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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 435 |
| AccBSI | CCGCTC | 1 cut(s) | 478 |
| AccII | CGCG | 5 cut(s) | 215, 375, 528, 530, 532 |
| AccIII | TCCGGA | 1 cut(s) | 673 |
| AclWI | GGATC | 2 cut(s) | 268, 281 |
| AcoI | YGGCCR | 2 cut(s) | 70, 370 |
| AcsI | RAATTY | 1 cut(s) | 469 |
| AfaI | GTAC | 2 cut(s) | 223, 425 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 50, 143, 518 |
| AgsI | TTSAA | 2 cut(s) | 293, 487 |
| AluBI | AGCT | 2 cut(s) | 594, 601 |
| AluI | AGCT | 2 cut(s) | 594, 601 |
| Alw21I | GWGCWC | 2 cut(s) | 172, 511 |
| Alw26I | GTCTC | 1 cut(s) | 241 |
| AlwI | GGATC | 2 cut(s) | 268, 281 |
| Aor13HI | TCCGGA | 1 cut(s) | 673 |
| AoxI | GGCC | 6 cut(s) | 37, 70, 104, 262, 370, 634 |
| ApoI | RAATTY | 1 cut(s) | 469 |
| AspLEI | GCGC | 5 cut(s) | 124, 217, 530, 532, 534 |
| AspS9I | GGNCC | 2 cut(s) | 105, 263 |
| AsuC2I | CCSGG | 1 cut(s) | 504 |
| AsuHPI | GGTGA | 1 cut(s) | 65 |
| BaeGI | GKGCMC | 1 cut(s) | 207 |
| BalI | TGGCCA | 1 cut(s) | 72 |
| BamHI | GGATCC | 1 cut(s) | 273 |
| BanII | GRGCYC | 1 cut(s) | 60 |
| Bbv12I | GWGCWC | 2 cut(s) | 172, 511 |
| BccI | CCATC | 3 cut(s) | 38, 44, 321 |
| BceAI | ACGGC | 2 cut(s) | 535, 646 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 587, 621 |
| BcnI | CCSGG | 1 cut(s) | 504 |
| BcoDI | GTCTC | 1 cut(s) | 241 |
| BfaI | CTAG | 1 cut(s) | 198 |
| BfoI | RGCGCY | 1 cut(s) | 125 |
| BfuAI | ACCTGC | 1 cut(s) | 435 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 633 |
| BisI | GCNGC | 5 cut(s) | 132, 332, 373, 547, 579 |
| BlsI | GCNGC | 5 cut(s) | 133, 333, 374, 548, 580 |
| Bme1390I | CCNGG | 1 cut(s) | 504 |
| BmgT120I | GGNCC | 2 cut(s) | 105, 263 |
| BmiI | GGNNCC | 2 cut(s) | 135, 275 |
| BmrFI | CCNGG | 1 cut(s) | 504 |
| BmsI | GCATC | 3 cut(s) | 246, 429, 658 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 243, 275 |
| BpuMI | CCSGG | 1 cut(s) | 504 |
| BsaBI | GATNNNNATC | 1 cut(s) | 388 |
| BsaJI | CCNNGG | 4 cut(s) | 101, 142, 502, 582 |
| BsaWI | WCCGGW | 2 cut(s) | 16, 673 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 50, 143, 518 |
| Bse118I | RCCGGY | 2 cut(s) | 35, 180 |
| Bse8I | GATNNNNATC | 1 cut(s) | 388 |
| BseAI | TCCGGA | 1 cut(s) | 673 |
| BseDI | CCNNGG | 4 cut(s) | 101, 142, 502, 582 |
| BseGI | GGATG | 4 cut(s) | 237, 324, 439, 639 |
| BseJI | GATNNNNATC | 1 cut(s) | 388 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 50, 143, 518 |
| BsePI | GCGCGC | 2 cut(s) | 528, 530 |
| BseRI | GAGGAG | 2 cut(s) | 384, 501 |
| BseSI | GKGCMC | 1 cut(s) | 207 |
| BseX3I | CGGCCG | 1 cut(s) | 370 |
| Bsh1236I | CGCG | 5 cut(s) | 215, 375, 528, 530, 532 |
| Bsh1285I | CGRYCG | 3 cut(s) | 117, 181, 373 |
| BshFI | GGCC | 6 cut(s) | 39, 72, 106, 264, 372, 636 |
| BsiEI | CGRYCG | 3 cut(s) | 117, 181, 373 |
| BsiHKAI | GWGCWC | 2 cut(s) | 172, 511 |
| BsiSI | CCGG | 6 cut(s) | 17, 36, 165, 181, 504, 674 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 50, 143, 518 |
| BsmAI | GTCTC | 1 cut(s) | 241 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| BsnI | GGCC | 6 cut(s) | 39, 72, 106, 264, 372, 636 |
| Bsp1286I | GDGCHC | 4 cut(s) | 60, 172, 207, 511 |
| Bsp13I | TCCGGA | 1 cut(s) | 673 |
| Bsp143I | GATC | 3 cut(s) | 273, 346, 552 |
| Bsp19I | CCATGG | 1 cut(s) | 101 |
| BspANI | GGCC | 6 cut(s) | 39, 72, 106, 264, 372, 636 |
| BspEI | TCCGGA | 1 cut(s) | 673 |
| BspFNI | CGCG | 5 cut(s) | 215, 375, 528, 530, 532 |
| BspLI | GGNNCC | 2 cut(s) | 135, 275 |
| BspMI | ACCTGC | 1 cut(s) | 435 |
| BspPI | GGATC | 2 cut(s) | 268, 281 |
| BsrBI | CCGCTC | 1 cut(s) | 478 |
| BsrFI | RCCGGY | 2 cut(s) | 35, 180 |
| BssAI | RCCGGY | 2 cut(s) | 35, 180 |
| BssECI | CCNNGG | 4 cut(s) | 101, 142, 502, 582 |
| BssHII | GCGCGC | 2 cut(s) | 528, 530 |
| BssMI | GATC | 3 cut(s) | 273, 346, 552 |
| BssT1I | CCWWGG | 1 cut(s) | 101 |
| Bst4CI | ACNGT | 2 cut(s) | 146, 449 |
| BstC8I | GCNNGC | 5 cut(s) | 37, 462, 530, 532, 625 |
| BstDEI | CTNAG | 2 cut(s) | 454, 590 |
| BstDSI | CCRYGG | 2 cut(s) | 101, 142 |
| BstF5I | GGATG | 4 cut(s) | 237, 324, 439, 639 |
| BstFNI | CGCG | 5 cut(s) | 215, 375, 528, 530, 532 |
| BstH2I | RGCGCY | 1 cut(s) | 125 |
| BstHHI | GCGC | 5 cut(s) | 124, 217, 530, 532, 534 |
| BstKTI | GATC | 3 cut(s) | 276, 349, 555 |
| BstMAI | GTCTC | 1 cut(s) | 241 |
| BstMBI | GATC | 3 cut(s) | 273, 346, 552 |
| BstMCI | CGRYCG | 3 cut(s) | 117, 181, 373 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 64, 119, 128, 340, 536, 633, 658 |
| BstSCI | CCNGG | 1 cut(s) | 502 |
| BstSLI | GKGCMC | 1 cut(s) | 207 |
| BstUI | CGCG | 5 cut(s) | 215, 375, 528, 530, 532 |
| BstX2I | RGATCY | 1 cut(s) | 273 |
| BstYI | RGATCY | 1 cut(s) | 273 |
| BstZI | CGGCCG | 1 cut(s) | 370 |
| BsuRI | GGCC | 6 cut(s) | 39, 72, 106, 264, 372, 636 |
| BtgI | CCRYGG | 2 cut(s) | 101, 142 |
| BtgZI | GCGATG | 1 cut(s) | 16 |
| BtsCI | GGATG | 4 cut(s) | 237, 324, 439, 639 |
| BveI | ACCTGC | 1 cut(s) | 435 |
| Cac8I | GCNNGC | 5 cut(s) | 37, 462, 530, 532, 625 |
| CfoI | GCGC | 5 cut(s) | 124, 217, 530, 532, 534 |
| Cfr10I | RCCGGY | 2 cut(s) | 35, 180 |
| Cfr13I | GGNCC | 2 cut(s) | 105, 263 |
| Csp6I | GTAC | 2 cut(s) | 222, 424 |
| CviAII | CATG | 2 cut(s) | 68, 102 |
| CviQI | GTAC | 2 cut(s) | 222, 424 |
| DdeI | CTNAG | 2 cut(s) | 454, 590 |
| DpnI | GATC | 3 cut(s) | 275, 348, 554 |
| DpnII | GATC | 3 cut(s) | 273, 346, 552 |
| EaeI | YGGCCR | 2 cut(s) | 70, 370 |
| EagI | CGGCCG | 1 cut(s) | 370 |
| EciI | GGCGGA | 2 cut(s) | 199, 533 |
| EclXI | CGGCCG | 1 cut(s) | 370 |
| Eco130I | CCWWGG | 1 cut(s) | 101 |
| Eco24I | GRGCYC | 1 cut(s) | 60 |
| Eco32I | GATATC | 1 cut(s) | 22 |
| Eco52I | CGGCCG | 1 cut(s) | 370 |
| EcoRV | GATATC | 1 cut(s) | 22 |
| EcoT14I | CCWWGG | 1 cut(s) | 101 |
| EcoT22I | ATGCAT | 1 cut(s) | 239 |
| EcoT38I | GRGCYC | 1 cut(s) | 60 |
| ErhI | CCWWGG | 1 cut(s) | 101 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 2 cut(s) | 71, 105 |
| FaiI | YATR | 9 cut(s) | 69, 103, 128, 235, 298, 418, 445, 606, 666 |
| FatI | CATG | 2 cut(s) | 67, 101 |
| FauI | CCCGC | 4 cut(s) | 336, 453, 483, 666 |
| Fnu4HI | GCNGC | 5 cut(s) | 132, 332, 373, 547, 579 |
| FokI | GGATG | 4 cut(s) | 224, 311, 446, 626 |
| FriOI | GRGCYC | 1 cut(s) | 60 |
| Fsp4HI | GCNGC | 5 cut(s) | 132, 332, 373, 547, 579 |
| FspBI | CTAG | 1 cut(s) | 198 |
| GlaI | GCGC | 5 cut(s) | 123, 216, 529, 531, 533 |
| GluI | GCNGC | 5 cut(s) | 132, 332, 373, 547, 579 |
| HaeII | RGCGCY | 1 cut(s) | 125 |
| HaeIII | GGCC | 6 cut(s) | 39, 72, 106, 264, 372, 636 |
| HapII | CCGG | 6 cut(s) | 17, 36, 165, 181, 504, 674 |
| HhaI | GCGC | 5 cut(s) | 124, 217, 530, 532, 534 |
| Hin1II | CATG | 2 cut(s) | 71, 105 |
| Hin6I | GCGC | 5 cut(s) | 122, 215, 528, 530, 532 |
| HinP1I | GCGC | 5 cut(s) | 122, 215, 528, 530, 532 |
| HinfI | GANTC | 3 cut(s) | 80, 289, 494 |
| HpaII | CCGG | 6 cut(s) | 17, 36, 165, 181, 504, 674 |
| HphI | GGTGA | 1 cut(s) | 65 |
| Hpy188I | TCNGA | 1 cut(s) | 406 |
| Hpy188III | TCNNGA | 5 cut(s) | 198, 246, 286, 317, 674 |
| HpyAV | CCTTC | 1 cut(s) | 165 |
| HpyCH4III | ACNGT | 2 cut(s) | 146, 449 |
| HpyCH4V | TGCA | 2 cut(s) | 67, 237 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 64, 119, 128, 340, 536, 633, 658 |
| HpyF3I | CTNAG | 2 cut(s) | 454, 590 |
| Hsp92II | CATG | 2 cut(s) | 71, 105 |
| HspAI | GCGC | 5 cut(s) | 122, 215, 528, 530, 532 |
| Kpn2I | TCCGGA | 1 cut(s) | 673 |
| KroI | GCCGGC | 1 cut(s) | 35 |
| KroNI | GCCGGC | 1 cut(s) | 37 |
| Kzo9I | GATC | 3 cut(s) | 273, 346, 552 |
| LmnI | GCTCC | 6 cut(s) | 139, 167, 483, 514, 613, 676 |
| LweI | GCATC | 3 cut(s) | 246, 429, 658 |
| MaeI | CTAG | 1 cut(s) | 198 |
| MaeIII | GTNAC | 2 cut(s) | 84, 449 |
| MalI | GATC | 3 cut(s) | 275, 348, 554 |
| MauBI | CGCGCGCG | 1 cut(s) | 528 |
| MbiI | CCGCTC | 1 cut(s) | 478 |
| MboI | GATC | 3 cut(s) | 273, 346, 552 |
| MflI | RGATCY | 1 cut(s) | 273 |
| MhlI | GDGCHC | 4 cut(s) | 60, 172, 207, 511 |
| MlsI | TGGCCA | 1 cut(s) | 72 |
| MluCI | AATT | 6 cut(s) | 74, 187, 469, 573, 629, 644 |
| MluNI | TGGCCA | 1 cut(s) | 72 |
| MlyI | GAGTC | 1 cut(s) | 74 |
| MnlI | CCTC | 8 cut(s) | 217, 287, 370, 405, 522, 577, 647, 698 |
| Mox20I | TGGCCA | 1 cut(s) | 72 |
| Mph1103I | ATGCAT | 1 cut(s) | 239 |
| MroI | TCCGGA | 1 cut(s) | 673 |
| MroNI | GCCGGC | 1 cut(s) | 35 |
| MscI | TGGCCA | 1 cut(s) | 72 |
| MslI | CAYNNNNRTG | 1 cut(s) | 318 |
| Msp20I | TGGCCA | 1 cut(s) | 72 |
| MspI | CCGG | 6 cut(s) | 17, 36, 165, 181, 504, 674 |
| MspR9I | CCNGG | 1 cut(s) | 504 |
| MvnI | CGCG | 5 cut(s) | 215, 375, 528, 530, 532 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 64, 119, 128, 340, 536, 633, 658 |
| NaeI | GCCGGC | 1 cut(s) | 37 |
| NciI | CCSGG | 1 cut(s) | 504 |
| NcoI | CCATGG | 1 cut(s) | 101 |
| NdeII | GATC | 3 cut(s) | 273, 346, 552 |
| NgoMIV | GCCGGC | 1 cut(s) | 35 |
| NlaIII | CATG | 2 cut(s) | 71, 105 |
| NlaIV | GGNNCC | 2 cut(s) | 135, 275 |
| NmeAIII | GCCGAG | 4 cut(s) | 240, 348, 607, 671 |
| NmuCI | GTSAC | 1 cut(s) | 449 |
| NsiI | ATGCAT | 1 cut(s) | 239 |
| PauI | GCGCGC | 2 cut(s) | 528, 530 |
| PdiI | GCCGGC | 1 cut(s) | 37 |
| PfeI | GAWTC | 2 cut(s) | 289, 494 |
| PkrI | GCNGC | 5 cut(s) | 133, 333, 374, 548, 580 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| PspN4I | GGNNCC | 2 cut(s) | 135, 275 |
| PspPI | GGNCC | 2 cut(s) | 105, 263 |
| PsuI | RGATCY | 1 cut(s) | 273 |
| PteI | GCGCGC | 2 cut(s) | 528, 530 |
| RsaI | GTAC | 2 cut(s) | 223, 425 |
| RsaNI | GTAC | 2 cut(s) | 222, 424 |
| RseI | CAYNNNNRTG | 1 cut(s) | 318 |
| SatI | GCNGC | 5 cut(s) | 132, 332, 373, 547, 579 |
| Sau3AI | GATC | 3 cut(s) | 273, 346, 552 |
| Sau96I | GGNCC | 2 cut(s) | 105, 263 |
| SchI | GAGTC | 1 cut(s) | 74 |
| ScrFI | CCNGG | 1 cut(s) | 504 |
| SduI | GDGCHC | 4 cut(s) | 60, 172, 207, 511 |
| SetI | ASST | 4 cut(s) | 429, 596, 603, 690 |
| SfaNI | GCATC | 3 cut(s) | 246, 429, 658 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 318 |
| Sse9I | AATT | 6 cut(s) | 74, 187, 469, 573, 629, 644 |
| SspMI | CTAG | 1 cut(s) | 198 |
| StyD4I | CCNGG | 1 cut(s) | 502 |
| StyI | CCWWGG | 1 cut(s) | 101 |
| TaaI | ACNGT | 2 cut(s) | 146, 449 |
| TaqI | TCGA | 3 cut(s) | 245, 279, 564 |
| TasI | AATT | 6 cut(s) | 74, 187, 469, 573, 629, 644 |
| TauI | GCSGC | 5 cut(s) | 134, 334, 375, 549, 581 |
| TfiI | GAWTC | 2 cut(s) | 289, 494 |
| TseFI | GTSAC | 1 cut(s) | 449 |
| Tsp45I | GTSAC | 1 cut(s) | 449 |
| TspDTI | ATGAA | 1 cut(s) | 378 |
| TspGWI | ACGGA | 1 cut(s) | 506 |
| XapI | RAATTY | 1 cut(s) | 469 |
| XbaI | TCTAGA | 1 cut(s) | 197 |
| XspI | CTAG | 1 cut(s) | 198 |
| Zsp2I | ATGCAT | 1 cut(s) | 239 |