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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| AccB1I | GGYRCC | 1 cut(s) | 71 |
| AccII | CGCG | 3 cut(s) | 342, 355, 423 |
| AciI | CCGC | 4 cut(s) | 167, 261, 423, 471 |
| AcoI | YGGCCR | 1 cut(s) | 302 |
| AcuI | CTGAAG | 1 cut(s) | 475 |
| AcyI | GRCGYC | 1 cut(s) | 189 |
| AfaI | GTAC | 2 cut(s) | 203, 348 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 294, 425, 554 |
| AgsI | TTSAA | 1 cut(s) | 46 |
| AjnI | CCWGG | 1 cut(s) | 65 |
| Alw21I | GWGCWC | 1 cut(s) | 322 |
| Alw26I | GTCTC | 2 cut(s) | 95, 246 |
| Alw44I | GTGCAC | 1 cut(s) | 318 |
| AoxI | GGCC | 3 cut(s) | 157, 302, 541 |
| ApaLI | GTGCAC | 1 cut(s) | 318 |
| ApeKI | GCWGC | 3 cut(s) | 56, 377, 446 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 479, 511 |
| AspLEI | GCGC | 2 cut(s) | 86, 355 |
| AspS9I | GGNCC | 2 cut(s) | 63, 158 |
| AsuC2I | CCSGG | 2 cut(s) | 151, 249 |
| AsuHPI | GGTGA | 3 cut(s) | 104, 134, 379 |
| AvaII | GGWCC | 1 cut(s) | 63 |
| BaeGI | GKGCMC | 2 cut(s) | 74, 322 |
| BalI | TGGCCA | 1 cut(s) | 304 |
| BanI | GGYRCC | 1 cut(s) | 71 |
| BbsI | GAAGAC | 1 cut(s) | 200 |
| Bbv12I | GWGCWC | 1 cut(s) | 322 |
| BbvI | GCAGC | 3 cut(s) | 43, 364, 433 |
| BccI | CCATC | 7 cut(s) | 200, 288, 313, 420, 542, 548, 557 |
| BceAI | ACGGC | 1 cut(s) | 69 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 38, 61, 72, 95 |
| BciT130I | CCWGG | 1 cut(s) | 67 |
| BcnI | CCSGG | 2 cut(s) | 151, 249 |
| BcoDI | GTCTC | 2 cut(s) | 95, 246 |
| BfaI | CTAG | 4 cut(s) | 98, 230, 362, 559 |
| BfmI | CTRYAG | 1 cut(s) | 378 |
| BfoI | RGCGCY | 1 cut(s) | 87 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| BglII | AGATCT | 1 cut(s) | 358 |
| BisI | GCNGC | 3 cut(s) | 57, 378, 447 |
| BlsI | GCNGC | 3 cut(s) | 58, 379, 448 |
| Bme1390I | CCNGG | 3 cut(s) | 67, 151, 249 |
| Bme18I | GGWCC | 1 cut(s) | 63 |
| BmgT120I | GGNCC | 2 cut(s) | 63, 158 |
| BmiI | GGNNCC | 2 cut(s) | 6, 73 |
| BmrFI | CCNGG | 3 cut(s) | 67, 151, 249 |
| BpiI | GAAGAC | 1 cut(s) | 200 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 499, 531 |
| BpuMI | CCSGG | 2 cut(s) | 151, 249 |
| Bsa29I | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BsaHI | GRCGYC | 1 cut(s) | 189 |
| BsaI | GGTCTC | 1 cut(s) | 95 |
| BsaJI | CCNNGG | 1 cut(s) | 66 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 294, 425, 554 |
| Bse1I | ACTGG | 2 cut(s) | 75, 544 |
| BseBI | CCWGG | 1 cut(s) | 67 |
| BseCI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BseDI | CCNNGG | 1 cut(s) | 66 |
| BseGI | GGATG | 2 cut(s) | 305, 525 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 294, 425, 554 |
| BseNI | ACTGG | 2 cut(s) | 75, 544 |
| BseSI | GKGCMC | 2 cut(s) | 74, 322 |
| BseXI | GCAGC | 3 cut(s) | 43, 364, 433 |
| Bsh1236I | CGCG | 3 cut(s) | 342, 355, 423 |
| BshFI | GGCC | 3 cut(s) | 159, 304, 543 |
| BshNI | GGYRCC | 1 cut(s) | 71 |
| BshVI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BsiHKAI | GWGCWC | 1 cut(s) | 322 |
| BsiSI | CCGG | 2 cut(s) | 150, 249 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 294, 425, 554 |
| BsmAI | GTCTC | 2 cut(s) | 95, 246 |
| BsmI | GAATGC | 2 cut(s) | 90, 379 |
| BsnI | GGCC | 3 cut(s) | 159, 304, 543 |
| Bso31I | GGTCTC | 1 cut(s) | 95 |
| Bsp1286I | GDGCHC | 2 cut(s) | 74, 322 |
| Bsp143I | GATC | 4 cut(s) | 28, 139, 358, 400 |
| Bsp68I | TCGCGA | 1 cut(s) | 342 |
| BspACI | CCGC | 4 cut(s) | 167, 261, 423, 471 |
| BspANI | GGCC | 3 cut(s) | 159, 304, 543 |
| BspDI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BspFNI | CGCG | 3 cut(s) | 342, 355, 423 |
| BspLI | GGNNCC | 2 cut(s) | 6, 73 |
| BspMAI | CTGCAG | 1 cut(s) | 382 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BspT107I | GGYRCC | 1 cut(s) | 71 |
| BspTNI | GGTCTC | 1 cut(s) | 95 |
| BsrI | ACTGG | 2 cut(s) | 75, 544 |
| BssECI | CCNNGG | 1 cut(s) | 66 |
| BssMI | GATC | 4 cut(s) | 28, 139, 358, 400 |
| BssNI | GRCGYC | 1 cut(s) | 189 |
| Bst2UI | CCWGG | 1 cut(s) | 67 |
| Bst4CI | ACNGT | 1 cut(s) | 206 |
| BstACI | GRCGYC | 1 cut(s) | 189 |
| BstC8I | GCNNGC | 2 cut(s) | 88, 437 |
| BstDEI | CTNAG | 1 cut(s) | 12 |
| BstF5I | GGATG | 2 cut(s) | 305, 525 |
| BstFNI | CGCG | 3 cut(s) | 342, 355, 423 |
| BstH2I | RGCGCY | 1 cut(s) | 87 |
| BstHHI | GCGC | 2 cut(s) | 86, 355 |
| BstKTI | GATC | 4 cut(s) | 31, 142, 361, 403 |
| BstMAI | GTCTC | 2 cut(s) | 95, 246 |
| BstMBI | GATC | 4 cut(s) | 28, 139, 358, 400 |
| BstNI | CCWGG | 1 cut(s) | 67 |
| BstSCI | CCNGG | 3 cut(s) | 65, 149, 247 |
| BstSFI | CTRYAG | 1 cut(s) | 378 |
| BstSLI | GKGCMC | 2 cut(s) | 74, 322 |
| BstUI | CGCG | 3 cut(s) | 342, 355, 423 |
| BstV1I | GCAGC | 3 cut(s) | 43, 364, 433 |
| BstV2I | GAAGAC | 1 cut(s) | 200 |
| BstX2I | RGATCY | 1 cut(s) | 358 |
| BstYI | RGATCY | 1 cut(s) | 358 |
| Bsu15I | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BsuRI | GGCC | 3 cut(s) | 159, 304, 543 |
| BsuTUI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BtgZI | GCGATG | 1 cut(s) | 178 |
| BtsCI | GGATG | 2 cut(s) | 305, 525 |
| BtsIMutI | CAGTG | 1 cut(s) | 537 |
| BtuMI | TCGCGA | 1 cut(s) | 342 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| Cac8I | GCNNGC | 2 cut(s) | 88, 437 |
| CfoI | GCGC | 2 cut(s) | 86, 355 |
| Cfr13I | GGNCC | 2 cut(s) | 63, 158 |
| ClaI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 2 cut(s) | 202, 347 |
| CviAII | CATG | 1 cut(s) | 199 |
| CviJI | RGCY | 7 cut(s) | 5, 56, 159, 287, 304, 543, 558 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 56, 159, 287, 304, 543, 558 |
| CviQI | GTAC | 2 cut(s) | 202, 347 |
| DdeI | CTNAG | 1 cut(s) | 12 |
| DpnI | GATC | 4 cut(s) | 30, 141, 360, 402 |
| DpnII | GATC | 4 cut(s) | 28, 139, 358, 400 |
| EaeI | YGGCCR | 1 cut(s) | 302 |
| Eco31I | GGTCTC | 1 cut(s) | 95 |
| Eco47I | GGWCC | 1 cut(s) | 63 |
| Eco57I | CTGAAG | 1 cut(s) | 475 |
| EcoRII | CCWGG | 1 cut(s) | 65 |
| FaeI | CATG | 1 cut(s) | 202 |
| FaiI | YATR | 1 cut(s) | 200 |
| FatI | CATG | 1 cut(s) | 198 |
| Fnu4HI | GCNGC | 3 cut(s) | 57, 378, 447 |
| FokI | GGATG | 2 cut(s) | 292, 512 |
| Fsp4HI | GCNGC | 3 cut(s) | 57, 378, 447 |
| FspBI | CTAG | 4 cut(s) | 98, 230, 362, 559 |
| GlaI | GCGC | 2 cut(s) | 85, 354 |
| GluI | GCNGC | 3 cut(s) | 57, 378, 447 |
| HaeII | RGCGCY | 1 cut(s) | 87 |
| HaeIII | GGCC | 3 cut(s) | 159, 304, 543 |
| HapII | CCGG | 2 cut(s) | 150, 249 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 2 cut(s) | 86, 355 |
| Hin1I | GRCGYC | 1 cut(s) | 189 |
| Hin1II | CATG | 1 cut(s) | 202 |
| Hin6I | GCGC | 2 cut(s) | 84, 353 |
| HinP1I | GCGC | 2 cut(s) | 84, 353 |
| HinfI | GANTC | 1 cut(s) | 244 |
| HpaII | CCGG | 2 cut(s) | 150, 249 |
| HphI | GGTGA | 3 cut(s) | 104, 134, 379 |
| Hpy166II | GTNNAC | 1 cut(s) | 320 |
| Hpy188I | TCNGA | 5 cut(s) | 63, 139, 218, 239, 494 |
| Hpy188III | TCNNGA | 4 cut(s) | 32, 98, 341, 463 |
| Hpy8I | GTNNAC | 1 cut(s) | 320 |
| Hpy99I | CGWCG | 1 cut(s) | 222 |
| HpyAV | CCTTC | 3 cut(s) | 137, 234, 554 |
| HpyCH4III | ACNGT | 1 cut(s) | 206 |
| HpyCH4V | TGCA | 2 cut(s) | 320, 380 |
| HpyF3I | CTNAG | 1 cut(s) | 12 |
| Hsp92I | GRCGYC | 1 cut(s) | 189 |
| Hsp92II | CATG | 1 cut(s) | 202 |
| HspAI | GCGC | 2 cut(s) | 84, 353 |
| Kzo9I | GATC | 4 cut(s) | 28, 139, 358, 400 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| Lsp1109I | GCAGC | 3 cut(s) | 43, 364, 433 |
| MaeI | CTAG | 4 cut(s) | 98, 230, 362, 559 |
| MalI | GATC | 4 cut(s) | 30, 141, 360, 402 |
| MboI | GATC | 4 cut(s) | 28, 139, 358, 400 |
| MboII | GAAGA | 4 cut(s) | 47, 50, 200, 407 |
| MflI | RGATCY | 1 cut(s) | 358 |
| MhlI | GDGCHC | 2 cut(s) | 74, 322 |
| MlsI | TGGCCA | 1 cut(s) | 304 |
| MluCI | AATT | 2 cut(s) | 41, 298 |
| MluNI | TGGCCA | 1 cut(s) | 304 |
| MlyI | GAGTC | 1 cut(s) | 238 |
| MmeI | TCCRAC | 2 cut(s) | 241, 501 |
| MnlI | CCTC | 6 cut(s) | 245, 319, 337, 429, 464, 539 |
| Mox20I | TGGCCA | 1 cut(s) | 304 |
| MscI | TGGCCA | 1 cut(s) | 304 |
| MslI | CAYNNNNRTG | 1 cut(s) | 197 |
| Msp20I | TGGCCA | 1 cut(s) | 304 |
| MspI | CCGG | 2 cut(s) | 150, 249 |
| MspR9I | CCNGG | 3 cut(s) | 67, 151, 249 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 379 |
| MvaI | CCWGG | 1 cut(s) | 67 |
| MvnI | CGCG | 3 cut(s) | 342, 355, 423 |
| NciI | CCSGG | 2 cut(s) | 151, 249 |
| NdeII | GATC | 4 cut(s) | 28, 139, 358, 400 |
| NlaIII | CATG | 1 cut(s) | 202 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 73 |
| NruI | TCGCGA | 1 cut(s) | 342 |
| PctI | GAATGC | 2 cut(s) | 90, 379 |
| PfoI | TCCNGGA | 1 cut(s) | 247 |
| PkrI | GCNGC | 3 cut(s) | 58, 379, 448 |
| PleI | GAGTC | 1 cut(s) | 238 |
| PpsI | GAGTC | 1 cut(s) | 238 |
| Psp6I | CCWGG | 1 cut(s) | 65 |
| PspGI | CCWGG | 1 cut(s) | 65 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 73 |
| PspPI | GGNCC | 2 cut(s) | 63, 158 |
| PstI | CTGCAG | 1 cut(s) | 382 |
| PsuI | RGATCY | 1 cut(s) | 358 |
| RruI | TCGCGA | 1 cut(s) | 342 |
| RsaI | GTAC | 2 cut(s) | 203, 348 |
| RsaNI | GTAC | 2 cut(s) | 202, 347 |
| RseI | CAYNNNNRTG | 1 cut(s) | 197 |
| SatI | GCNGC | 3 cut(s) | 57, 378, 447 |
| Sau3AI | GATC | 4 cut(s) | 28, 139, 358, 400 |
| Sau96I | GGNCC | 2 cut(s) | 63, 158 |
| SchI | GAGTC | 1 cut(s) | 238 |
| ScrFI | CCNGG | 3 cut(s) | 67, 151, 249 |
| SduI | GDGCHC | 2 cut(s) | 74, 322 |
| SetI | ASST | 5 cut(s) | 68, 175, 348, 367, 385 |
| SfcI | CTRYAG | 1 cut(s) | 378 |
| SinI | GGWCC | 1 cut(s) | 63 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 197 |
| Sse9I | AATT | 2 cut(s) | 41, 298 |
| SsiI | CCGC | 4 cut(s) | 167, 261, 423, 471 |
| SspMI | CTAG | 4 cut(s) | 98, 230, 362, 559 |
| StyD4I | CCNGG | 3 cut(s) | 65, 149, 247 |
| TaaI | ACNGT | 1 cut(s) | 206 |
| TaqI | TCGA | 5 cut(s) | 27, 283, 399, 502, 552 |
| TasI | AATT | 2 cut(s) | 41, 298 |
| TscAI | CASTG | 1 cut(s) | 544 |
| TseI | GCWGC | 3 cut(s) | 56, 377, 446 |
| TspDTI | ATGAA | 1 cut(s) | 83 |
| TspRI | CASTG | 1 cut(s) | 544 |
| VneI | GTGCAC | 1 cut(s) | 318 |
| VpaK11BI | GGWCC | 1 cut(s) | 63 |
| XbaI | TCTAGA | 1 cut(s) | 97 |
| XspI | CTAG | 4 cut(s) | 98, 230, 362, 559 |