s) | 143, 216 |
| BtsIMutI | CAGTG | 3 cut(s) | 87, 268, 324 |
| BtuMI | TCGCGA | 2 cut(s) | 256, 598 |
| Cac8I | GCNNGC | 7 cut(s) | 121, 125, 258, 262, 352, 596, 622 |
| CaiI | CAGNNNCTG | 1 cut(s) | 584 |
| CciI | TCATGA | 1 cut(s) | 674 |
| CfoI | GCGC | 2 cut(s) | 216, 350 |
| Cfr10I | RCCGGY | 1 cut(s) | 23 |
| Cfr13I | GGNCC | 4 cut(s) | 38, 368, 380, 472 |
| Csp6I | GTAC | 1 cut(s) | 129 |
| CviAII | CATG | 2 cut(s) | 528, 675 |
| CviQI | GTAC | 1 cut(s) | 129 |
| DdeI | CTNAG | 3 cut(s) | 240, 271, 577 |
| DpnI | GATC | 2 cut(s) | 453, 487 |
| DpnII | GATC | 2 cut(s) | 451, 485 |
| Eco24I | GRGCYC | 1 cut(s) | 538 |
| Eco32I | GATATC | 1 cut(s) | 200 |
| Eco47I | GGWCC | 2 cut(s) | 38, 472 |
| EcoO109I | RGGNCCY | 1 cut(s) | 380 |
| EcoRI | GAATTC | 1 cut(s) | 279 |
| EcoRII | CCWGG | 5 cut(s) | 165, 209, 364, 516, 583 |
| EcoRV | GATATC | 1 cut(s) | 200 |
| EcoT38I | GRGCYC | 1 cut(s) | 538 |
| FaeI | CATG | 2 cut(s) | 531, 678 |
| FaiI | YATR | 4 cut(s) | 156, 510, 529, 676 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 25, 57 |
| FaqI | GGGAC | 2 cut(s) | 183, 458 |
| FatI | CATG | 2 cut(s) | 527, 674 |
| Fnu4HI | GCNGC | 8 cut(s) | 70, 73, 76, 207, 337, 340, 559, 625 |
| FokI | GGATG | 2 cut(s) | 130, 203 |
| FriOI | GRGCYC | 1 cut(s) | 538 |
| Fsp4HI | GCNGC | 8 cut(s) | 70, 73, 76, 207, 337, 340, 559, 625 |
| FspBI | CTAG | 2 cut(s) | 120, 555 |
| FspI | TGCGCA | 1 cut(s) | 349 |
| GlaI | GCGC | 2 cut(s) | 215, 349 |
| GluI | GCNGC | 8 cut(s) | 70, 73, 76, 207, 337, 340, 559, 625 |
| GsuI | CTGGAG | 2 cut(s) | 252, 564 |
| HaeIII | GGCC | 6 cut(s) | 369, 382, 516, 561, 615, 682 |
| HapII | CCGG | 2 cut(s) | 24, 148 |
| HhaI | GCGC | 2 cut(s) | 216, 350 |
| Hin1II | CATG | 2 cut(s) | 531, 678 |
| Hin6I | GCGC | 2 cut(s) | 214, 348 |
| HinP1I | GCGC | 2 cut(s) | 214, 348 |
| HinfI | GANTC | 4 cut(s) | 140, 308, 399, 461 |
| HpaII | CCGG | 2 cut(s) | 24, 148 |
| HphI | GGTGA | 2 cut(s) | 23, 171 |
| Hpy166II | GTNNAC | 1 cut(s) | 14 |
| Hpy188I | TCNGA | 4 cut(s) | 241, 566, 580, 609 |
| Hpy188III | TCNNGA | 7 cut(s) | 57, 106, 231, 255, 597, 630, 675 |
| Hpy8I | GTNNAC | 1 cut(s) | 14 |
| Hpy99I | CGWCG | 2 cut(s) | 21, 256 |
| HpyAV | CCTTC | 2 cut(s) | 112, 672 |
| HpyCH4III | ACNGT | 2 cut(s) | 183, 301 |
| HpyCH4IV | ACGT | 1 cut(s) | 16 |
| HpyF3I | CTNAG | 3 cut(s) | 240, 271, 577 |
| HpySE526I | ACGT | 1 cut(s) | 16 |
| Hsp92II | CATG | 2 cut(s) | 531, 678 |
| HspAI | GCGC | 2 cut(s) | 214, 348 |
| Kzo9I | GATC | 2 cut(s) | 451, 485 |
| LmnI | GCTCC | 4 cut(s) | 50, 533, 545, 632 |
| Lsp1109I | GCAGC | 5 cut(s) | 56, 59, 62, 193, 348 |
| LweI | GCATC | 2 cut(s) | 225, 623 |
| MaeI | CTAG | 2 cut(s) | 120, 555 |
| MaeII | ACGT | 1 cut(s) | 16 |
| MaeIII | GTNAC | 2 cut(s) | 137, 301 |
| MalI | GATC | 2 cut(s) | 453, 487 |
| MbiI | CCGCTC | 1 cut(s) | 627 |
| MboI | GATC | 2 cut(s) | 451, 485 |
| MboII | GAAGA | 3 cut(s) | 240, 303, 480 |
| MflI | RGATCY | 1 cut(s) | 485 |
| MhlI | GDGCHC | 1 cut(s) | 538 |
| MluCI | AATT | 2 cut(s) | 279, 498 |
| MlyI | GAGTC | 2 cut(s) | 134, 393 |
| MnlI | CCTC | 8 cut(s) | 64, 109, 235, 393, 413, 524, 572, 593 |
| MroXI | GAANNNNTTC | 1 cut(s) | 279 |
| MseI | TTAA | 3 cut(s) | 223, 501, 669 |
| MspI | CCGG | 2 cut(s) | 24, 148 |
| MspR9I | CCNGG | 6 cut(s) | 148, 167, 211, 366, 518, 585 |
| MvaI | CCWGG | 5 cut(s) | 167, 211, 366, 518, 585 |
| MvnI | CGCG | 4 cut(s) | 127, 256, 342, 598 |
| NciI | CCSGG | 1 cut(s) | 148 |
| NdeII | GATC | 2 cut(s) | 451, 485 |
| NheI | GCTAGC | 1 cut(s) | 119 |
| NlaIII | CATG | 2 cut(s) | 531, 678 |
| NlaIV | GGNNCC | 3 cut(s) | 52, 474, 535 |
| NmeAIII | GCCGAG | 1 cut(s) | 641 |
| NmuCI | GTSAC | 1 cut(s) | 137 |
| NruI | TCGCGA | 2 cut(s) | 256, 598 |
| NsbI | TGCGCA | 1 cut(s) | 349 |
| PagI | TCATGA | 1 cut(s) | 674 |
| PdmI | GAANNNNTTC | 1 cut(s) | 279 |
| PfeI | GAWTC | 2 cut(s) | 308, 461 |
| PfoI | TCCNGGA | 1 cut(s) | 146 |
| PkrI | GCNGC | 8 cut(s) | 71, 74, 77, 208, 338, 341, 560, 626 |
| PleI | GAGTC | 2 cut(s) | 134, 393 |
| PpsI | GAGTC | 2 cut(s) | 134, 393 |
| Psp6I | CCWGG | 5 cut(s) | 165, 209, 364, 516, 583 |
| PspGI | CCWGG | 5 cut(s) | 165, 209, 364, 516, 583 |
| PspN4I | GGNNCC | 3 cut(s) | 52, 474, 535 |
| PspPI | GGNCC | 4 cut(s) | 38, 368, 380, 472 |
| PstNI | CAGNNNCTG | 1 cut(s) | 584 |
| PsuI | RGATCY | 1 cut(s) | 485 |
| RruI | TCGCGA | 2 cut(s) | 256, 598 |
| RsaI | GTAC | 1 cut(s) | 130 |
| RsaNI | GTAC | 1 cut(s) | 129 |
| SaqAI | TTAA | 3 cut(s) | 223, 501, 669 |
| SatI | GCNGC | 8 cut(s) | 70, 73, 76, 207, 337, 340, 559, 625 |
| Sau3AI | GATC | 2 cut(s) | 451, 485 |
| Sau96I | GGNCC | 4 cut(s) | 38, 368, 380, 472 |
| SchI | GAGTC | 2 cut(s) | 134, 393 |
| ScrFI | CCNGG | 6 cut(s) | 148, 167, 211, 366, 518, 585 |
| SduI | GDGCHC | 1 cut(s) | 538 |
| SetI | ASST | 4 cut(s) | 19, 125, 586, 596 |
| SfaNI | GCATC | 2 cut(s) | 225, 623 |
| SinI | GGWCC | 2 cut(s) | 38, 472 |
| SmlI | CTYRAG | 2 cut(s) | 522, 589 |
| SmoI | CTYRAG | 2 cut(s) | 522, 589 |
| Sse9I | AATT | 2 cut(s) | 279, 498 |
| SsiI | CCGC | 5 cut(s) | 340, 449, 558, 603, 625 |
| SspMI | CTAG | 2 cut(s) | 120, 555 |
| StyD4I | CCNGG | 6 cut(s) | 146, 165, 209, 364, 516, 583 |
| TaaI | ACNGT | 2 cut(s) | 183, 301 |
| TaiI | ACGT | 1 cut(s) | 19 |
| TaqI | TCGA | 1 cut(s) | 19 |
| TasI | AATT | 2 cut(s) | 279, 498 |
| TauI | GCSGC | 3 cut(s) | 342, 561, 627 |
| TfiI | GAWTC | 2 cut(s) | 308, 461 |
| Tru1I | TTAA | 3 cut(s) | 223, 501, 669 |
| Tru9I | TTAA | 3 cut(s) | 223, 501, 669 |
| TscAI | CASTG | 3 cut(s) | 94, 275, 324 |
| TseFI | GTSAC | 1 cut(s) | 137 |
| TseI | GCWGC | 5 cut(s) | 69, 72, 75, 206, 336 |
| Tsp45I | GTSAC | 1 cut(s) | 137 |
| TspDTI | ATGAA | 4 cut(s) | 175, 272, 292, 691 |
| TspGWI | ACGGA | 2 cut(s) | 187, 209 |
| TspRI | CASTG | 3 cut(s) | 94, 275, 324 |
| VpaK11BI | GGWCC | 2 cut(s) | 38, 472 |
| XapI | RAATTY | 1 cut(s) | 279 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 644 |
| XmnI | GAANNNNTTC | 1 cut(s) | 279 |
| XspI | CTAG | 2 cut(s) | 120, 555 |