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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 631 |
| AccII | CGCG | 6 cut(s) | 38, 257, 324, 513, 575, 577 |
| AciI | CCGC | 9 cut(s) | 38, 86, 255, 257, 260, 474, 511, 540, 577 |
| AclWI | GGATC | 2 cut(s) | 231, 381 |
| AcoI | YGGCCR | 1 cut(s) | 696 |
| AcsI | RAATTY | 1 cut(s) | 393 |
| AcuI | CTGAAG | 1 cut(s) | 207 |
| AcvI | CACGTG | 1 cut(s) | 113 |
| AfaI | GTAC | 1 cut(s) | 152 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 37, 310, 355, 576, 642, 694 |
| AflIII | ACRYGT | 1 cut(s) | 112 |
| AgsI | TTSAA | 1 cut(s) | 398 |
| AjnI | CCWGG | 4 cut(s) | 132, 264, 278, 504 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 330, 362 |
| AluBI | AGCT | 3 cut(s) | 83, 175, 214 |
| AluI | AGCT | 3 cut(s) | 83, 175, 214 |
| AlwI | GGATC | 2 cut(s) | 231, 381 |
| Ama87I | CYCGRG | 1 cut(s) | 170 |
| AoxI | GGCC | 8 cut(s) | 261, 276, 342, 501, 507, 602, 612, 696 |
| ApeKI | GCWGC | 3 cut(s) | 463, 518, 542 |
| ApoI | RAATTY | 1 cut(s) | 393 |
| AspA2I | CCTAGG | 1 cut(s) | 230 |
| AspLEI | GCGC | 2 cut(s) | 324, 577 |
| AspS9I | GGNCC | 3 cut(s) | 262, 502, 508 |
| AsuHPI | GGTGA | 2 cut(s) | 347, 409 |
| AvaI | CYCGRG | 1 cut(s) | 170 |
| AvrII | CCTAGG | 1 cut(s) | 230 |
| AxyI | CCTNAGG | 1 cut(s) | 641 |
| BaeGI | GKGCMC | 2 cut(s) | 286, 636 |
| BalI | TGGCCA | 1 cut(s) | 698 |
| BanI | GGYRCC | 1 cut(s) | 631 |
| BbrPI | CACGTG | 1 cut(s) | 113 |
| BbsI | GAAGAC | 2 cut(s) | 195, 254 |
| BbvCI | CCTCAGC | 1 cut(s) | 75 |
| BbvI | GCAGC | 3 cut(s) | 475, 529, 530 |
| BccI | CCATC | 2 cut(s) | 353, 688 |
| BceAI | ACGGC | 2 cut(s) | 73, 444 |
| BciT130I | CCWGG | 4 cut(s) | 134, 266, 280, 506 |
| BfaI | CTAG | 2 cut(s) | 231, 432 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 515 |
| BisI | GCNGC | 7 cut(s) | 258, 261, 464, 474, 519, 540, 543 |
| BlnI | CCTAGG | 1 cut(s) | 230 |
| BlsI | GCNGC | 7 cut(s) | 259, 262, 465, 475, 520, 541, 544 |
| Bme1390I | CCNGG | 4 cut(s) | 134, 266, 280, 506 |
| BmeT110I | CYCGRG | 1 cut(s) | 170 |
| BmgT120I | GGNCC | 3 cut(s) | 262, 502, 508 |
| BmiI | GGNNCC | 4 cut(s) | 42, 54, 450, 633 |
| BmrFI | CCNGG | 4 cut(s) | 134, 266, 280, 506 |
| BmrI | ACTGGG | 1 cut(s) | 683 |
| BmsI | GCATC | 1 cut(s) | 538 |
| BmuI | ACTGGG | 1 cut(s) | 683 |
| BpiI | GAAGAC | 2 cut(s) | 195, 254 |
| BpmI | CTGGAG | 3 cut(s) | 155, 239, 479 |
| Bpu10I | CCTNAGC | 1 cut(s) | 75 |
| BpuEI | CTTGAG | 2 cut(s) | 68, 382 |
| BsaAI | YACGTR | 1 cut(s) | 113 |
| BsaJI | CCNNGG | 7 cut(s) | 132, 230, 255, 264, 279, 504, 609 |
| BsaWI | WCCGGW | 1 cut(s) | 19 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 37, 310, 355, 576, 642, 694 |
| Bse1I | ACTGG | 4 cut(s) | 193, 222, 462, 678 |
| Bse21I | CCTNAGG | 1 cut(s) | 641 |
| BseBI | CCWGG | 4 cut(s) | 134, 266, 280, 506 |
| BseDI | CCNNGG | 7 cut(s) | 132, 230, 255, 264, 279, 504, 609 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 37, 310, 355, 576, 642, 694 |
| BseMII | CTCAG | 3 cut(s) | 89, 655, 656 |
| BseNI | ACTGG | 4 cut(s) | 193, 222, 462, 678 |
| BseSI | GKGCMC | 2 cut(s) | 286, 636 |
| BseXI | GCAGC | 3 cut(s) | 475, 529, 530 |
| Bsh1236I | CGCG | 6 cut(s) | 38, 257, 324, 513, 575, 577 |
| BshFI | GGCC | 8 cut(s) | 263, 278, 344, 503, 509, 604, 614, 698 |
| BshNI | GGYRCC | 1 cut(s) | 631 |
| BsiHKCI | CYCGRG | 1 cut(s) | 170 |
| BsiSI | CCGG | 1 cut(s) | 20 |
| BslFI | GGGAC | 2 cut(s) | 14, 371 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 37, 310, 355, 576, 642, 694 |
| BsmFI | GGGAC | 2 cut(s) | 14, 371 |
| BsnI | GGCC | 8 cut(s) | 263, 278, 344, 503, 509, 604, 614, 698 |
| BsoBI | CYCGRG | 1 cut(s) | 170 |
| Bsp1286I | GDGCHC | 2 cut(s) | 286, 636 |
| Bsp143I | GATC | 2 cut(s) | 223, 386 |
| BspACI | CCGC | 9 cut(s) | 38, 86, 255, 257, 260, 474, 511, 540, 577 |
| BspANI | GGCC | 8 cut(s) | 263, 278, 344, 503, 509, 604, 614, 698 |
| BspCNI | CTCAG | 3 cut(s) | 88, 654, 657 |
| BspFNI | CGCG | 6 cut(s) | 38, 257, 324, 513, 575, 577 |
| BspHI | TCATGA | 1 cut(s) | 690 |
| BspLI | GGNNCC | 4 cut(s) | 42, 54, 450, 633 |
| BspPI | GGATC | 2 cut(s) | 231, 381 |
| BspQI | GCTCTTC | 1 cut(s) | 628 |
| BspT107I | GGYRCC | 1 cut(s) | 631 |
| BsrI | ACTGG | 4 cut(s) | 193, 222, 462, 678 |
| BssECI | CCNNGG | 7 cut(s) | 132, 230, 255, 264, 279, 504, 609 |
| BssMI | GATC | 2 cut(s) | 223, 386 |
| BssT1I | CCWWGG | 2 cut(s) | 230, 609 |
| Bst2UI | CCWGG | 4 cut(s) | 134, 266, 280, 506 |
| Bst4CI | ACNGT | 1 cut(s) | 288 |
| Bst6I | CTCTTC | 1 cut(s) | 628 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 536 |
| BstBAI | YACGTR | 1 cut(s) | 113 |
| BstC8I | GCNNGC | 5 cut(s) | 81, 177, 276, 438, 511 |
| BstDEI | CTNAG | 3 cut(s) | 75, 641, 665 |
| BstDSI | CCRYGG | 1 cut(s) | 255 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 640 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstFNI | CGCG | 6 cut(s) | 38, 257, 324, 513, 575, 577 |
| BstHHI | GCGC | 2 cut(s) | 324, 577 |
| BstKTI | GATC | 2 cut(s) | 226, 389 |
| BstMBI | GATC | 2 cut(s) | 223, 386 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 85, 437, 482, 515, 527, 536, 548 |
| BstNI | CCWGG | 4 cut(s) | 134, 266, 280, 506 |
| BstNSI | RCATGY | 1 cut(s) | 539 |
| BstSCI | CCNGG | 4 cut(s) | 132, 264, 278, 504 |
| BstSLI | GKGCMC | 2 cut(s) | 286, 636 |
| BstUI | CGCG | 6 cut(s) | 38, 257, 324, 513, 575, 577 |
| BstV1I | GCAGC | 3 cut(s) | 475, 529, 530 |
| BstV2I | GAAGAC | 2 cut(s) | 195, 254 |
| BstX2I | RGATCY | 1 cut(s) | 223 |
| BstYI | RGATCY | 1 cut(s) | 223 |
| Bsu36I | CCTNAGG | 1 cut(s) | 641 |
| BsuRI | GGCC | 8 cut(s) | 263, 278, 344, 503, 509, 604, 614, 698 |
| BtgI | CCRYGG | 1 cut(s) | 255 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| Cac8I | GCNNGC | 5 cut(s) | 81, 177, 276, 438, 511 |
| CciI | TCATGA | 1 cut(s) | 690 |
| CfoI | GCGC | 2 cut(s) | 324, 577 |
| Cfr13I | GGNCC | 3 cut(s) | 262, 502, 508 |
| Cfr42I | CCGCGG | 1 cut(s) | 258 |
| Csp6I | GTAC | 1 cut(s) | 151 |
| CviAII | CATG | 4 cut(s) | 407, 443, 536, 691 |
| CviQI | GTAC | 1 cut(s) | 151 |
| DdeI | CTNAG | 3 cut(s) | 75, 641, 665 |
| DpnI | GATC | 2 cut(s) | 225, 388 |
| DpnII | GATC | 2 cut(s) | 223, 386 |
| EaeI | YGGCCR | 1 cut(s) | 696 |
| Eam1104I | CTCTTC | 1 cut(s) | 628 |
| EarI | CTCTTC | 1 cut(s) | 628 |
| EciI | GGCGGA | 1 cut(s) | 75 |
| Eco130I | CCWWGG | 2 cut(s) | 230, 609 |
| Eco57I | CTGAAG | 1 cut(s) | 207 |
| Eco72I | CACGTG | 1 cut(s) | 113 |
| Eco81I | CCTNAGG | 1 cut(s) | 641 |
| Eco88I | CYCGRG | 1 cut(s) | 170 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 640 |
| EcoRII | CCWGG | 4 cut(s) | 132, 264, 278, 504 |
| EcoT14I | CCWWGG | 2 cut(s) | 230, 609 |
| ErhI | CCWWGG | 2 cut(s) | 230, 609 |
| FaeI | CATG | 4 cut(s) | 410, 446, 539, 694 |
| FaiI | YATR | 6 cut(s) | 206, 408, 444, 480, 537, 692 |
| FaqI | GGGAC | 2 cut(s) | 14, 371 |
| FatI | CATG | 4 cut(s) | 406, 442, 535, 690 |
| FauI | CCCGC | 1 cut(s) | 518 |
| Fnu4HI | GCNGC | 7 cut(s) | 258, 261, 464, 474, 519, 540, 543 |
| FokI | GGATG | 1 cut(s) | 332 |
| Fsp4HI | GCNGC | 7 cut(s) | 258, 261, 464, 474, 519, 540, 543 |
| FspBI | CTAG | 2 cut(s) | 231, 432 |
| GlaI | GCGC | 2 cut(s) | 323, 576 |
| GluI | GCNGC | 7 cut(s) | 258, 261, 464, 474, 519, 540, 543 |
| GsuI | CTGGAG | 3 cut(s) | 155, 239, 479 |
| HaeIII | GGCC | 8 cut(s) | 263, 278, 344, 503, 509, 604, 614, 698 |
| HapII | CCGG | 1 cut(s) | 20 |
| HhaI | GCGC | 2 cut(s) | 324, 577 |
| Hin1II | CATG | 4 cut(s) | 410, 446, 539, 694 |
| Hin6I | GCGC | 2 cut(s) | 322, 575 |
| HinP1I | GCGC | 2 cut(s) | 322, 575 |
| HinfI | GANTC | 4 cut(s) | 127, 137, 314, 376 |
| HpaII | CCGG | 1 cut(s) | 20 |
| HphI | GGTGA | 2 cut(s) | 347, 409 |
| Hpy166II | GTNNAC | 1 cut(s) | 338 |
| Hpy188I | TCNGA | 3 cut(s) | 142, 158, 666 |
| Hpy188III | TCNNGA | 4 cut(s) | 47, 170, 398, 691 |
| Hpy8I | GTNNAC | 1 cut(s) | 338 |
| HpyAV | CCTTC | 2 cut(s) | 586, 722 |
| HpyCH4III | ACNGT | 1 cut(s) | 288 |
| HpyCH4IV | ACGT | 1 cut(s) | 112 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 85, 437, 482, 515, 527, 536, 548 |
| HpyF3I | CTNAG | 3 cut(s) | 75, 641, 665 |
| HpySE526I | ACGT | 1 cut(s) | 112 |
| Hsp92II | CATG | 4 cut(s) | 410, 446, 539, 694 |
| HspAI | GCGC | 2 cut(s) | 322, 575 |
| KspI | CCGCGG | 1 cut(s) | 258 |
| Kzo9I | GATC | 2 cut(s) | 223, 386 |
| LguI | GCTCTTC | 1 cut(s) | 628 |
| LmnI | GCTCC | 4 cut(s) | 58, 88, 460, 579 |
| Lsp1109I | GCAGC | 3 cut(s) | 475, 529, 530 |
| LweI | GCATC | 1 cut(s) | 538 |
| MaeI | CTAG | 2 cut(s) | 231, 432 |
| MaeII | ACGT | 1 cut(s) | 112 |
| MaeIII | GTNAC | 2 cut(s) | 124, 424 |
| MalI | GATC | 2 cut(s) | 225, 388 |
| MboI | GATC | 2 cut(s) | 223, 386 |
| MboII | GAAGA | 6 cut(s) | 155, 158, 200, 218, 259, 615 |
| MflI | RGATCY | 1 cut(s) | 223 |
| MhlI | GDGCHC | 2 cut(s) | 286, 636 |
| MlsI | TGGCCA | 1 cut(s) | 698 |
| MluCI | AATT | 2 cut(s) | 95, 393 |
| MluNI | TGGCCA | 1 cut(s) | 698 |
| MlyI | GAGTC | 3 cut(s) | 121, 146, 308 |
| Mox20I | TGGCCA | 1 cut(s) | 698 |
| MscI | TGGCCA | 1 cut(s) | 698 |
| MseI | TTAA | 2 cut(s) | 120, 650 |
| Msp20I | TGGCCA | 1 cut(s) | 698 |
| MspA1I | CMGCKG | 2 cut(s) | 257, 542 |
| MspI | CCGG | 1 cut(s) | 20 |
| MspR9I | CCNGG | 4 cut(s) | 134, 266, 280, 506 |
| MvaI | CCWGG | 4 cut(s) | 134, 266, 280, 506 |
| MvnI | CGCG | 6 cut(s) | 38, 257, 324, 513, 575, 577 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 85, 437, 482, 515, 527, 536, 548 |
| NdeII | GATC | 2 cut(s) | 223, 386 |
| NlaIII | CATG | 4 cut(s) | 410, 446, 539, 694 |
| NlaIV | GGNNCC | 4 cut(s) | 42, 54, 450, 633 |
| NmuCI | GTSAC | 1 cut(s) | 124 |
| NspI | RCATGY | 1 cut(s) | 539 |
| PaeR7I | CTCGAG | 1 cut(s) | 170 |
| PagI | TCATGA | 1 cut(s) | 690 |
| PciSI | GCTCTTC | 1 cut(s) | 628 |
| PfeI | GAWTC | 1 cut(s) | 376 |
| PkrI | GCNGC | 7 cut(s) | 259, 262, 465, 475, 520, 541, 544 |
| PleI | GAGTC | 3 cut(s) | 121, 145, 308 |
| PmaCI | CACGTG | 1 cut(s) | 113 |
| PmlI | CACGTG | 1 cut(s) | 113 |
| PpsI | GAGTC | 3 cut(s) | 121, 145, 308 |
| Ppu21I | YACGTR | 1 cut(s) | 113 |
| Psp6I | CCWGG | 4 cut(s) | 132, 264, 278, 504 |
| PspCI | CACGTG | 1 cut(s) | 113 |
| PspGI | CCWGG | 4 cut(s) | 132, 264, 278, 504 |
| PspN4I | GGNNCC | 4 cut(s) | 42, 54, 450, 633 |
| PspPI | GGNCC | 3 cut(s) | 262, 502, 508 |
| PsuI | RGATCY | 1 cut(s) | 223 |
| RsaI | GTAC | 1 cut(s) | 152 |
| RsaNI | GTAC | 1 cut(s) | 151 |
| SacII | CCGCGG | 1 cut(s) | 258 |
| SapI | GCTCTTC | 1 cut(s) | 628 |
| SaqAI | TTAA | 2 cut(s) | 120, 650 |
| SatI | GCNGC | 7 cut(s) | 258, 261, 464, 474, 519, 540, 543 |
| Sau3AI | GATC | 2 cut(s) | 223, 386 |
| Sau96I | GGNCC | 3 cut(s) | 262, 502, 508 |
| SchI | GAGTC | 3 cut(s) | 121, 146, 308 |
| ScrFI | CCNGG | 4 cut(s) | 134, 266, 280, 506 |
| SduI | GDGCHC | 2 cut(s) | 286, 636 |
| SfaNI | GCATC | 1 cut(s) | 538 |
| Sfr274I | CTCGAG | 1 cut(s) | 170 |
| Sfr303I | CCGCGG | 1 cut(s) | 258 |
| SgrBI | CCGCGG | 1 cut(s) | 258 |
| SlaI | CTCGAG | 1 cut(s) | 170 |
| SmlI | CTYRAG | 3 cut(s) | 47, 170, 361 |
| SmoI | CTYRAG | 3 cut(s) | 47, 170, 361 |
| Sse9I | AATT | 2 cut(s) | 95, 393 |
| SsiI | CCGC | 9 cut(s) | 38, 86, 255, 257, 260, 474, 511, 540, 577 |
| SspMI | CTAG | 2 cut(s) | 231, 432 |
| StyD4I | CCNGG | 4 cut(s) | 132, 264, 278, 504 |
| StyI | CCWWGG | 2 cut(s) | 230, 609 |
| TaaI | ACNGT | 1 cut(s) | 288 |
| TaiI | ACGT | 1 cut(s) | 115 |
| TaqI | TCGA | 2 cut(s) | 171, 385 |
| TasI | AATT | 2 cut(s) | 95, 393 |
| TauI | GCSGC | 4 cut(s) | 260, 263, 476, 542 |
| TfiI | GAWTC | 1 cut(s) | 376 |
| Tru1I | TTAA | 2 cut(s) | 120, 650 |
| Tru9I | TTAA | 2 cut(s) | 120, 650 |
| TseFI | GTSAC | 1 cut(s) | 124 |
| TseI | GCWGC | 3 cut(s) | 463, 518, 542 |
| Tsp45I | GTSAC | 1 cut(s) | 124 |
| TspDTI | ATGAA | 2 cut(s) | 17, 668 |
| TspGWI | ACGGA | 2 cut(s) | 326, 412 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 640 |
| XapI | RAATTY | 1 cut(s) | 393 |
| XceI | RCATGY | 1 cut(s) | 539 |
| XhoI | CTCGAG | 1 cut(s) | 170 |
| XmaJI | CCTAGG | 1 cut(s) | 230 |
| XspI | CTAG | 2 cut(s) | 231, 432 |