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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 282 |
| Acc65I | GGTACC | 1 cut(s) | 760 |
| AccB1I | GGYRCC | 1 cut(s) | 760 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 51 |
| AccI | GTMKAC | 2 cut(s) | 86, 690 |
| AccII | CGCG | 3 cut(s) | 433, 503, 660 |
| AciI | CCGC | 5 cut(s) | 431, 456, 501, 682, 805 |
| AclWI | GGATC | 6 cut(s) | 113, 127, 383, 396, 444, 457 |
| AcoI | YGGCCR | 1 cut(s) | 267 |
| AfaI | GTAC | 4 cut(s) | 229, 252, 499, 762 |
| AfeI | AGCGCT | 1 cut(s) | 642 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 51, 471 |
| AgeI | ACCGGT | 1 cut(s) | 272 |
| AluBI | AGCT | 1 cut(s) | 712 |
| AluI | AGCT | 1 cut(s) | 712 |
| Alw21I | GWGCWC | 2 cut(s) | 68, 714 |
| Alw26I | GTCTC | 1 cut(s) | 831 |
| AlwI | GGATC | 6 cut(s) | 113, 127, 383, 396, 444, 457 |
| Ama87I | CYCGRG | 1 cut(s) | 644 |
| Aor51HI | AGCGCT | 1 cut(s) | 642 |
| AoxI | GGCC | 3 cut(s) | 267, 648, 767 |
| ApeKI | GCWGC | 1 cut(s) | 377 |
| AsiGI | ACCGGT | 1 cut(s) | 272 |
| Asp718I | GGTACC | 1 cut(s) | 760 |
| AspLEI | GCGC | 4 cut(s) | 358, 505, 643, 662 |
| AspS9I | GGNCC | 3 cut(s) | 55, 409, 751 |
| AsuC2I | CCSGG | 2 cut(s) | 578, 615 |
| AsuHPI | GGTGA | 2 cut(s) | 592, 644 |
| AvaI | CYCGRG | 1 cut(s) | 644 |
| AvaII | GGWCC | 3 cut(s) | 55, 409, 751 |
| BaeGI | GKGCMC | 1 cut(s) | 125 |
| BamHI | GGATCC | 2 cut(s) | 388, 449 |
| BanI | GGYRCC | 1 cut(s) | 760 |
| BanII | GRGCYC | 1 cut(s) | 714 |
| Bbv12I | GWGCWC | 2 cut(s) | 68, 714 |
| BbvI | GCAGC | 1 cut(s) | 389 |
| BccI | CCATC | 5 cut(s) | 53, 516, 596, 671, 751 |
| BceAI | ACGGC | 1 cut(s) | 144 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 366, 400, 698, 732 |
| BcnI | CCSGG | 2 cut(s) | 578, 615 |
| BcoDI | GTCTC | 1 cut(s) | 831 |
| BfaI | CTAG | 1 cut(s) | 470 |
| BfoI | RGCGCY | 1 cut(s) | 644 |
| BisI | GCNGC | 2 cut(s) | 378, 431 |
| BlsI | GCNGC | 2 cut(s) | 379, 432 |
| Bme1390I | CCNGG | 2 cut(s) | 578, 615 |
| Bme18I | GGWCC | 3 cut(s) | 55, 409, 751 |
| BmeT110I | CYCGRG | 1 cut(s) | 644 |
| BmgT120I | GGNCC | 3 cut(s) | 55, 409, 751 |
| BmiI | GGNNCC | 7 cut(s) | 56, 57, 259, 390, 451, 476, 762 |
| BmrFI | CCNGG | 2 cut(s) | 578, 615 |
| BmsI | GCATC | 3 cut(s) | 163, 532, 541 |
| BpuEI | CTTGAG | 3 cut(s) | 218, 617, 797 |
| BpuMI | CCSGG | 2 cut(s) | 578, 615 |
| Bsa29I | ATCGAT | 1 cut(s) | 48 |
| BsaI | GGTCTC | 1 cut(s) | 831 |
| BsaJI | CCNNGG | 2 cut(s) | 301, 764 |
| BsaWI | WCCGGW | 3 cut(s) | 16, 179, 272 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 51, 471 |
| Bse118I | RCCGGY | 2 cut(s) | 272, 477 |
| Bse1I | ACTGG | 1 cut(s) | 753 |
| BseCI | ATCGAT | 1 cut(s) | 48 |
| BseDI | CCNNGG | 2 cut(s) | 301, 764 |
| BseGI | GGATG | 3 cut(s) | 508, 607, 678 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 51, 471 |
| BseNI | ACTGG | 1 cut(s) | 753 |
| BseSI | GKGCMC | 1 cut(s) | 125 |
| BseXI | GCAGC | 1 cut(s) | 389 |
| Bsh1236I | CGCG | 3 cut(s) | 433, 503, 660 |
| Bsh1285I | CGRYCG | 1 cut(s) | 180 |
| BshFI | GGCC | 3 cut(s) | 269, 650, 769 |
| BshNI | GGYRCC | 1 cut(s) | 760 |
| BshTI | ACCGGT | 1 cut(s) | 272 |
| BshVI | ATCGAT | 1 cut(s) | 48 |
| BsiEI | CGRYCG | 1 cut(s) | 180 |
| BsiHKAI | GWGCWC | 2 cut(s) | 68, 714 |
| BsiHKCI | CYCGRG | 1 cut(s) | 644 |
| BsiSI | CCGG | 8 cut(s) | 17, 180, 237, 273, 478, 546, 577, 615 |
| BslFI | GGGAC | 1 cut(s) | 68 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 51, 471 |
| BsmAI | GTCTC | 1 cut(s) | 831 |
| BsmFI | GGGAC | 1 cut(s) | 68 |
| BsnI | GGCC | 3 cut(s) | 269, 650, 769 |
| Bso31I | GGTCTC | 1 cut(s) | 831 |
| BsoBI | CYCGRG | 1 cut(s) | 644 |
| Bsp1286I | GDGCHC | 3 cut(s) | 68, 125, 714 |
| Bsp143I | GATC | 6 cut(s) | 105, 132, 388, 449, 694, 809 |
| BspACI | CCGC | 5 cut(s) | 431, 456, 501, 682, 805 |
| BspANI | GGCC | 3 cut(s) | 269, 650, 769 |
| BspDI | ATCGAT | 1 cut(s) | 48 |
| BspFNI | CGCG | 3 cut(s) | 433, 503, 660 |
| BspLI | GGNNCC | 7 cut(s) | 56, 57, 259, 390, 451, 476, 762 |
| BspPI | GGATC | 6 cut(s) | 113, 127, 383, 396, 444, 457 |
| BspT107I | GGYRCC | 1 cut(s) | 760 |
| BspTNI | GGTCTC | 1 cut(s) | 831 |
| BsrFI | RCCGGY | 2 cut(s) | 272, 477 |
| BsrI | ACTGG | 1 cut(s) | 753 |
| BssAI | RCCGGY | 2 cut(s) | 272, 477 |
| BssECI | CCNNGG | 2 cut(s) | 301, 764 |
| BssMI | GATC | 6 cut(s) | 105, 132, 388, 449, 694, 809 |
| BssT1I | CCWWGG | 2 cut(s) | 301, 764 |
| Bst4CI | ACNGT | 5 cut(s) | 70, 141, 161, 250, 632 |
| Bst6I | CTCTTC | 1 cut(s) | 238 |
| BstC8I | GCNNGC | 1 cut(s) | 736 |
| BstF5I | GGATG | 3 cut(s) | 508, 607, 678 |
| BstFNI | CGCG | 3 cut(s) | 433, 503, 660 |
| BstH2I | RGCGCY | 1 cut(s) | 644 |
| BstHHI | GCGC | 4 cut(s) | 358, 505, 643, 662 |
| BstKTI | GATC | 6 cut(s) | 108, 135, 391, 452, 697, 812 |
| BstMAI | GTCTC | 1 cut(s) | 831 |
| BstMBI | GATC | 6 cut(s) | 105, 132, 388, 449, 694, 809 |
| BstMCI | CGRYCG | 1 cut(s) | 180 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 430, 551, 647 |
| BstSCI | CCNGG | 2 cut(s) | 576, 613 |
| BstSLI | GKGCMC | 1 cut(s) | 125 |
| BstUI | CGCG | 3 cut(s) | 433, 503, 660 |
| BstV1I | GCAGC | 1 cut(s) | 389 |
| BstX2I | RGATCY | 2 cut(s) | 388, 449 |
| BstYI | RGATCY | 2 cut(s) | 388, 449 |
| Bsu15I | ATCGAT | 1 cut(s) | 48 |
| BsuRI | GGCC | 3 cut(s) | 269, 650, 769 |
| BsuTUI | ATCGAT | 1 cut(s) | 48 |
| BtsCI | GGATG | 3 cut(s) | 508, 607, 678 |
| Cac8I | GCNNGC | 1 cut(s) | 736 |
| CfoI | GCGC | 4 cut(s) | 358, 505, 643, 662 |
| Cfr10I | RCCGGY | 2 cut(s) | 272, 477 |
| Cfr13I | GGNCC | 3 cut(s) | 55, 409, 751 |
| ClaI | ATCGAT | 1 cut(s) | 48 |
| Csp6I | GTAC | 4 cut(s) | 228, 251, 498, 761 |
| CspAI | ACCGGT | 1 cut(s) | 272 |
| CviAII | CATG | 2 cut(s) | 61, 821 |
| CviQI | GTAC | 4 cut(s) | 228, 251, 498, 761 |
| DpnI | GATC | 6 cut(s) | 107, 134, 390, 451, 696, 811 |
| DpnII | GATC | 6 cut(s) | 105, 132, 388, 449, 694, 809 |
| EaeI | YGGCCR | 1 cut(s) | 267 |
| Eam1104I | CTCTTC | 1 cut(s) | 238 |
| EarI | CTCTTC | 1 cut(s) | 238 |
| EciI | GGCGGA | 2 cut(s) | 671, 820 |
| Ecl136II | GAGCTC | 1 cut(s) | 712 |
| Eco130I | CCWWGG | 2 cut(s) | 301, 764 |
| Eco147I | AGGCCT | 1 cut(s) | 650 |
| Eco24I | GRGCYC | 1 cut(s) | 714 |
| Eco31I | GGTCTC | 1 cut(s) | 831 |
| Eco32I | GATATC | 2 cut(s) | 373, 585 |
| Eco47I | GGWCC | 3 cut(s) | 55, 409, 751 |
| Eco47III | AGCGCT | 1 cut(s) | 642 |
| Eco53kI | GAGCTC | 1 cut(s) | 712 |
| Eco88I | CYCGRG | 1 cut(s) | 644 |
| EcoICRI | GAGCTC | 1 cut(s) | 712 |
| EcoO109I | RGGNCCY | 1 cut(s) | 55 |
| EcoRV | GATATC | 2 cut(s) | 373, 585 |
| EcoT14I | CCWWGG | 2 cut(s) | 301, 764 |
| EcoT38I | GRGCYC | 1 cut(s) | 714 |
| ErhI | CCWWGG | 2 cut(s) | 301, 764 |
| FaeI | CATG | 2 cut(s) | 64, 824 |
| FaiI | YATR | 6 cut(s) | 8, 62, 282, 701, 717, 822 |
| FaqI | GGGAC | 1 cut(s) | 68 |
| FatI | CATG | 2 cut(s) | 60, 820 |
| FauI | CCCGC | 1 cut(s) | 463 |
| FblI | GTMKAC | 2 cut(s) | 86, 690 |
| Fnu4HI | GCNGC | 2 cut(s) | 378, 431 |
| FokI | GGATG | 3 cut(s) | 495, 614, 665 |
| FriOI | GRGCYC | 1 cut(s) | 714 |
| Fsp4HI | GCNGC | 2 cut(s) | 378, 431 |
| FspBI | CTAG | 1 cut(s) | 470 |
| GlaI | GCGC | 4 cut(s) | 357, 504, 642, 661 |
| GluI | GCNGC | 2 cut(s) | 378, 431 |
| HaeII | RGCGCY | 1 cut(s) | 644 |
| HaeIII | GGCC | 3 cut(s) | 269, 650, 769 |
| HapII | CCGG | 8 cut(s) | 17, 180, 237, 273, 478, 546, 577, 615 |
| HhaI | GCGC | 4 cut(s) | 358, 505, 643, 662 |
| Hin1II | CATG | 2 cut(s) | 64, 824 |
| Hin6I | GCGC | 4 cut(s) | 356, 503, 641, 660 |
| HinP1I | GCGC | 4 cut(s) | 356, 503, 641, 660 |
| HincII | GTYRAC | 2 cut(s) | 87, 691 |
| HindII | GTYRAC | 2 cut(s) | 87, 691 |
| HinfI | GANTC | 1 cut(s) | 461 |
| HpaII | CCGG | 8 cut(s) | 17, 180, 237, 273, 478, 546, 577, 615 |
| HphI | GGTGA | 2 cut(s) | 592, 644 |
| Hpy166II | GTNNAC | 4 cut(s) | 87, 164, 691, 848 |
| Hpy188I | TCNGA | 3 cut(s) | 388, 814, 839 |
| Hpy188III | TCNNGA | 1 cut(s) | 754 |
| Hpy8I | GTNNAC | 4 cut(s) | 87, 164, 691, 848 |
| Hpy99I | CGWCG | 4 cut(s) | 145, 438, 660, 695 |
| HpyAV | CCTTC | 5 cut(s) | 202, 370, 393, 476, 598 |
| HpyCH4III | ACNGT | 5 cut(s) | 70, 141, 161, 250, 632 |
| HpyCH4IV | ACGT | 1 cut(s) | 703 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 430, 551, 647 |
| HpySE526I | ACGT | 1 cut(s) | 703 |
| Hsp92II | CATG | 2 cut(s) | 64, 824 |
| HspAI | GCGC | 4 cut(s) | 356, 503, 641, 660 |
| KflI | GGGWCCC | 1 cut(s) | 55 |
| KpnI | GGTACC | 1 cut(s) | 764 |
| Kzo9I | GATC | 6 cut(s) | 105, 132, 388, 449, 694, 809 |
| LmnI | GCTCC | 2 cut(s) | 339, 510 |
| Lsp1109I | GCAGC | 1 cut(s) | 389 |
| LweI | GCATC | 3 cut(s) | 163, 532, 541 |
| MaeI | CTAG | 1 cut(s) | 470 |
| MaeII | ACGT | 1 cut(s) | 703 |
| MaeIII | GTNAC | 1 cut(s) | 704 |
| MalI | GATC | 6 cut(s) | 107, 134, 390, 451, 696, 811 |
| MboI | GATC | 6 cut(s) | 105, 132, 388, 449, 694, 809 |
| MboII | GAAGA | 1 cut(s) | 225 |
| MflI | RGATCY | 2 cut(s) | 388, 449 |
| MhlI | GDGCHC | 3 cut(s) | 68, 125, 714 |
| MluCI | AATT | 1 cut(s) | 73 |
| MlyI | GAGTC | 1 cut(s) | 455 |
| MmeI | TCCRAC | 1 cut(s) | 653 |
| MnlI | CCTC | 7 cut(s) | 176, 241, 272, 430, 440, 592, 640 |
| MspI | CCGG | 8 cut(s) | 17, 180, 237, 273, 478, 546, 577, 615 |
| MspR9I | CCNGG | 2 cut(s) | 578, 615 |
| MvnI | CGCG | 3 cut(s) | 433, 503, 660 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 430, 551, 647 |
| NciI | CCSGG | 2 cut(s) | 578, 615 |
| NdeII | GATC | 6 cut(s) | 105, 132, 388, 449, 694, 809 |
| NlaIII | CATG | 2 cut(s) | 64, 824 |
| NlaIV | GGNNCC | 7 cut(s) | 56, 57, 259, 390, 451, 476, 762 |
| NmeAIII | GCCGAG | 1 cut(s) | 245 |
| PaeR7I | CTCGAG | 1 cut(s) | 644 |
| PceI | AGGCCT | 1 cut(s) | 650 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 51 |
| PinAI | ACCGGT | 1 cut(s) | 272 |
| PkrI | GCNGC | 2 cut(s) | 379, 432 |
| PleI | GAGTC | 1 cut(s) | 455 |
| PpsI | GAGTC | 1 cut(s) | 455 |
| PpuMI | RGGWCCY | 1 cut(s) | 55 |
| PsiI | TTATAA | 1 cut(s) | 282 |
| Psp124BI | GAGCTC | 1 cut(s) | 714 |
| Psp5II | RGGWCCY | 1 cut(s) | 55 |
| PspN4I | GGNNCC | 7 cut(s) | 56, 57, 259, 390, 451, 476, 762 |
| PspPI | GGNCC | 3 cut(s) | 55, 409, 751 |
| PspPPI | RGGWCCY | 1 cut(s) | 55 |
| PspXI | VCTCGAGB | 1 cut(s) | 644 |
| PsuI | RGATCY | 2 cut(s) | 388, 449 |
| RsaI | GTAC | 4 cut(s) | 229, 252, 499, 762 |
| RsaNI | GTAC | 4 cut(s) | 228, 251, 498, 761 |
| SacI | GAGCTC | 1 cut(s) | 714 |
| SalI | GTCGAC | 2 cut(s) | 85, 689 |
| SatI | GCNGC | 2 cut(s) | 378, 431 |
| Sau3AI | GATC | 6 cut(s) | 105, 132, 388, 449, 694, 809 |
| Sau96I | GGNCC | 3 cut(s) | 55, 409, 751 |
| SchI | GAGTC | 1 cut(s) | 455 |
| ScrFI | CCNGG | 2 cut(s) | 578, 615 |
| SduI | GDGCHC | 3 cut(s) | 68, 125, 714 |
| SetI | ASST | 5 cut(s) | 233, 414, 706, 714, 766 |
| SfaNI | GCATC | 3 cut(s) | 163, 532, 541 |
| Sfr274I | CTCGAG | 1 cut(s) | 644 |
| SinI | GGWCC | 3 cut(s) | 55, 409, 751 |
| SlaI | CTCGAG | 1 cut(s) | 644 |
| SmlI | CTYRAG | 4 cut(s) | 197, 596, 644, 776 |
| SmoI | CTYRAG | 4 cut(s) | 197, 596, 644, 776 |
| Sse9I | AATT | 1 cut(s) | 73 |
| SseBI | AGGCCT | 1 cut(s) | 650 |
| SsiI | CCGC | 5 cut(s) | 431, 456, 501, 682, 805 |
| SspMI | CTAG | 1 cut(s) | 470 |
| SstI | GAGCTC | 1 cut(s) | 714 |
| StuI | AGGCCT | 1 cut(s) | 650 |
| StyD4I | CCNGG | 2 cut(s) | 576, 613 |
| StyI | CCWWGG | 2 cut(s) | 301, 764 |
| TaaI | ACNGT | 5 cut(s) | 70, 141, 161, 250, 632 |
| TaiI | ACGT | 1 cut(s) | 706 |
| TaqI | TCGA | 5 cut(s) | 48, 86, 363, 645, 690 |
| TasI | AATT | 1 cut(s) | 73 |
| TauI | GCSGC | 1 cut(s) | 433 |
| TseI | GCWGC | 1 cut(s) | 377 |
| TspDTI | ATGAA | 2 cut(s) | 95, 208 |
| TspGWI | ACGGA | 2 cut(s) | 422, 507 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 51 |
| VpaK11BI | GGWCC | 3 cut(s) | 55, 409, 751 |
| XhoI | CTCGAG | 1 cut(s) | 644 |
| XmiI | GTMKAC | 2 cut(s) | 86, 690 |
| XspI | CTAG | 1 cut(s) | 470 |