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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 383 |
| AccII | CGCG | 1 cut(s) | 17 |
| AccIII | TCCGGA | 1 cut(s) | 536 |
| AciI | CCGC | 7 cut(s) | 17, 60, 82, 302, 441, 477, 521 |
| AcyI | GRCGYC | 2 cut(s) | 363, 384 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 41, 236, 441, 536 |
| AgeI | ACCGGT | 2 cut(s) | 175, 464 |
| AgsI | TTSAA | 1 cut(s) | 308 |
| AluBI | AGCT | 2 cut(s) | 32, 347 |
| AluI | AGCT | 2 cut(s) | 32, 347 |
| Alw21I | GWGCWC | 1 cut(s) | 24 |
| Ama87I | CYCGRG | 1 cut(s) | 342 |
| Aor13HI | TCCGGA | 1 cut(s) | 536 |
| AoxI | GGCC | 3 cut(s) | 3, 161, 226 |
| ApaI | GGGCCC | 1 cut(s) | 165 |
| ApeKI | GCWGC | 2 cut(s) | 29, 506 |
| AsiGI | ACCGGT | 2 cut(s) | 175, 464 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 478 |
| AspLEI | GCGC | 4 cut(s) | 17, 171, 280, 386 |
| AspS9I | GGNCC | 5 cut(s) | 4, 122, 161, 162, 227 |
| AsuC2I | CCSGG | 4 cut(s) | 137, 266, 294, 401 |
| AsuHPI | GGTGA | 2 cut(s) | 415, 464 |
| AvaI | CYCGRG | 1 cut(s) | 342 |
| AvaII | GGWCC | 1 cut(s) | 122 |
| BaeGI | GKGCMC | 1 cut(s) | 165 |
| BanI | GGYRCC | 1 cut(s) | 383 |
| BanII | GRGCYC | 2 cut(s) | 165, 425 |
| Bbv12I | GWGCWC | 1 cut(s) | 24 |
| BbvI | GCAGC | 2 cut(s) | 41, 493 |
| BceAI | ACGGC | 1 cut(s) | 42 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 200, 221, 234, 255 |
| BcnI | CCSGG | 4 cut(s) | 137, 266, 294, 401 |
| BfaI | CTAG | 1 cut(s) | 550 |
| BfmI | CTRYAG | 1 cut(s) | 348 |
| BfoI | RGCGCY | 3 cut(s) | 172, 281, 387 |
| BisI | GCNGC | 2 cut(s) | 30, 507 |
| BlsI | GCNGC | 2 cut(s) | 31, 508 |
| Bme1390I | CCNGG | 4 cut(s) | 137, 266, 294, 401 |
| Bme18I | GGWCC | 1 cut(s) | 122 |
| BmeT110I | CYCGRG | 1 cut(s) | 342 |
| BmgT120I | GGNCC | 5 cut(s) | 4, 122, 161, 162, 227 |
| BmiI | GGNNCC | 6 cut(s) | 163, 180, 229, 247, 385, 492 |
| BmrFI | CCNGG | 4 cut(s) | 137, 266, 294, 401 |
| BmsI | GCATC | 1 cut(s) | 289 |
| BpuEI | CTTGAG | 1 cut(s) | 111 |
| BpuMI | CCSGG | 4 cut(s) | 137, 266, 294, 401 |
| BsaHI | GRCGYC | 2 cut(s) | 363, 384 |
| BsaWI | WCCGGW | 4 cut(s) | 175, 236, 464, 536 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 16, 46, 436, 466 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 41, 236, 441, 536 |
| Bse118I | RCCGGY | 3 cut(s) | 78, 175, 464 |
| BseAI | TCCGGA | 1 cut(s) | 536 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 41, 236, 441, 536 |
| BseSI | GKGCMC | 1 cut(s) | 165 |
| BseXI | GCAGC | 2 cut(s) | 41, 493 |
| BsgI | GTGCAG | 1 cut(s) | 261 |
| Bsh1236I | CGCG | 1 cut(s) | 17 |
| Bsh1285I | CGRYCG | 1 cut(s) | 79 |
| BshFI | GGCC | 3 cut(s) | 5, 163, 228 |
| BshNI | GGYRCC | 1 cut(s) | 383 |
| BshTI | ACCGGT | 2 cut(s) | 175, 464 |
| BsiEI | CGRYCG | 1 cut(s) | 79 |
| BsiHKAI | GWGCWC | 1 cut(s) | 24 |
| BsiHKCI | CYCGRG | 1 cut(s) | 342 |
| BsiSI | CCGG | 9 cut(s) | 79, 136, 176, 237, 266, 294, 401, 465, 537 |
| BslFI | GGGAC | 1 cut(s) | 248 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 41, 236, 441, 536 |
| BsmFI | GGGAC | 1 cut(s) | 248 |
| BsnI | GGCC | 3 cut(s) | 5, 163, 228 |
| BsoBI | CYCGRG | 1 cut(s) | 342 |
| Bsp120I | GGGCCC | 1 cut(s) | 161 |
| Bsp1286I | GDGCHC | 3 cut(s) | 24, 165, 425 |
| Bsp13I | TCCGGA | 1 cut(s) | 536 |
| BspACI | CCGC | 7 cut(s) | 17, 60, 82, 302, 441, 477, 521 |
| BspANI | GGCC | 3 cut(s) | 5, 163, 228 |
| BspEI | TCCGGA | 1 cut(s) | 536 |
| BspFNI | CGCG | 1 cut(s) | 17 |
| BspLI | GGNNCC | 6 cut(s) | 163, 180, 229, 247, 385, 492 |
| BspT107I | GGYRCC | 1 cut(s) | 383 |
| BsrFI | RCCGGY | 3 cut(s) | 78, 175, 464 |
| BssAI | RCCGGY | 3 cut(s) | 78, 175, 464 |
| BssNI | GRCGYC | 2 cut(s) | 363, 384 |
| Bst4CI | ACNGT | 3 cut(s) | 44, 204, 262 |
| BstACI | GRCGYC | 2 cut(s) | 363, 384 |
| BstDEI | CTNAG | 1 cut(s) | 95 |
| BstFNI | CGCG | 1 cut(s) | 17 |
| BstH2I | RGCGCY | 3 cut(s) | 172, 281, 387 |
| BstHHI | GCGC | 4 cut(s) | 17, 171, 280, 386 |
| BstMCI | CGRYCG | 1 cut(s) | 79 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 275, 374, 383, 392, 429, 438, 506 |
| BstSCI | CCNGG | 4 cut(s) | 135, 264, 292, 399 |
| BstSFI | CTRYAG | 1 cut(s) | 348 |
| BstSLI | GKGCMC | 1 cut(s) | 165 |
| BstUI | CGCG | 1 cut(s) | 17 |
| BstV1I | GCAGC | 2 cut(s) | 41, 493 |
| BsuRI | GGCC | 3 cut(s) | 5, 163, 228 |
| BtgZI | GCGATG | 1 cut(s) | 312 |
| BtsIMutI | CAGTG | 1 cut(s) | 258 |
| CfoI | GCGC | 4 cut(s) | 17, 171, 280, 386 |
| Cfr10I | RCCGGY | 3 cut(s) | 78, 175, 464 |
| Cfr13I | GGNCC | 5 cut(s) | 4, 122, 161, 162, 227 |
| CseI | GACGC | 1 cut(s) | 352 |
| CspAI | ACCGGT | 2 cut(s) | 175, 464 |
| CviAII | CATG | 1 cut(s) | 429 |
| DdeI | CTNAG | 1 cut(s) | 95 |
| DinI | GGCGCC | 1 cut(s) | 385 |
| EciI | GGCGGA | 1 cut(s) | 97 |
| Eco24I | GRGCYC | 2 cut(s) | 165, 425 |
| Eco47I | GGWCC | 1 cut(s) | 122 |
| Eco88I | CYCGRG | 1 cut(s) | 342 |
| EcoO109I | RGGNCCY | 2 cut(s) | 122, 161 |
| EcoT38I | GRGCYC | 2 cut(s) | 165, 425 |
| EgeI | GGCGCC | 1 cut(s) | 385 |
| EheI | GGCGCC | 1 cut(s) | 385 |
| FaeI | CATG | 1 cut(s) | 432 |
| FaiI | YATR | 8 cut(s) | 38, 119, 219, 350, 371, 430, 525, 527 |
| FaqI | GGGAC | 1 cut(s) | 248 |
| FatI | CATG | 1 cut(s) | 428 |
| FauI | CCCGC | 1 cut(s) | 434 |
| FauNDI | CATATG | 1 cut(s) | 525 |
| Fnu4HI | GCNGC | 2 cut(s) | 30, 507 |
| FriOI | GRGCYC | 2 cut(s) | 165, 425 |
| Fsp4HI | GCNGC | 2 cut(s) | 30, 507 |
| FspBI | CTAG | 1 cut(s) | 550 |
| GlaI | GCGC | 4 cut(s) | 16, 170, 279, 385 |
| GluI | GCNGC | 2 cut(s) | 30, 507 |
| HaeII | RGCGCY | 3 cut(s) | 172, 281, 387 |
| HaeIII | GGCC | 3 cut(s) | 5, 163, 228 |
| HapII | CCGG | 9 cut(s) | 79, 136, 176, 237, 266, 294, 401, 465, 537 |
| HgaI | GACGC | 1 cut(s) | 352 |
| HhaI | GCGC | 4 cut(s) | 17, 171, 280, 386 |
| Hin1I | GRCGYC | 2 cut(s) | 363, 384 |
| Hin1II | CATG | 1 cut(s) | 432 |
| Hin6I | GCGC | 4 cut(s) | 15, 169, 278, 384 |
| HinP1I | GCGC | 4 cut(s) | 15, 169, 278, 384 |
| HincII | GTYRAC | 1 cut(s) | 414 |
| HindII | GTYRAC | 1 cut(s) | 414 |
| HinfI | GANTC | 2 cut(s) | 233, 284 |
| HpaI | GTTAAC | 1 cut(s) | 414 |
| HpaII | CCGG | 9 cut(s) | 79, 136, 176, 237, 266, 294, 401, 465, 537 |
| HphI | GGTGA | 2 cut(s) | 415, 464 |
| Hpy166II | GTNNAC | 2 cut(s) | 414, 455 |
| Hpy188III | TCNNGA | 5 cut(s) | 128, 308, 335, 435, 537 |
| Hpy8I | GTNNAC | 2 cut(s) | 414, 455 |
| Hpy99I | CGWCG | 2 cut(s) | 368, 462 |
| HpyAV | CCTTC | 4 cut(s) | 101, 341, 441, 543 |
| HpyCH4III | ACNGT | 3 cut(s) | 44, 204, 262 |
| HpyCH4IV | ACGT | 1 cut(s) | 457 |
| HpyCH4V | TGCA | 2 cut(s) | 221, 242 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 275, 374, 383, 392, 429, 438, 506 |
| HpyF3I | CTNAG | 1 cut(s) | 95 |
| HpySE526I | ACGT | 1 cut(s) | 457 |
| Hsp92I | GRCGYC | 2 cut(s) | 363, 384 |
| Hsp92II | CATG | 1 cut(s) | 432 |
| HspAI | GCGC | 4 cut(s) | 15, 169, 278, 384 |
| KasI | GGCGCC | 1 cut(s) | 383 |
| Kpn2I | TCCGGA | 1 cut(s) | 536 |
| KspAI | GTTAAC | 1 cut(s) | 414 |
| LmnI | GCTCC | 3 cut(s) | 37, 437, 490 |
| Lsp1109I | GCAGC | 2 cut(s) | 41, 493 |
| LweI | GCATC | 1 cut(s) | 289 |
| MaeI | CTAG | 1 cut(s) | 550 |
| MaeII | ACGT | 1 cut(s) | 457 |
| MfeI | CAATTG | 1 cut(s) | 222 |
| MhlI | GDGCHC | 3 cut(s) | 24, 165, 425 |
| MluCI | AATT | 3 cut(s) | 85, 222, 288 |
| Mly113I | GGCGCC | 1 cut(s) | 384 |
| MlyI | GAGTC | 1 cut(s) | 278 |
| MmeI | TCCRAC | 1 cut(s) | 451 |
| MnlI | CCTC | 7 cut(s) | 135, 200, 206, 346, 351, 504, 540 |
| MroI | TCCGGA | 1 cut(s) | 536 |
| MroXI | GAANNNNTTC | 1 cut(s) | 478 |
| MseI | TTAA | 1 cut(s) | 413 |
| MspI | CCGG | 9 cut(s) | 79, 136, 176, 237, 266, 294, 401, 465, 537 |
| MspR9I | CCNGG | 4 cut(s) | 137, 266, 294, 401 |
| MunI | CAATTG | 1 cut(s) | 222 |
| MvnI | CGCG | 1 cut(s) | 17 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 275, 374, 383, 392, 429, 438, 506 |
| NarI | GGCGCC | 1 cut(s) | 384 |
| NciI | CCSGG | 4 cut(s) | 137, 266, 294, 401 |
| NdeI | CATATG | 1 cut(s) | 525 |
| NlaIII | CATG | 1 cut(s) | 432 |
| NlaIV | GGNNCC | 6 cut(s) | 163, 180, 229, 247, 385, 492 |
| PaeR7I | CTCGAG | 1 cut(s) | 342 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 478 |
| PfeI | GAWTC | 1 cut(s) | 233 |
| PinAI | ACCGGT | 2 cut(s) | 175, 464 |
| PkrI | GCNGC | 2 cut(s) | 31, 508 |
| PleI | GAGTC | 1 cut(s) | 278 |
| PluTI | GGCGCC | 1 cut(s) | 387 |
| PpsI | GAGTC | 1 cut(s) | 278 |
| PpuMI | RGGWCCY | 1 cut(s) | 122 |
| Psp5II | RGGWCCY | 1 cut(s) | 122 |
| PspN4I | GGNNCC | 6 cut(s) | 163, 180, 229, 247, 385, 492 |
| PspOMI | GGGCCC | 1 cut(s) | 161 |
| PspPI | GGNCC | 5 cut(s) | 4, 122, 161, 162, 227 |
| PspPPI | RGGWCCY | 1 cut(s) | 122 |
| PspXI | VCTCGAGB | 1 cut(s) | 342 |
| SaqAI | TTAA | 1 cut(s) | 413 |
| SatI | GCNGC | 2 cut(s) | 30, 507 |
| Sau96I | GGNCC | 5 cut(s) | 4, 122, 161, 162, 227 |
| SchI | GAGTC | 1 cut(s) | 278 |
| ScrFI | CCNGG | 4 cut(s) | 137, 266, 294, 401 |
| SduI | GDGCHC | 3 cut(s) | 24, 165, 425 |
| SetI | ASST | 5 cut(s) | 34, 124, 198, 349, 460 |
| SfaNI | GCATC | 1 cut(s) | 289 |
| SfcI | CTRYAG | 1 cut(s) | 348 |
| SfoI | GGCGCC | 1 cut(s) | 385 |
| Sfr274I | CTCGAG | 1 cut(s) | 342 |
| SinI | GGWCC | 1 cut(s) | 122 |
| SlaI | CTCGAG | 1 cut(s) | 342 |
| SmlI | CTYRAG | 2 cut(s) | 126, 342 |
| SmoI | CTYRAG | 2 cut(s) | 126, 342 |
| Sse9I | AATT | 3 cut(s) | 85, 222, 288 |
| SsiI | CCGC | 7 cut(s) | 17, 60, 82, 302, 441, 477, 521 |
| SspDI | GGCGCC | 1 cut(s) | 383 |
| SspMI | CTAG | 1 cut(s) | 550 |
| StyD4I | CCNGG | 4 cut(s) | 135, 264, 292, 399 |
| TaaI | ACNGT | 3 cut(s) | 44, 204, 262 |
| TaiI | ACGT | 1 cut(s) | 460 |
| TaqI | TCGA | 2 cut(s) | 343, 460 |
| TasI | AATT | 3 cut(s) | 85, 222, 288 |
| TfiI | GAWTC | 1 cut(s) | 233 |
| Tru1I | TTAA | 1 cut(s) | 413 |
| Tru9I | TTAA | 1 cut(s) | 413 |
| TscAI | CASTG | 1 cut(s) | 265 |
| TseI | GCWGC | 2 cut(s) | 29, 506 |
| TspDTI | ATGAA | 1 cut(s) | 422 |
| TspGWI | ACGGA | 1 cut(s) | 286 |
| TspRI | CASTG | 1 cut(s) | 265 |
| VpaK11BI | GGWCC | 1 cut(s) | 122 |
| XhoI | CTCGAG | 1 cut(s) | 342 |
| XmnI | GAANNNNTTC | 1 cut(s) | 478 |
| XspI | CTAG | 1 cut(s) | 550 |