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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 83 |
| AccI | GTMKAC | 1 cut(s) | 216 |
| AccII | CGCG | 4 cut(s) | 166, 270, 338, 345 |
| AciI | CCGC | 5 cut(s) | 56, 88, 161, 164, 179 |
| AcoI | YGGCCR | 1 cut(s) | 297 |
| AcyI | GRCGYC | 1 cut(s) | 185 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 66, 67 |
| AflIII | ACRYGT | 1 cut(s) | 145 |
| AjnI | CCWGG | 1 cut(s) | 328 |
| AluBI | AGCT | 1 cut(s) | 324 |
| AluI | AGCT | 1 cut(s) | 324 |
| Alw21I | GWGCWC | 1 cut(s) | 326 |
| AoxI | GGCC | 3 cut(s) | 57, 157, 297 |
| ApeKI | GCWGC | 1 cut(s) | 315 |
| AspLEI | GCGC | 3 cut(s) | 270, 315, 345 |
| AspS9I | GGNCC | 2 cut(s) | 58, 158 |
| BaeGI | GKGCMC | 1 cut(s) | 88 |
| BalI | TGGCCA | 1 cut(s) | 299 |
| BanI | GGYRCC | 1 cut(s) | 83 |
| BanII | GRGCYC | 1 cut(s) | 326 |
| Bbv12I | GWGCWC | 1 cut(s) | 326 |
| BbvI | GCAGC | 1 cut(s) | 327 |
| BccI | CCATC | 2 cut(s) | 196, 308 |
| BciT130I | CCWGG | 1 cut(s) | 330 |
| BfaI | CTAG | 2 cut(s) | 155, 358 |
| BglII | AGATCT | 1 cut(s) | 354 |
| BisI | GCNGC | 3 cut(s) | 57, 164, 316 |
| BlsI | GCNGC | 3 cut(s) | 58, 165, 317 |
| Bme1390I | CCNGG | 1 cut(s) | 330 |
| BmgT120I | GGNCC | 2 cut(s) | 58, 158 |
| BmiI | GGNNCC | 2 cut(s) | 6, 85 |
| BmrFI | CCNGG | 1 cut(s) | 330 |
| BsaHI | GRCGYC | 1 cut(s) | 185 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 66, 67 |
| Bse3DI | GCAATG | 1 cut(s) | 300 |
| BseBI | CCWGG | 1 cut(s) | 330 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 66, 67 |
| BseMI | GCAATG | 1 cut(s) | 300 |
| BseRI | GAGGAG | 1 cut(s) | 116 |
| BseSI | GKGCMC | 1 cut(s) | 88 |
| BseXI | GCAGC | 1 cut(s) | 327 |
| Bsh1236I | CGCG | 4 cut(s) | 166, 270, 338, 345 |
| BshFI | GGCC | 3 cut(s) | 59, 159, 299 |
| BshNI | GGYRCC | 1 cut(s) | 83 |
| BsiHKAI | GWGCWC | 1 cut(s) | 326 |
| BsiSI | CCGG | 1 cut(s) | 319 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 66, 67 |
| BsmI | GAATGC | 1 cut(s) | 90 |
| BsnI | GGCC | 3 cut(s) | 59, 159, 299 |
| Bsp1286I | GDGCHC | 2 cut(s) | 88, 326 |
| Bsp143I | GATC | 1 cut(s) | 354 |
| Bsp68I | TCGCGA | 1 cut(s) | 338 |
| BspACI | CCGC | 5 cut(s) | 56, 88, 161, 164, 179 |
| BspANI | GGCC | 3 cut(s) | 59, 159, 299 |
| BspFNI | CGCG | 4 cut(s) | 166, 270, 338, 345 |
| BspLI | GGNNCC | 2 cut(s) | 6, 85 |
| BspT107I | GGYRCC | 1 cut(s) | 83 |
| BsrDI | GCAATG | 1 cut(s) | 300 |
| BssMI | GATC | 1 cut(s) | 354 |
| BssNI | GRCGYC | 1 cut(s) | 185 |
| Bst2UI | CCWGG | 1 cut(s) | 330 |
| BstACI | GRCGYC | 1 cut(s) | 185 |
| BstC8I | GCNNGC | 4 cut(s) | 88, 161, 205, 347 |
| BstFNI | CGCG | 4 cut(s) | 166, 270, 338, 345 |
| BstHHI | GCGC | 3 cut(s) | 270, 315, 345 |
| BstKTI | GATC | 1 cut(s) | 357 |
| BstMBI | GATC | 1 cut(s) | 354 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 321 |
| BstNI | CCWGG | 1 cut(s) | 330 |
| BstNSI | RCATGY | 1 cut(s) | 149 |
| BstSCI | CCNGG | 1 cut(s) | 328 |
| BstSLI | GKGCMC | 1 cut(s) | 88 |
| BstUI | CGCG | 4 cut(s) | 166, 270, 338, 345 |
| BstV1I | GCAGC | 1 cut(s) | 327 |
| BstX2I | RGATCY | 1 cut(s) | 354 |
| BstYI | RGATCY | 1 cut(s) | 354 |
| BsuRI | GGCC | 3 cut(s) | 59, 159, 299 |
| BtgZI | GCGATG | 1 cut(s) | 174 |
| BtuMI | TCGCGA | 1 cut(s) | 338 |
| Cac8I | GCNNGC | 4 cut(s) | 88, 161, 205, 347 |
| CfoI | GCGC | 3 cut(s) | 270, 315, 345 |
| Cfr13I | GGNCC | 2 cut(s) | 58, 158 |
| CseI | GACGC | 1 cut(s) | 193 |
| CviAII | CATG | 1 cut(s) | 146 |
| CviJI | RGCY | 7 cut(s) | 5, 59, 159, 203, 299, 318, 324 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 59, 159, 203, 299, 318, 324 |
| DpnI | GATC | 1 cut(s) | 356 |
| DpnII | GATC | 1 cut(s) | 354 |
| EaeI | YGGCCR | 1 cut(s) | 297 |
| Ecl136II | GAGCTC | 1 cut(s) | 324 |
| Eco24I | GRGCYC | 1 cut(s) | 326 |
| Eco53kI | GAGCTC | 1 cut(s) | 324 |
| EcoICRI | GAGCTC | 1 cut(s) | 324 |
| EcoRII | CCWGG | 1 cut(s) | 328 |
| EcoT38I | GRGCYC | 1 cut(s) | 326 |
| FaeI | CATG | 1 cut(s) | 149 |
| FaiI | YATR | 2 cut(s) | 147, 200 |
| FatI | CATG | 1 cut(s) | 145 |
| FauI | CCCGC | 3 cut(s) | 95, 168, 186 |
| FblI | GTMKAC | 1 cut(s) | 216 |
| Fnu4HI | GCNGC | 3 cut(s) | 57, 164, 316 |
| FriOI | GRGCYC | 1 cut(s) | 326 |
| Fsp4HI | GCNGC | 3 cut(s) | 57, 164, 316 |
| FspBI | CTAG | 2 cut(s) | 155, 358 |
| GlaI | GCGC | 3 cut(s) | 269, 314, 344 |
| GluI | GCNGC | 3 cut(s) | 57, 164, 316 |
| HaeIII | GGCC | 3 cut(s) | 59, 159, 299 |
| HapII | CCGG | 1 cut(s) | 319 |
| HgaI | GACGC | 1 cut(s) | 193 |
| HhaI | GCGC | 3 cut(s) | 270, 315, 345 |
| Hin1I | GRCGYC | 1 cut(s) | 185 |
| Hin1II | CATG | 1 cut(s) | 149 |
| Hin6I | GCGC | 3 cut(s) | 268, 313, 343 |
| HinP1I | GCGC | 3 cut(s) | 268, 313, 343 |
| HincII | GTYRAC | 1 cut(s) | 217 |
| HindII | GTYRAC | 1 cut(s) | 217 |
| HinfI | GANTC | 4 cut(s) | 139, 170, 240, 272 |
| HpaII | CCGG | 1 cut(s) | 319 |
| Hpy166II | GTNNAC | 1 cut(s) | 217 |
| Hpy188I | TCNGA | 2 cut(s) | 152, 235 |
| Hpy188III | TCNNGA | 2 cut(s) | 136, 337 |
| Hpy8I | GTNNAC | 1 cut(s) | 217 |
| Hpy99I | CGWCG | 2 cut(s) | 187, 218 |
| HpyAV | CCTTC | 2 cut(s) | 204, 230 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 321 |
| Hsp92I | GRCGYC | 1 cut(s) | 185 |
| Hsp92II | CATG | 1 cut(s) | 149 |
| HspAI | GCGC | 3 cut(s) | 268, 313, 343 |
| Kzo9I | GATC | 1 cut(s) | 354 |
| LmnI | GCTCC | 2 cut(s) | 10, 321 |
| LpnPI | CCDG | 4 cut(s) | 38, 315, 332, 342 |
| Lsp1109I | GCAGC | 1 cut(s) | 327 |
| MaeI | CTAG | 2 cut(s) | 155, 358 |
| MalI | GATC | 1 cut(s) | 356 |
| MboI | GATC | 1 cut(s) | 354 |
| MboII | GAAGA | 3 cut(s) | 47, 50, 295 |
| MflI | RGATCY | 1 cut(s) | 354 |
| MhlI | GDGCHC | 2 cut(s) | 88, 326 |
| MlsI | TGGCCA | 1 cut(s) | 299 |
| MluCI | AATT | 1 cut(s) | 131 |
| MluNI | TGGCCA | 1 cut(s) | 299 |
| MlyI | GAGTC | 1 cut(s) | 234 |
| MmeI | TCCRAC | 1 cut(s) | 130 |
| MnlI | CCTC | 2 cut(s) | 137, 241 |
| Mox20I | TGGCCA | 1 cut(s) | 299 |
| MscI | TGGCCA | 1 cut(s) | 299 |
| Msp20I | TGGCCA | 1 cut(s) | 299 |
| MspI | CCGG | 1 cut(s) | 319 |
| MspR9I | CCNGG | 1 cut(s) | 330 |
| Mva1269I | GAATGC | 1 cut(s) | 90 |
| MvaI | CCWGG | 1 cut(s) | 330 |
| MvnI | CGCG | 4 cut(s) | 166, 270, 338, 345 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 321 |
| NdeII | GATC | 1 cut(s) | 354 |
| NlaIII | CATG | 1 cut(s) | 149 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 85 |
| NruI | TCGCGA | 1 cut(s) | 338 |
| NspI | RCATGY | 1 cut(s) | 149 |
| PciI | ACATGT | 1 cut(s) | 145 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 342 |
| PctI | GAATGC | 1 cut(s) | 90 |
| PfeI | GAWTC | 3 cut(s) | 139, 170, 272 |
| PkrI | GCNGC | 3 cut(s) | 58, 165, 317 |
| PleI | GAGTC | 1 cut(s) | 234 |
| PpsI | GAGTC | 1 cut(s) | 234 |
| PscI | ACATGT | 1 cut(s) | 145 |
| Psp124BI | GAGCTC | 1 cut(s) | 326 |
| Psp6I | CCWGG | 1 cut(s) | 328 |
| PspGI | CCWGG | 1 cut(s) | 328 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 85 |
| PspPI | GGNCC | 2 cut(s) | 58, 158 |
| PsuI | RGATCY | 1 cut(s) | 354 |
| RruI | TCGCGA | 1 cut(s) | 338 |
| SacI | GAGCTC | 1 cut(s) | 326 |
| SalI | GTCGAC | 1 cut(s) | 215 |
| SatI | GCNGC | 3 cut(s) | 57, 164, 316 |
| Sau3AI | GATC | 1 cut(s) | 354 |
| Sau96I | GGNCC | 2 cut(s) | 58, 158 |
| SchI | GAGTC | 1 cut(s) | 234 |
| ScrFI | CCNGG | 1 cut(s) | 330 |
| SduI | GDGCHC | 2 cut(s) | 88, 326 |
| SetI | ASST | 1 cut(s) | 326 |
| Sse9I | AATT | 1 cut(s) | 131 |
| SsiI | CCGC | 5 cut(s) | 56, 88, 161, 164, 179 |
| SspMI | CTAG | 2 cut(s) | 155, 358 |
| SstI | GAGCTC | 1 cut(s) | 326 |
| StyD4I | CCNGG | 1 cut(s) | 328 |
| TaqI | TCGA | 4 cut(s) | 27, 142, 216, 278 |
| TasI | AATT | 1 cut(s) | 131 |
| TauI | GCSGC | 2 cut(s) | 59, 166 |
| TfiI | GAWTC | 3 cut(s) | 139, 170, 272 |
| TseI | GCWGC | 1 cut(s) | 315 |
| TspDTI | ATGAA | 2 cut(s) | 63, 83 |
| XceI | RCATGY | 1 cut(s) | 149 |
| XmiI | GTMKAC | 1 cut(s) | 216 |
| XspI | CTAG | 2 cut(s) | 155, 358 |