Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 281 |
| AccB1I | GGYRCC | 1 cut(s) | 179 |
| AccII | CGCG | 2 cut(s) | 252, 259 |
| AciI | CCGC | 2 cut(s) | 259, 381 |
| AfeI | AGCGCT | 1 cut(s) | 538 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 335 |
| AjnI | CCWGG | 1 cut(s) | 65 |
| AluBI | AGCT | 1 cut(s) | 56 |
| AluI | AGCT | 1 cut(s) | 56 |
| Alw21I | GWGCWC | 1 cut(s) | 88 |
| Alw26I | GTCTC | 2 cut(s) | 230, 248 |
| Aor51HI | AGCGCT | 1 cut(s) | 538 |
| AoxI | GGCC | 3 cut(s) | 212, 451, 519 |
| ApeKI | GCWGC | 4 cut(s) | 56, 287, 356, 534 |
| AspLEI | GCGC | 2 cut(s) | 230, 539 |
| AspS9I | GGNCC | 3 cut(s) | 63, 213, 520 |
| AsuC2I | CCSGG | 1 cut(s) | 151 |
| AsuHPI | GGTGA | 2 cut(s) | 104, 289 |
| AvaII | GGWCC | 1 cut(s) | 63 |
| BaeGI | GKGCMC | 2 cut(s) | 184, 265 |
| BanI | GGYRCC | 1 cut(s) | 179 |
| BanII | GRGCYC | 1 cut(s) | 474 |
| BauI | CACGAG | 2 cut(s) | 264, 330 |
| BbsI | GAAGAC | 1 cut(s) | 168 |
| Bbv12I | GWGCWC | 1 cut(s) | 88 |
| BbvI | GCAGC | 4 cut(s) | 43, 299, 343, 546 |
| BccI | CCATC | 4 cut(s) | 330, 452, 467, 555 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 38, 72 |
| BciT130I | CCWGG | 1 cut(s) | 67 |
| BcnI | CCSGG | 1 cut(s) | 151 |
| BcoDI | GTCTC | 2 cut(s) | 230, 248 |
| BfaI | CTAG | 2 cut(s) | 98, 272 |
| BfoI | RGCGCY | 1 cut(s) | 540 |
| BfuAI | ACCTGC | 1 cut(s) | 281 |
| BglII | AGATCT | 2 cut(s) | 268, 404 |
| BisI | GCNGC | 4 cut(s) | 57, 288, 357, 535 |
| BlsI | GCNGC | 4 cut(s) | 58, 289, 358, 536 |
| Bme1390I | CCNGG | 2 cut(s) | 67, 151 |
| Bme18I | GGWCC | 1 cut(s) | 63 |
| BmgT120I | GGNCC | 3 cut(s) | 63, 213, 520 |
| BmiI | GGNNCC | 2 cut(s) | 6, 181 |
| BmrFI | CCNGG | 2 cut(s) | 67, 151 |
| BmsI | GCATC | 1 cut(s) | 87 |
| BpiI | GAAGAC | 1 cut(s) | 168 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 409, 441 |
| BpuMI | CCSGG | 1 cut(s) | 151 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaJI | CCNNGG | 2 cut(s) | 66, 516 |
| BsaWI | WCCGGW | 1 cut(s) | 596 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 108, 138, 139, 169 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 335 |
| Bse1I | ACTGG | 1 cut(s) | 454 |
| BseBI | CCWGG | 1 cut(s) | 67 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 2 cut(s) | 66, 516 |
| BseGI | GGATG | 1 cut(s) | 435 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 335 |
| BseNI | ACTGG | 1 cut(s) | 454 |
| BseRI | GAGGAG | 1 cut(s) | 208 |
| BseSI | GKGCMC | 2 cut(s) | 184, 265 |
| BseXI | GCAGC | 4 cut(s) | 43, 299, 343, 546 |
| BseYI | CCCAGC | 1 cut(s) | 522 |
| Bsh1236I | CGCG | 2 cut(s) | 252, 259 |
| Bsh1285I | CGRYCG | 1 cut(s) | 597 |
| BshFI | GGCC | 3 cut(s) | 214, 453, 521 |
| BshNI | GGYRCC | 1 cut(s) | 179 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 1 cut(s) | 597 |
| BsiHKAI | GWGCWC | 1 cut(s) | 88 |
| BsiSI | CCGG | 2 cut(s) | 150, 597 |
| BslFI | GGGAC | 2 cut(s) | 83, 166 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 335 |
| BsmAI | GTCTC | 2 cut(s) | 230, 248 |
| BsmBI | CGTCTC | 1 cut(s) | 248 |
| BsmFI | GGGAC | 2 cut(s) | 83, 166 |
| BsmI | GAATGC | 2 cut(s) | 90, 289 |
| BsnI | GGCC | 3 cut(s) | 214, 453, 521 |
| Bsp1286I | GDGCHC | 4 cut(s) | 88, 184, 265, 474 |
| Bsp143I | GATC | 3 cut(s) | 28, 268, 404 |
| Bsp19I | CCATGG | 1 cut(s) | 516 |
| Bsp68I | TCGCGA | 1 cut(s) | 252 |
| BspACI | CCGC | 2 cut(s) | 259, 381 |
| BspANI | GGCC | 3 cut(s) | 214, 453, 521 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspFNI | CGCG | 2 cut(s) | 252, 259 |
| BspLI | GGNNCC | 2 cut(s) | 6, 181 |
| BspMI | ACCTGC | 1 cut(s) | 281 |
| BspT107I | GGYRCC | 1 cut(s) | 179 |
| BsrI | ACTGG | 1 cut(s) | 454 |
| BssECI | CCNNGG | 2 cut(s) | 66, 516 |
| BssMI | GATC | 3 cut(s) | 28, 268, 404 |
| BssSI | CACGAG | 2 cut(s) | 264, 330 |
| BssT1I | CCWWGG | 1 cut(s) | 516 |
| Bst2BI | CACGAG | 2 cut(s) | 264, 330 |
| Bst2UI | CCWGG | 1 cut(s) | 67 |
| Bst4CI | ACNGT | 1 cut(s) | 578 |
| BstC8I | GCNNGC | 5 cut(s) | 88, 261, 347, 470, 567 |
| BstDEI | CTNAG | 1 cut(s) | 12 |
| BstDSI | CCRYGG | 1 cut(s) | 516 |
| BstF5I | GGATG | 1 cut(s) | 435 |
| BstFNI | CGCG | 2 cut(s) | 252, 259 |
| BstH2I | RGCGCY | 1 cut(s) | 540 |
| BstHHI | GCGC | 2 cut(s) | 230, 539 |
| BstKTI | GATC | 3 cut(s) | 31, 271, 407 |
| BstMAI | GTCTC | 2 cut(s) | 230, 248 |
| BstMBI | GATC | 3 cut(s) | 28, 268, 404 |
| BstMCI | CGRYCG | 1 cut(s) | 597 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 478 |
| BstNI | CCWGG | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 65, 149 |
| BstSLI | GKGCMC | 2 cut(s) | 184, 265 |
| BstUI | CGCG | 2 cut(s) | 252, 259 |
| BstV1I | GCAGC | 4 cut(s) | 43, 299, 343, 546 |
| BstV2I | GAAGAC | 1 cut(s) | 168 |
| BstX2I | RGATCY | 2 cut(s) | 268, 404 |
| BstYI | RGATCY | 2 cut(s) | 268, 404 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuRI | GGCC | 3 cut(s) | 214, 453, 521 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgI | CCRYGG | 1 cut(s) | 516 |
| BtsCI | GGATG | 1 cut(s) | 435 |
| BtsIMutI | CAGTG | 1 cut(s) | 447 |
| BtuMI | TCGCGA | 1 cut(s) | 252 |
| BveI | ACCTGC | 1 cut(s) | 281 |
| Cac8I | GCNNGC | 5 cut(s) | 88, 261, 347, 470, 567 |
| CfoI | GCGC | 2 cut(s) | 230, 539 |
| Cfr13I | GGNCC | 3 cut(s) | 63, 213, 520 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CseI | GACGC | 1 cut(s) | 265 |
| CviAII | CATG | 2 cut(s) | 482, 517 |
| CviJI | RGCY | 9 cut(s) | 5, 56, 197, 214, 453, 472, 521, 565, 625 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 56, 197, 214, 453, 472, 521, 565, 625 |
| DdeI | CTNAG | 1 cut(s) | 12 |
| DpnI | GATC | 3 cut(s) | 30, 270, 406 |
| DpnII | GATC | 3 cut(s) | 28, 268, 404 |
| Eco130I | CCWWGG | 1 cut(s) | 516 |
| Eco24I | GRGCYC | 1 cut(s) | 474 |
| Eco47I | GGWCC | 1 cut(s) | 63 |
| Eco47III | AGCGCT | 1 cut(s) | 538 |
| EcoRII | CCWGG | 1 cut(s) | 65 |
| EcoT14I | CCWWGG | 1 cut(s) | 516 |
| EcoT38I | GRGCYC | 1 cut(s) | 474 |
| ErhI | CCWWGG | 1 cut(s) | 516 |
| Esp3I | CGTCTC | 1 cut(s) | 248 |
| FaeI | CATG | 2 cut(s) | 485, 520 |
| FaiI | YATR | 7 cut(s) | 477, 483, 518, 543, 553, 571, 588 |
| FaqI | GGGAC | 2 cut(s) | 83, 166 |
| FatI | CATG | 2 cut(s) | 481, 516 |
| FauI | CCCGC | 1 cut(s) | 252 |
| Fnu4HI | GCNGC | 4 cut(s) | 57, 288, 357, 535 |
| FokI | GGATG | 1 cut(s) | 422 |
| FriOI | GRGCYC | 1 cut(s) | 474 |
| Fsp4HI | GCNGC | 4 cut(s) | 57, 288, 357, 535 |
| FspBI | CTAG | 2 cut(s) | 98, 272 |
| GlaI | GCGC | 2 cut(s) | 229, 538 |
| GluI | GCNGC | 4 cut(s) | 57, 288, 357, 535 |
| GsaI | CCCAGC | 1 cut(s) | 526 |
| HaeII | RGCGCY | 1 cut(s) | 540 |
| HaeIII | GGCC | 3 cut(s) | 214, 453, 521 |
| HapII | CCGG | 2 cut(s) | 150, 597 |
| HgaI | GACGC | 1 cut(s) | 265 |
| HhaI | GCGC | 2 cut(s) | 230, 539 |
| Hin1II | CATG | 2 cut(s) | 485, 520 |
| Hin6I | GCGC | 2 cut(s) | 228, 537 |
| HinP1I | GCGC | 2 cut(s) | 228, 537 |
| HinfI | GANTC | 3 cut(s) | 154, 494, 603 |
| HpaII | CCGG | 2 cut(s) | 150, 597 |
| HphI | GGTGA | 2 cut(s) | 104, 289 |
| Hpy188I | TCNGA | 2 cut(s) | 63, 629 |
| Hpy188III | TCNNGA | 6 cut(s) | 32, 98, 158, 251, 373, 581 |
| HpyAV | CCTTC | 1 cut(s) | 137 |
| HpyCH4III | ACNGT | 1 cut(s) | 578 |
| HpyCH4V | TGCA | 2 cut(s) | 287, 481 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 478 |
| HpyF3I | CTNAG | 1 cut(s) | 12 |
| Hsp92II | CATG | 2 cut(s) | 485, 520 |
| HspAI | GCGC | 2 cut(s) | 228, 537 |
| Kzo9I | GATC | 3 cut(s) | 28, 268, 404 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| Lsp1109I | GCAGC | 4 cut(s) | 43, 299, 343, 546 |
| LweI | GCATC | 1 cut(s) | 87 |
| MaeI | CTAG | 2 cut(s) | 98, 272 |
| MaeIII | GTNAC | 1 cut(s) | 421 |
| MalI | GATC | 3 cut(s) | 30, 270, 406 |
| MboI | GATC | 3 cut(s) | 28, 268, 404 |
| MboII | GAAGA | 4 cut(s) | 47, 50, 173, 317 |
| MflI | RGATCY | 2 cut(s) | 268, 404 |
| MhlI | GDGCHC | 4 cut(s) | 88, 184, 265, 474 |
| MluCI | AATT | 3 cut(s) | 41, 208, 488 |
| MlyI | GAGTC | 2 cut(s) | 148, 488 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| MnlI | CCTC | 6 cut(s) | 18, 226, 229, 339, 374, 593 |
| MseI | TTAA | 1 cut(s) | 44 |
| MspI | CCGG | 2 cut(s) | 150, 597 |
| MspR9I | CCNGG | 2 cut(s) | 67, 151 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 289 |
| MvaI | CCWGG | 1 cut(s) | 67 |
| MvnI | CGCG | 2 cut(s) | 252, 259 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 478 |
| NciI | CCSGG | 1 cut(s) | 151 |
| NcoI | CCATGG | 1 cut(s) | 516 |
| NdeII | GATC | 3 cut(s) | 28, 268, 404 |
| NlaIII | CATG | 2 cut(s) | 485, 520 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 181 |
| NruI | TCGCGA | 1 cut(s) | 252 |
| PctI | GAATGC | 2 cut(s) | 90, 289 |
| PfeI | GAWTC | 1 cut(s) | 603 |
| PflFI | GACNNNGTC | 1 cut(s) | 497 |
| PkrI | GCNGC | 4 cut(s) | 58, 289, 358, 536 |
| PleI | GAGTC | 2 cut(s) | 148, 488 |
| PpsI | GAGTC | 2 cut(s) | 148, 488 |
| Psp6I | CCWGG | 1 cut(s) | 65 |
| PspFI | CCCAGC | 1 cut(s) | 522 |
| PspGI | CCWGG | 1 cut(s) | 65 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 181 |
| PspPI | GGNCC | 3 cut(s) | 63, 213, 520 |
| PsuI | RGATCY | 2 cut(s) | 268, 404 |
| PsyI | GACNNNGTC | 1 cut(s) | 497 |
| RruI | TCGCGA | 1 cut(s) | 252 |
| SaqAI | TTAA | 1 cut(s) | 44 |
| SatI | GCNGC | 4 cut(s) | 57, 288, 357, 535 |
| Sau3AI | GATC | 3 cut(s) | 28, 268, 404 |
| Sau96I | GGNCC | 3 cut(s) | 63, 213, 520 |
| SchI | GAGTC | 2 cut(s) | 148, 488 |
| ScrFI | CCNGG | 2 cut(s) | 67, 151 |
| SduI | GDGCHC | 4 cut(s) | 88, 184, 265, 474 |
| SetI | ASST | 5 cut(s) | 58, 68, 277, 295, 532 |
| SfaNI | GCATC | 1 cut(s) | 87 |
| SinI | GGWCC | 1 cut(s) | 63 |
| SmlI | CTYRAG | 1 cut(s) | 614 |
| SmoI | CTYRAG | 1 cut(s) | 614 |
| Sse9I | AATT | 3 cut(s) | 41, 208, 488 |
| SsiI | CCGC | 2 cut(s) | 259, 381 |
| SspMI | CTAG | 2 cut(s) | 98, 272 |
| StyD4I | CCNGG | 2 cut(s) | 65, 149 |
| StyI | CCWWGG | 1 cut(s) | 516 |
| TaaI | ACNGT | 1 cut(s) | 578 |
| TaqI | TCGA | 4 cut(s) | 27, 462, 501, 512 |
| TasI | AATT | 3 cut(s) | 41, 208, 488 |
| TfiI | GAWTC | 1 cut(s) | 603 |
| Tru1I | TTAA | 1 cut(s) | 44 |
| Tru9I | TTAA | 1 cut(s) | 44 |
| TscAI | CASTG | 1 cut(s) | 454 |
| TseI | GCWGC | 4 cut(s) | 56, 287, 356, 534 |
| TspDTI | ATGAA | 2 cut(s) | 83, 540 |
| TspRI | CASTG | 1 cut(s) | 454 |
| Tth111I | GACNNNGTC | 1 cut(s) | 497 |
| VpaK11BI | GGWCC | 1 cut(s) | 63 |
| XbaI | TCTAGA | 1 cut(s) | 97 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 329 |
| XspI | CTAG | 2 cut(s) | 98, 272 |