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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 266 |
| AccB1I | GGYRCC | 1 cut(s) | 83 |
| AccBSI | CCGCTC | 1 cut(s) | 337 |
| AccII | CGCG | 4 cut(s) | 237, 244, 250, 544 |
| AciI | CCGC | 9 cut(s) | 88, 244, 314, 321, 335, 366, 542, 585, 691 |
| AcoI | YGGCCR | 1 cut(s) | 688 |
| AcsI | RAATTY | 1 cut(s) | 617 |
| AfaI | GTAC | 1 cut(s) | 655 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 320, 449 |
| AflII | CTTAAG | 1 cut(s) | 385 |
| AgsI | TTSAA | 1 cut(s) | 46 |
| Alw21I | GWGCWC | 1 cut(s) | 573 |
| Alw26I | GTCTC | 2 cut(s) | 215, 264 |
| Ama87I | CYCGRG | 1 cut(s) | 704 |
| AoxI | GGCC | 4 cut(s) | 205, 504, 675, 688 |
| ApeKI | GCWGC | 3 cut(s) | 272, 341, 519 |
| ApoI | RAATTY | 1 cut(s) | 617 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 374, 406 |
| AspLEI | GCGC | 1 cut(s) | 524 |
| AspS9I | GGNCC | 3 cut(s) | 158, 505, 676 |
| AsuC2I | CCSGG | 1 cut(s) | 566 |
| AsuHPI | GGTGA | 2 cut(s) | 424, 484 |
| AvaI | CYCGRG | 1 cut(s) | 704 |
| AvaII | GGWCC | 1 cut(s) | 158 |
| BaeGI | GKGCMC | 1 cut(s) | 88 |
| BanI | GGYRCC | 1 cut(s) | 83 |
| BanII | GRGCYC | 1 cut(s) | 705 |
| Bbv12I | GWGCWC | 1 cut(s) | 573 |
| BbvI | GCAGC | 3 cut(s) | 284, 328, 531 |
| BccI | CCATC | 4 cut(s) | 120, 315, 443, 540 |
| BceAI | ACGGC | 4 cut(s) | 220, 334, 690, 703 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 176, 210 |
| BcnI | CCSGG | 1 cut(s) | 566 |
| BcoDI | GTCTC | 2 cut(s) | 215, 264 |
| BfaI | CTAG | 1 cut(s) | 668 |
| BfoI | RGCGCY | 1 cut(s) | 525 |
| BfrI | CTTAAG | 1 cut(s) | 385 |
| BfuAI | ACCTGC | 1 cut(s) | 266 |
| BglII | AGATCT | 1 cut(s) | 253 |
| BisI | GCNGC | 6 cut(s) | 273, 322, 335, 342, 520, 691 |
| BlsI | GCNGC | 6 cut(s) | 274, 323, 336, 343, 521, 692 |
| Bme1390I | CCNGG | 1 cut(s) | 566 |
| Bme18I | GGWCC | 1 cut(s) | 158 |
| BmeT110I | CYCGRG | 1 cut(s) | 704 |
| BmgT120I | GGNCC | 3 cut(s) | 158, 505, 676 |
| BmiI | GGNNCC | 3 cut(s) | 6, 85, 159 |
| BmrFI | CCNGG | 1 cut(s) | 566 |
| BmrI | ACTGGG | 1 cut(s) | 164 |
| BmsI | GCATC | 1 cut(s) | 163 |
| BmuI | ACTGGG | 1 cut(s) | 164 |
| BpuMI | CCSGG | 1 cut(s) | 566 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 294 |
| BsaJI | CCNNGG | 1 cut(s) | 501 |
| BsaWI | WCCGGW | 1 cut(s) | 149 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 108, 138, 593, 623 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 66, 67, 320, 449 |
| Bse118I | RCCGGY | 2 cut(s) | 434, 581 |
| Bse1I | ACTGG | 2 cut(s) | 159, 655 |
| BseCI | ATCGAT | 2 cut(s) | 27, 294 |
| BseDI | CCNNGG | 1 cut(s) | 501 |
| BseGI | GGATG | 1 cut(s) | 635 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 320, 449 |
| BseNI | ACTGG | 2 cut(s) | 159, 655 |
| BseSI | GKGCMC | 1 cut(s) | 88 |
| BseX3I | CGGCCG | 1 cut(s) | 688 |
| BseXI | GCAGC | 3 cut(s) | 284, 328, 531 |
| BseYI | CCCAGC | 1 cut(s) | 507 |
| BsgI | GTGCAG | 1 cut(s) | 613 |
| Bsh1236I | CGCG | 4 cut(s) | 237, 244, 250, 544 |
| Bsh1285I | CGRYCG | 3 cut(s) | 517, 582, 691 |
| BshFI | GGCC | 4 cut(s) | 207, 506, 677, 690 |
| BshNI | GGYRCC | 1 cut(s) | 83 |
| BshVI | ATCGAT | 2 cut(s) | 27, 294 |
| BsiEI | CGRYCG | 3 cut(s) | 517, 582, 691 |
| BsiHKAI | GWGCWC | 1 cut(s) | 573 |
| BsiHKCI | CYCGRG | 1 cut(s) | 704 |
| BsiSI | CCGG | 4 cut(s) | 150, 435, 565, 582 |
| BslFI | GGGAC | 2 cut(s) | 171, 200 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 320, 449 |
| BsmAI | GTCTC | 2 cut(s) | 215, 264 |
| BsmFI | GGGAC | 2 cut(s) | 171, 200 |
| BsmI | GAATGC | 2 cut(s) | 90, 274 |
| BsnI | GGCC | 4 cut(s) | 207, 506, 677, 690 |
| BsoBI | CYCGRG | 1 cut(s) | 704 |
| Bsp1286I | GDGCHC | 3 cut(s) | 88, 573, 705 |
| Bsp143I | GATC | 3 cut(s) | 28, 54, 253 |
| Bsp19I | CCATGG | 1 cut(s) | 501 |
| Bsp68I | TCGCGA | 1 cut(s) | 237 |
| BspACI | CCGC | 9 cut(s) | 88, 244, 314, 321, 335, 366, 542, 585, 691 |
| BspANI | GGCC | 4 cut(s) | 207, 506, 677, 690 |
| BspDI | ATCGAT | 2 cut(s) | 27, 294 |
| BspFNI | CGCG | 4 cut(s) | 237, 244, 250, 544 |
| BspLI | GGNNCC | 3 cut(s) | 6, 85, 159 |
| BspMI | ACCTGC | 1 cut(s) | 266 |
| BspT107I | GGYRCC | 1 cut(s) | 83 |
| BspTI | CTTAAG | 1 cut(s) | 385 |
| BsrBI | CCGCTC | 1 cut(s) | 337 |
| BsrFI | RCCGGY | 2 cut(s) | 434, 581 |
| BsrI | ACTGG | 2 cut(s) | 159, 655 |
| BssAI | RCCGGY | 2 cut(s) | 434, 581 |
| BssECI | CCNNGG | 1 cut(s) | 501 |
| BssMI | GATC | 3 cut(s) | 28, 54, 253 |
| BssT1I | CCWWGG | 1 cut(s) | 501 |
| Bst4CI | ACNGT | 2 cut(s) | 515, 530 |
| BstAFI | CTTAAG | 1 cut(s) | 385 |
| BstC8I | GCNNGC | 4 cut(s) | 88, 339, 440, 644 |
| BstDSI | CCRYGG | 1 cut(s) | 501 |
| BstF5I | GGATG | 1 cut(s) | 635 |
| BstFNI | CGCG | 4 cut(s) | 237, 244, 250, 544 |
| BstH2I | RGCGCY | 1 cut(s) | 525 |
| BstHHI | GCGC | 1 cut(s) | 524 |
| BstKTI | GATC | 3 cut(s) | 31, 57, 256 |
| BstMAI | GTCTC | 2 cut(s) | 215, 264 |
| BstMBI | GATC | 3 cut(s) | 28, 54, 253 |
| BstMCI | CGRYCG | 3 cut(s) | 517, 582, 691 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 182 |
| BstSCI | CCNGG | 1 cut(s) | 564 |
| BstSLI | GKGCMC | 1 cut(s) | 88 |
| BstUI | CGCG | 4 cut(s) | 237, 244, 250, 544 |
| BstV1I | GCAGC | 3 cut(s) | 284, 328, 531 |
| BstX2I | RGATCY | 1 cut(s) | 253 |
| BstYI | RGATCY | 1 cut(s) | 253 |
| BstZI | CGGCCG | 1 cut(s) | 688 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 294 |
| BsuRI | GGCC | 4 cut(s) | 207, 506, 677, 690 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 294 |
| BtgI | CCRYGG | 1 cut(s) | 501 |
| BtgZI | GCGATG | 1 cut(s) | 559 |
| BtsCI | GGATG | 1 cut(s) | 635 |
| BtsIMutI | CAGTG | 2 cut(s) | 535, 648 |
| BtuMI | TCGCGA | 1 cut(s) | 237 |
| BveI | ACCTGC | 1 cut(s) | 266 |
| Cac8I | GCNNGC | 4 cut(s) | 88, 339, 440, 644 |
| CfoI | GCGC | 1 cut(s) | 524 |
| Cfr10I | RCCGGY | 2 cut(s) | 434, 581 |
| Cfr13I | GGNCC | 3 cut(s) | 158, 505, 676 |
| ClaI | ATCGAT | 2 cut(s) | 27, 294 |
| CseI | GACGC | 2 cut(s) | 197, 256 |
| Csp6I | GTAC | 1 cut(s) | 654 |
| CviAII | CATG | 2 cut(s) | 467, 502 |
| CviQI | GTAC | 1 cut(s) | 654 |
| DpnI | GATC | 3 cut(s) | 30, 56, 255 |
| DpnII | GATC | 3 cut(s) | 28, 54, 253 |
| EaeI | YGGCCR | 1 cut(s) | 688 |
| EagI | CGGCCG | 1 cut(s) | 688 |
| EciI | GGCGGA | 1 cut(s) | 600 |
| EclXI | CGGCCG | 1 cut(s) | 688 |
| Eco130I | CCWWGG | 1 cut(s) | 501 |
| Eco24I | GRGCYC | 1 cut(s) | 705 |
| Eco47I | GGWCC | 1 cut(s) | 158 |
| Eco52I | CGGCCG | 1 cut(s) | 688 |
| Eco88I | CYCGRG | 1 cut(s) | 704 |
| EcoT14I | CCWWGG | 1 cut(s) | 501 |
| EcoT38I | GRGCYC | 1 cut(s) | 705 |
| ErhI | CCWWGG | 1 cut(s) | 501 |
| FaeI | CATG | 2 cut(s) | 470, 505 |
| FaiI | YATR | 7 cut(s) | 288, 301, 468, 503, 538, 623, 718 |
| FaqI | GGGAC | 2 cut(s) | 171, 200 |
| FatI | CATG | 2 cut(s) | 466, 501 |
| FauI | CCCGC | 2 cut(s) | 95, 549 |
| Fnu4HI | GCNGC | 6 cut(s) | 273, 322, 335, 342, 520, 691 |
| FokI | GGATG | 1 cut(s) | 622 |
| FriOI | GRGCYC | 1 cut(s) | 705 |
| Fsp4HI | GCNGC | 6 cut(s) | 273, 322, 335, 342, 520, 691 |
| FspBI | CTAG | 1 cut(s) | 668 |
| GlaI | GCGC | 1 cut(s) | 523 |
| GluI | GCNGC | 6 cut(s) | 273, 322, 335, 342, 520, 691 |
| GsaI | CCCAGC | 1 cut(s) | 511 |
| HaeII | RGCGCY | 1 cut(s) | 525 |
| HaeIII | GGCC | 4 cut(s) | 207, 506, 677, 690 |
| HapII | CCGG | 4 cut(s) | 150, 435, 565, 582 |
| HgaI | GACGC | 2 cut(s) | 197, 256 |
| HhaI | GCGC | 1 cut(s) | 524 |
| Hin1II | CATG | 2 cut(s) | 470, 505 |
| Hin6I | GCGC | 1 cut(s) | 522 |
| HinP1I | GCGC | 1 cut(s) | 522 |
| HincII | GTYRAC | 1 cut(s) | 487 |
| HindII | GTYRAC | 1 cut(s) | 487 |
| HinfI | GANTC | 4 cut(s) | 72, 132, 390, 588 |
| HpaII | CCGG | 4 cut(s) | 150, 435, 565, 582 |
| HphI | GGTGA | 2 cut(s) | 424, 484 |
| Hpy166II | GTNNAC | 1 cut(s) | 487 |
| Hpy188I | TCNGA | 1 cut(s) | 139 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 236, 358 |
| Hpy8I | GTNNAC | 1 cut(s) | 487 |
| Hpy99I | CGWCG | 3 cut(s) | 191, 676, 701 |
| HpyAV | CCTTC | 1 cut(s) | 137 |
| HpyCH4III | ACNGT | 2 cut(s) | 515, 530 |
| HpyCH4IV | ACGT | 1 cut(s) | 696 |
| HpyCH4V | TGCA | 4 cut(s) | 272, 466, 630, 642 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 182 |
| HpySE526I | ACGT | 1 cut(s) | 696 |
| Hsp92II | CATG | 2 cut(s) | 470, 505 |
| HspAI | GCGC | 1 cut(s) | 522 |
| Kzo9I | GATC | 3 cut(s) | 28, 54, 253 |
| LmnI | GCTCC | 3 cut(s) | 10, 129, 568 |
| Lsp1109I | GCAGC | 3 cut(s) | 284, 328, 531 |
| LweI | GCATC | 1 cut(s) | 163 |
| MaeI | CTAG | 1 cut(s) | 668 |
| MaeII | ACGT | 1 cut(s) | 696 |
| MalI | GATC | 3 cut(s) | 30, 56, 255 |
| MbiI | CCGCTC | 1 cut(s) | 337 |
| MboI | GATC | 3 cut(s) | 28, 54, 253 |
| MboII | GAAGA | 3 cut(s) | 25, 50, 302 |
| MflI | RGATCY | 1 cut(s) | 253 |
| MhlI | GDGCHC | 3 cut(s) | 88, 573, 705 |
| MluCI | AATT | 3 cut(s) | 41, 473, 617 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| MnlI | CCTC | 4 cut(s) | 28, 505, 643, 689 |
| MseI | TTAA | 1 cut(s) | 386 |
| MspCI | CTTAAG | 1 cut(s) | 385 |
| MspI | CCGG | 4 cut(s) | 150, 435, 565, 582 |
| MspR9I | CCNGG | 1 cut(s) | 566 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 274 |
| MvnI | CGCG | 4 cut(s) | 237, 244, 250, 544 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 182 |
| NciI | CCSGG | 1 cut(s) | 566 |
| NcoI | CCATGG | 1 cut(s) | 501 |
| NdeII | GATC | 3 cut(s) | 28, 54, 253 |
| NlaIII | CATG | 2 cut(s) | 470, 505 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 85, 159 |
| NruI | TCGCGA | 1 cut(s) | 237 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 210, 693 |
| PctI | GAATGC | 2 cut(s) | 90, 274 |
| PfeI | GAWTC | 4 cut(s) | 72, 132, 390, 588 |
| PkrI | GCNGC | 6 cut(s) | 274, 323, 336, 343, 521, 692 |
| PspFI | CCCAGC | 1 cut(s) | 507 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 85, 159 |
| PspPI | GGNCC | 3 cut(s) | 158, 505, 676 |
| PsuI | RGATCY | 1 cut(s) | 253 |
| RruI | TCGCGA | 1 cut(s) | 237 |
| RsaI | GTAC | 1 cut(s) | 655 |
| RsaNI | GTAC | 1 cut(s) | 654 |
| SaqAI | TTAA | 1 cut(s) | 386 |
| SatI | GCNGC | 6 cut(s) | 273, 322, 335, 342, 520, 691 |
| Sau3AI | GATC | 3 cut(s) | 28, 54, 253 |
| Sau96I | GGNCC | 3 cut(s) | 158, 505, 676 |
| ScrFI | CCNGG | 1 cut(s) | 566 |
| SduI | GDGCHC | 3 cut(s) | 88, 573, 705 |
| SetI | ASST | 5 cut(s) | 280, 497, 635, 699, 717 |
| SfaNI | GCATC | 1 cut(s) | 163 |
| SinI | GGWCC | 1 cut(s) | 158 |
| SmlI | CTYRAG | 1 cut(s) | 385 |
| SmoI | CTYRAG | 1 cut(s) | 385 |
| Sse9I | AATT | 3 cut(s) | 41, 473, 617 |
| SsiI | CCGC | 9 cut(s) | 88, 244, 314, 321, 335, 366, 542, 585, 691 |
| SspMI | CTAG | 1 cut(s) | 668 |
| StyD4I | CCNGG | 1 cut(s) | 564 |
| StyI | CCWWGG | 1 cut(s) | 501 |
| TaaI | ACNGT | 2 cut(s) | 515, 530 |
| TaiI | ACGT | 1 cut(s) | 699 |
| TaqI | TCGA | 7 cut(s) | 21, 27, 115, 130, 294, 477, 497 |
| TaqII | GACCGA | 1 cut(s) | 383 |
| TasI | AATT | 3 cut(s) | 41, 473, 617 |
| TauI | GCSGC | 3 cut(s) | 324, 337, 693 |
| TfiI | GAWTC | 4 cut(s) | 72, 132, 390, 588 |
| Tru1I | TTAA | 1 cut(s) | 386 |
| Tru9I | TTAA | 1 cut(s) | 386 |
| TscAI | CASTG | 2 cut(s) | 535, 655 |
| TseI | GCWGC | 3 cut(s) | 272, 341, 519 |
| TspDTI | ATGAA | 2 cut(s) | 83, 610 |
| TspRI | CASTG | 2 cut(s) | 535, 655 |
| Vha464I | CTTAAG | 1 cut(s) | 385 |
| VpaK11BI | GGWCC | 1 cut(s) | 158 |
| XapI | RAATTY | 1 cut(s) | 617 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 225 |
| XspI | CTAG | 1 cut(s) | 668 |