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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 528 |
| AccB1I | GGYRCC | 1 cut(s) | 528 |
| AccI | GTMKAC | 3 cut(s) | 359, 380, 547 |
| AccII | CGCG | 6 cut(s) | 152, 263, 274, 318, 376, 445 |
| AccIII | TCCGGA | 1 cut(s) | 453 |
| AciI | CCGC | 7 cut(s) | 234, 261, 274, 316, 340, 374, 376 |
| AcsI | RAATTY | 1 cut(s) | 285 |
| AcuI | CTGAAG | 1 cut(s) | 290 |
| AcvI | CACGTG | 1 cut(s) | 86 |
| AfaI | GTAC | 3 cut(s) | 226, 399, 530 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 354, 393 |
| AflIII | ACRYGT | 1 cut(s) | 150 |
| AgsI | TTSAA | 2 cut(s) | 159, 221 |
| AjnI | CCWGG | 2 cut(s) | 392, 418 |
| AluBI | AGCT | 2 cut(s) | 113, 129 |
| AluI | AGCT | 2 cut(s) | 113, 129 |
| Alw26I | GTCTC | 1 cut(s) | 69 |
| Aor13HI | TCCGGA | 1 cut(s) | 453 |
| AoxI | GGCC | 3 cut(s) | 3, 345, 390 |
| ApeKI | GCWGC | 4 cut(s) | 37, 47, 113, 116 |
| ApoI | RAATTY | 1 cut(s) | 285 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 93 |
| Asp718I | GGTACC | 1 cut(s) | 528 |
| AspLEI | GCGC | 2 cut(s) | 265, 447 |
| AspS9I | GGNCC | 3 cut(s) | 4, 390, 456 |
| AsuC2I | CCSGG | 2 cut(s) | 388, 472 |
| AsuII | TTCGAA | 1 cut(s) | 54 |
| AsuNHI | GCTAGC | 1 cut(s) | 125 |
| AvaII | GGWCC | 1 cut(s) | 456 |
| BanI | GGYRCC | 1 cut(s) | 528 |
| BbrPI | CACGTG | 1 cut(s) | 86 |
| BbvI | GCAGC | 4 cut(s) | 49, 59, 100, 103 |
| BccI | CCATC | 1 cut(s) | 206 |
| BciT130I | CCWGG | 2 cut(s) | 394, 420 |
| BcnI | CCSGG | 2 cut(s) | 388, 472 |
| BcoDI | GTCTC | 1 cut(s) | 69 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BisI | GCNGC | 6 cut(s) | 38, 48, 114, 117, 261, 275 |
| BlsI | GCNGC | 6 cut(s) | 39, 49, 115, 118, 262, 276 |
| Bme1390I | CCNGG | 4 cut(s) | 388, 394, 420, 472 |
| Bme18I | GGWCC | 1 cut(s) | 456 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 390, 456 |
| BmiI | GGNNCC | 4 cut(s) | 24, 391, 458, 530 |
| BmrFI | CCNGG | 4 cut(s) | 388, 394, 420, 472 |
| BmtI | GCTAGC | 1 cut(s) | 129 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 286, 318, 431, 463 |
| Bpu10I | CCTNAGC | 1 cut(s) | 43 |
| Bpu14I | TTCGAA | 1 cut(s) | 54 |
| BpuEI | CTTGAG | 3 cut(s) | 32, 63, 469 |
| BpuMI | CCSGG | 2 cut(s) | 388, 472 |
| BsaAI | YACGTR | 1 cut(s) | 86 |
| BsaJI | CCNNGG | 4 cut(s) | 374, 387, 393, 418 |
| BsaWI | WCCGGW | 2 cut(s) | 453, 525 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 448, 478 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 354, 393 |
| BseAI | TCCGGA | 1 cut(s) | 453 |
| BseBI | CCWGG | 2 cut(s) | 394, 420 |
| BseDI | CCNNGG | 4 cut(s) | 374, 387, 393, 418 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 354, 393 |
| BseMII | CTCAG | 4 cut(s) | 41, 80, 165, 281 |
| BseRI | GAGGAG | 2 cut(s) | 307, 335 |
| BseXI | GCAGC | 4 cut(s) | 49, 59, 100, 103 |
| Bsh1236I | CGCG | 6 cut(s) | 152, 263, 274, 318, 376, 445 |
| BshFI | GGCC | 3 cut(s) | 5, 347, 392 |
| BshNI | GGYRCC | 1 cut(s) | 528 |
| BsiSI | CCGG | 4 cut(s) | 387, 454, 472, 526 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 354, 393 |
| BsmAI | GTCTC | 1 cut(s) | 69 |
| BsnI | GGCC | 3 cut(s) | 5, 347, 392 |
| Bsp119I | TTCGAA | 1 cut(s) | 54 |
| Bsp13I | TCCGGA | 1 cut(s) | 453 |
| Bsp143I | GATC | 1 cut(s) | 533 |
| BspACI | CCGC | 7 cut(s) | 234, 261, 274, 316, 340, 374, 376 |
| BspANI | GGCC | 3 cut(s) | 5, 347, 392 |
| BspCNI | CTCAG | 4 cut(s) | 40, 79, 166, 282 |
| BspEI | TCCGGA | 1 cut(s) | 453 |
| BspFNI | CGCG | 6 cut(s) | 152, 263, 274, 318, 376, 445 |
| BspLI | GGNNCC | 4 cut(s) | 24, 391, 458, 530 |
| BspOI | GCTAGC | 1 cut(s) | 129 |
| BspT104I | TTCGAA | 1 cut(s) | 54 |
| BspT107I | GGYRCC | 1 cut(s) | 528 |
| BssECI | CCNNGG | 4 cut(s) | 374, 387, 393, 418 |
| BssMI | GATC | 1 cut(s) | 533 |
| Bst2UI | CCWGG | 2 cut(s) | 394, 420 |
| Bst4CI | ACNGT | 1 cut(s) | 364 |
| Bst6I | CTCTTC | 2 cut(s) | 309, 524 |
| BstBAI | YACGTR | 1 cut(s) | 86 |
| BstBI | TTCGAA | 1 cut(s) | 54 |
| BstC8I | GCNNGC | 4 cut(s) | 111, 127, 316, 449 |
| BstDEI | CTNAG | 6 cut(s) | 27, 43, 66, 174, 290, 551 |
| BstDSI | CCRYGG | 1 cut(s) | 374 |
| BstFNI | CGCG | 6 cut(s) | 152, 263, 274, 318, 376, 445 |
| BstHHI | GCGC | 2 cut(s) | 265, 447 |
| BstKTI | GATC | 1 cut(s) | 536 |
| BstMAI | GTCTC | 1 cut(s) | 69 |
| BstMBI | GATC | 1 cut(s) | 533 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 56, 89, 110, 122, 135, 149, 271 |
| BstNI | CCWGG | 2 cut(s) | 394, 420 |
| BstNSI | RCATGY | 1 cut(s) | 260 |
| BstSCI | CCNGG | 4 cut(s) | 386, 392, 418, 470 |
| BstUI | CGCG | 6 cut(s) | 152, 263, 274, 318, 376, 445 |
| BstV1I | GCAGC | 4 cut(s) | 49, 59, 100, 103 |
| BsuRI | GGCC | 3 cut(s) | 5, 347, 392 |
| BtgI | CCRYGG | 1 cut(s) | 374 |
| BtgZI | GCGATG | 1 cut(s) | 74 |
| BtsI | GCAGTG | 1 cut(s) | 133 |
| BtsIMutI | CAGTG | 1 cut(s) | 133 |
| Cac8I | GCNNGC | 4 cut(s) | 111, 127, 316, 449 |
| CfoI | GCGC | 2 cut(s) | 265, 447 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 390, 456 |
| Cfr42I | CCGCGG | 1 cut(s) | 377 |
| CseI | GACGC | 1 cut(s) | 131 |
| Csp6I | GTAC | 3 cut(s) | 225, 398, 529 |
| CviAII | CATG | 2 cut(s) | 257, 326 |
| CviQI | GTAC | 3 cut(s) | 225, 398, 529 |
| DdeI | CTNAG | 6 cut(s) | 27, 43, 66, 174, 290, 551 |
| DpnI | GATC | 1 cut(s) | 535 |
| DpnII | GATC | 1 cut(s) | 533 |
| Eam1104I | CTCTTC | 2 cut(s) | 309, 524 |
| EarI | CTCTTC | 2 cut(s) | 309, 524 |
| EciI | GGCGGA | 1 cut(s) | 355 |
| Eco47I | GGWCC | 1 cut(s) | 456 |
| Eco57I | CTGAAG | 1 cut(s) | 290 |
| Eco72I | CACGTG | 1 cut(s) | 86 |
| EcoO109I | RGGNCCY | 1 cut(s) | 390 |
| EcoRII | CCWGG | 2 cut(s) | 392, 418 |
| FaeI | CATG | 2 cut(s) | 260, 329 |
| FaiI | YATR | 3 cut(s) | 258, 327, 498 |
| FatI | CATG | 2 cut(s) | 256, 325 |
| FauI | CCCGC | 1 cut(s) | 323 |
| FblI | GTMKAC | 3 cut(s) | 359, 380, 547 |
| Fnu4HI | GCNGC | 6 cut(s) | 38, 48, 114, 117, 261, 275 |
| Fsp4HI | GCNGC | 6 cut(s) | 38, 48, 114, 117, 261, 275 |
| FspBI | CTAG | 1 cut(s) | 126 |
| GlaI | GCGC | 2 cut(s) | 264, 446 |
| GluI | GCNGC | 6 cut(s) | 38, 48, 114, 117, 261, 275 |
| HaeIII | GGCC | 3 cut(s) | 5, 347, 392 |
| HapII | CCGG | 4 cut(s) | 387, 454, 472, 526 |
| HgaI | GACGC | 1 cut(s) | 131 |
| HhaI | GCGC | 2 cut(s) | 265, 447 |
| Hin1II | CATG | 2 cut(s) | 260, 329 |
| Hin6I | GCGC | 2 cut(s) | 263, 445 |
| HinP1I | GCGC | 2 cut(s) | 263, 445 |
| HincII | GTYRAC | 2 cut(s) | 360, 548 |
| HindII | GTYRAC | 2 cut(s) | 360, 548 |
| HinfI | GANTC | 4 cut(s) | 200, 295, 440, 549 |
| HpaII | CCGG | 4 cut(s) | 387, 454, 472, 526 |
| Hpy166II | GTNNAC | 4 cut(s) | 299, 360, 381, 548 |
| Hpy188I | TCNGA | 6 cut(s) | 30, 69, 175, 291, 309, 554 |
| Hpy188III | TCNNGA | 1 cut(s) | 454 |
| Hpy8I | GTNNAC | 4 cut(s) | 299, 360, 381, 548 |
| Hpy99I | CGWCG | 1 cut(s) | 125 |
| HpyAV | CCTTC | 6 cut(s) | 61, 329, 337, 484, 494, 522 |
| HpyCH4III | ACNGT | 1 cut(s) | 364 |
| HpyCH4IV | ACGT | 1 cut(s) | 85 |
| HpyCH4V | TGCA | 2 cut(s) | 195, 250 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 56, 89, 110, 122, 135, 149, 271 |
| HpyF3I | CTNAG | 6 cut(s) | 27, 43, 66, 174, 290, 551 |
| HpySE526I | ACGT | 1 cut(s) | 85 |
| Hsp92II | CATG | 2 cut(s) | 260, 329 |
| HspAI | GCGC | 2 cut(s) | 263, 445 |
| Kpn2I | TCCGGA | 1 cut(s) | 453 |
| KpnI | GGTACC | 1 cut(s) | 532 |
| KspI | CCGCGG | 1 cut(s) | 377 |
| Kzo9I | GATC | 1 cut(s) | 533 |
| LmnI | GCTCC | 4 cut(s) | 148, 270, 322, 456 |
| Lsp1109I | GCAGC | 4 cut(s) | 49, 59, 100, 103 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MaeII | ACGT | 1 cut(s) | 85 |
| MalI | GATC | 1 cut(s) | 535 |
| MboI | GATC | 1 cut(s) | 533 |
| MboII | GAAGA | 6 cut(s) | 156, 296, 344, 359, 362, 511 |
| MluCI | AATT | 1 cut(s) | 285 |
| MluI | ACGCGT | 1 cut(s) | 150 |
| MlyI | GAGTC | 3 cut(s) | 304, 449, 543 |
| MroI | TCCGGA | 1 cut(s) | 453 |
| MroXI | GAANNNNTTC | 1 cut(s) | 93 |
| MseI | TTAA | 1 cut(s) | 189 |
| MspA1I | CMGCKG | 1 cut(s) | 376 |
| MspI | CCGG | 4 cut(s) | 387, 454, 472, 526 |
| MspR9I | CCNGG | 4 cut(s) | 388, 394, 420, 472 |
| MvaI | CCWGG | 2 cut(s) | 394, 420 |
| MvnI | CGCG | 6 cut(s) | 152, 263, 274, 318, 376, 445 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 56, 89, 110, 122, 135, 149, 271 |
| NciI | CCSGG | 2 cut(s) | 388, 472 |
| NdeII | GATC | 1 cut(s) | 533 |
| NheI | GCTAGC | 1 cut(s) | 125 |
| NlaIII | CATG | 2 cut(s) | 260, 329 |
| NlaIV | GGNNCC | 4 cut(s) | 24, 391, 458, 530 |
| NspI | RCATGY | 1 cut(s) | 260 |
| NspV | TTCGAA | 1 cut(s) | 54 |
| PdmI | GAANNNNTTC | 1 cut(s) | 93 |
| PfeI | GAWTC | 1 cut(s) | 200 |
| PkrI | GCNGC | 6 cut(s) | 39, 49, 115, 118, 262, 276 |
| PleI | GAGTC | 3 cut(s) | 303, 448, 543 |
| PmaCI | CACGTG | 1 cut(s) | 86 |
| PmlI | CACGTG | 1 cut(s) | 86 |
| PpsI | GAGTC | 3 cut(s) | 303, 448, 543 |
| Ppu21I | YACGTR | 1 cut(s) | 86 |
| Psp6I | CCWGG | 2 cut(s) | 392, 418 |
| PspCI | CACGTG | 1 cut(s) | 86 |
| PspGI | CCWGG | 2 cut(s) | 392, 418 |
| PspN4I | GGNNCC | 4 cut(s) | 24, 391, 458, 530 |
| PspPI | GGNCC | 3 cut(s) | 4, 390, 456 |
| RsaI | GTAC | 3 cut(s) | 226, 399, 530 |
| RsaNI | GTAC | 3 cut(s) | 225, 398, 529 |
| SacII | CCGCGG | 1 cut(s) | 377 |
| SalI | GTCGAC | 2 cut(s) | 358, 546 |
| SaqAI | TTAA | 1 cut(s) | 189 |
| SatI | GCNGC | 6 cut(s) | 38, 48, 114, 117, 261, 275 |
| Sau3AI | GATC | 1 cut(s) | 533 |
| Sau96I | GGNCC | 3 cut(s) | 4, 390, 456 |
| SchI | GAGTC | 3 cut(s) | 304, 449, 543 |
| ScrFI | CCNGG | 4 cut(s) | 388, 394, 420, 472 |
| SetI | ASST | 8 cut(s) | 28, 88, 115, 131, 304, 359, 386, 427 |
| Sfr303I | CCGCGG | 1 cut(s) | 377 |
| SfuI | TTCGAA | 1 cut(s) | 54 |
| SgrBI | CCGCGG | 1 cut(s) | 377 |
| SinI | GGWCC | 1 cut(s) | 456 |
| SmlI | CTYRAG | 3 cut(s) | 11, 78, 484 |
| SmoI | CTYRAG | 3 cut(s) | 11, 78, 484 |
| Sse9I | AATT | 1 cut(s) | 285 |
| SsiI | CCGC | 7 cut(s) | 234, 261, 274, 316, 340, 374, 376 |
| SspMI | CTAG | 1 cut(s) | 126 |
| StyD4I | CCNGG | 4 cut(s) | 386, 392, 418, 470 |
| TaaI | ACNGT | 1 cut(s) | 364 |
| TaiI | ACGT | 1 cut(s) | 88 |
| TaqI | TCGA | 4 cut(s) | 54, 97, 359, 547 |
| TasI | AATT | 1 cut(s) | 285 |
| TauI | GCSGC | 2 cut(s) | 263, 277 |
| TfiI | GAWTC | 1 cut(s) | 200 |
| Tru1I | TTAA | 1 cut(s) | 189 |
| Tru9I | TTAA | 1 cut(s) | 189 |
| TscAI | CASTG | 1 cut(s) | 140 |
| TseI | GCWGC | 4 cut(s) | 37, 47, 113, 116 |
| TspDTI | ATGAA | 1 cut(s) | 513 |
| TspRI | CASTG | 1 cut(s) | 140 |
| VpaK11BI | GGWCC | 1 cut(s) | 456 |
| XapI | RAATTY | 1 cut(s) | 285 |
| XceI | RCATGY | 1 cut(s) | 260 |
| XmiI | GTMKAC | 3 cut(s) | 359, 380, 547 |
| XmnI | GAANNNNTTC | 1 cut(s) | 93 |
| XspI | CTAG | 1 cut(s) | 126 |