Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 3 cut(s) | 835, 936, 1964 |
| Acc36I | ACCTGC | 3 cut(s) | 371, 1882, 2496 |
| AccB1I | GGYRCC | 1 cut(s) | 269 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1505 |
| AccBSI | CCGCTC | 4 cut(s) | 1017, 1653, 1954, 2362 |
| AcoI | YGGCCR | 4 cut(s) | 302, 921, 1507, 1540 |
| AcuI | CTGAAG | 7 cut(s) | 1272, 1599, 1605, 1730, 1830, 1881, 2516 |
| AcyI | GRCGYC | 1 cut(s) | 1125 |
| AdeI | CACNNNGTG | 2 cut(s) | 519, 1240 |
| AfaI | GTAC | 2 cut(s) | 715, 1401 |
| AfeI | AGCGCT | 3 cut(s) | 1434, 1525, 1899 |
| AflIII | ACRYGT | 1 cut(s) | 834 |
| AgeI | ACCGGT | 1 cut(s) | 772 |
| AgsI | TTSAA | 4 cut(s) | 101, 1928, 2045, 2069 |
| AjnI | CCWGG | 7 cut(s) | 247, 1127, 1268, 1452, 1530, 2204, 2271 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 864, 896 |
| Alw21I | GWGCWC | 3 cut(s) | 575, 787, 1569 |
| Alw26I | GTCTC | 6 cut(s) | 320, 627, 821, 1288, 2435, 2643 |
| Alw44I | GTGCAC | 1 cut(s) | 571 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 264, 1577, 1753 |
| Ama87I | CYCGRG | 4 cut(s) | 624, 764, 1820, 2192 |
| Aor51HI | AGCGCT | 3 cut(s) | 1434, 1525, 1899 |
| ApaI | GGGCCC | 3 cut(s) | 1164, 2114, 2560 |
| ApaLI | GTGCAC | 1 cut(s) | 571 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 479, 511, 1304, 1336 |
| AseI | ATTAAT | 1 cut(s) | 2367 |
| AsiGI | ACCGGT | 1 cut(s) | 772 |
| AsuC2I | CCSGG | 3 cut(s) | 1448, 1964, 2253 |
| AsuHPI | GGTGA | 2 cut(s) | 2317, 2584 |
| AsuNHI | GCTAGC | 1 cut(s) | 1435 |
| AvaI | CYCGRG | 4 cut(s) | 624, 764, 1820, 2192 |
| AvaII | GGWCC | 7 cut(s) | 158, 222, 1657, 1718, 2234, 2485, 2514 |
| AxyI | CCTNAGG | 1 cut(s) | 2127 |
| BaeGI | GKGCMC | 5 cut(s) | 274, 575, 1164, 2114, 2560 |
| BalI | TGGCCA | 2 cut(s) | 304, 1509 |
| BamHI | GGATCC | 2 cut(s) | 867, 1794 |
| BanI | GGYRCC | 1 cut(s) | 269 |
| BanII | GRGCYC | 8 cut(s) | 566, 765, 787, 1164, 1176, 2114, 2272, 2560 |
| BauI | CACGAG | 1 cut(s) | 1175 |
| BbsI | GAAGAC | 2 cut(s) | 89, 1593 |
| Bbv12I | GWGCWC | 3 cut(s) | 575, 787, 1569 |
| BbvCI | CCTCAGC | 1 cut(s) | 1038 |
| BceAI | ACGGC | 4 cut(s) | 220, 763, 879, 1223 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 38, 61, 72, 95, 1304, 1338 |
| BciT130I | CCWGG | 7 cut(s) | 249, 1129, 1270, 1454, 1532, 2206, 2273 |
| BcnI | CCSGG | 3 cut(s) | 1448, 1964, 2253 |
| BcoDI | GTCTC | 6 cut(s) | 320, 627, 821, 1288, 2435, 2643 |
| BfaI | CTAG | 8 cut(s) | 542, 728, 779, 1436, 1799, 2397, 2606, 2618 |
| BfmI | CTRYAG | 2 cut(s) | 396, 2219 |
| BfoI | RGCGCY | 4 cut(s) | 167, 1436, 1527, 1901 |
| BfuAI | ACCTGC | 3 cut(s) | 371, 1882, 2496 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1089 |
| Bme18I | GGWCC | 7 cut(s) | 158, 222, 1657, 1718, 2234, 2485, 2514 |
| BmeT110I | CYCGRG | 4 cut(s) | 624, 764, 1820, 2192 |
| BmrI | ACTGGG | 2 cut(s) | 164, 2554 |
| BmsI | GCATC | 7 cut(s) | 81, 163, 1095, 1362, 1634, 2152, 2164 |
| BmtI | GCTAGC | 1 cut(s) | 1439 |
| BmuI | ACTGGG | 2 cut(s) | 164, 2554 |
| BpiI | GAAGAC | 2 cut(s) | 89, 1593 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 499, 531, 1046, 1078, 2460, 2492 |
| BpmI | CTGGAG | 1 cut(s) | 270 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1038, 2358, 2652 |
| BpuEI | CTTGAG | 2 cut(s) | 15, 2606 |
| BpuMI | CCSGG | 3 cut(s) | 1448, 1964, 2253 |
| Bsa29I | ATCGAT | 1 cut(s) | 554 |
| BsaHI | GRCGYC | 1 cut(s) | 1125 |
| BsaI | GGTCTC | 2 cut(s) | 627, 1288 |
| BsaJI | CCNNGG | 6 cut(s) | 1239, 1452, 1530, 1673, 2271, 2568 |
| BsaWI | WCCGGW | 2 cut(s) | 149, 772 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bse118I | RCCGGY | 5 cut(s) | 772, 919, 1180, 1538, 1715 |
| Bse1I | ACTGG | 7 cut(s) | 159, 212, 230, 715, 1084, 2021, 2560 |
| Bse21I | CCTNAGG | 1 cut(s) | 2127 |
| Bse3DI | GCAATG | 1 cut(s) | 2640 |
| BseBI | CCWGG | 7 cut(s) | 249, 1129, 1270, 1454, 1532, 2206, 2273 |
| BseCI | ATCGAT | 1 cut(s) | 554 |
| BseDI | CCNNGG | 6 cut(s) | 1239, 1452, 1530, 1673, 2271, 2568 |
| BseGI | GGATG | 6 cut(s) | 305, 817, 903, 1399, 2218, 2520 |
| BseMI | GCAATG | 1 cut(s) | 2640 |
| BseNI | ACTGG | 7 cut(s) | 159, 212, 230, 715, 1084, 2021, 2560 |
| BseRI | GAGGAG | 1 cut(s) | 1431 |
| BseSI | GKGCMC | 5 cut(s) | 274, 575, 1164, 2114, 2560 |
| BseX3I | CGGCCG | 1 cut(s) | 921 |
| BseYI | CCCAGC | 5 cut(s) | 264, 613, 1407, 1732, 2078 |
| BsgI | GTGCAG | 4 cut(s) | 339, 673, 1860, 1920 |
| Bsh1285I | CGRYCG | 7 cut(s) | 924, 928, 982, 1968, 2148, 2382, 2388 |
| BshNI | GGYRCC | 1 cut(s) | 269 |
| BshTI | ACCGGT | 1 cut(s) | 772 |
| BshVI | ATCGAT | 1 cut(s) | 554 |
| BsiEI | CGRYCG | 7 cut(s) | 924, 928, 982, 1968, 2148, 2382, 2388 |
| BsiHKAI | GWGCWC | 3 cut(s) | 575, 787, 1569 |
| BsiHKCI | CYCGRG | 4 cut(s) | 624, 764, 1820, 2192 |
| BslFI | GGGAC | 1 cut(s) | 2498 |
| BsmAI | GTCTC | 6 cut(s) | 320, 627, 821, 1288, 2435, 2643 |
| BsmFI | GGGAC | 1 cut(s) | 2498 |
| BsmI | GAATGC | 1 cut(s) | 90 |
| Bso31I | GGTCTC | 2 cut(s) | 627, 1288 |
| BsoBI | CYCGRG | 4 cut(s) | 624, 764, 1820, 2192 |
| Bsp120I | GGGCCC | 3 cut(s) | 1160, 2110, 2556 |
| Bsp19I | CCATGG | 1 cut(s) | 1673 |
| Bsp68I | TCGCGA | 3 cut(s) | 342, 1473, 2451 |
| BspDI | ATCGAT | 1 cut(s) | 554 |
| BspMI | ACCTGC | 3 cut(s) | 371, 1882, 2496 |
| BspOI | GCTAGC | 1 cut(s) | 1439 |
| BspQI | GCTCTTC | 2 cut(s) | 1749, 1857 |
| BspT107I | GGYRCC | 1 cut(s) | 269 |
| BspTNI | GGTCTC | 2 cut(s) | 627, 1288 |
| BsrBI | CCGCTC | 4 cut(s) | 1017, 1653, 1954, 2362 |
| BsrDI | GCAATG | 1 cut(s) | 2640 |
| BsrFI | RCCGGY | 5 cut(s) | 772, 919, 1180, 1538, 1715 |
| BsrI | ACTGG | 7 cut(s) | 159, 212, 230, 715, 1084, 2021, 2560 |
| BssAI | RCCGGY | 5 cut(s) | 772, 919, 1180, 1538, 1715 |
| BssECI | CCNNGG | 6 cut(s) | 1239, 1452, 1530, 1673, 2271, 2568 |
| BssNI | GRCGYC | 1 cut(s) | 1125 |
| BssSI | CACGAG | 1 cut(s) | 1175 |
| BssT1I | CCWWGG | 1 cut(s) | 1673 |
| Bst2BI | CACGAG | 1 cut(s) | 1175 |
| Bst2UI | CCWGG | 7 cut(s) | 249, 1129, 1270, 1454, 1532, 2206, 2273 |
| Bst4CI | ACNGT | 5 cut(s) | 577, 621, 1621, 1981, 2389 |
| Bst6I | CTCTTC | 7 cut(s) | 33, 700, 1272, 1597, 1673, 1749, 1857 |
| BstACI | GRCGYC | 1 cut(s) | 1125 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 775 |
| BstDSI | CCRYGG | 3 cut(s) | 1239, 1673, 2568 |
| BstF5I | GGATG | 6 cut(s) | 305, 817, 903, 1399, 2218, 2520 |
| BstH2I | RGCGCY | 4 cut(s) | 167, 1436, 1527, 1901 |
| BstMAI | GTCTC | 6 cut(s) | 320, 627, 821, 1288, 2435, 2643 |
| BstMCI | CGRYCG | 7 cut(s) | 924, 928, 982, 1968, 2148, 2382, 2388 |
| BstNI | CCWGG | 7 cut(s) | 249, 1129, 1270, 1454, 1532, 2206, 2273 |
| BstNSI | RCATGY | 3 cut(s) | 799, 838, 1732 |
| BstSFI | CTRYAG | 2 cut(s) | 396, 2219 |
| BstSLI | GKGCMC | 5 cut(s) | 274, 575, 1164, 2114, 2560 |
| BstV2I | GAAGAC | 2 cut(s) | 89, 1593 |
| BstX2I | RGATCY | 3 cut(s) | 358, 867, 1794 |
| BstYI | RGATCY | 3 cut(s) | 358, 867, 1794 |
| BstZI | CGGCCG | 1 cut(s) | 921 |
| Bsu15I | ATCGAT | 1 cut(s) | 554 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2127 |
| BsuTUI | ATCGAT | 1 cut(s) | 554 |
| BtgI | CCRYGG | 3 cut(s) | 1239, 1673, 2568 |
| BtgZI | GCGATG | 1 cut(s) | 10 |
| BtsCI | GGATG | 6 cut(s) | 305, 817, 903, 1399, 2218, 2520 |
| BtsIMutI | CAGTG | 4 cut(s) | 708, 1665, 2157, 2310 |
| BtuMI | TCGCGA | 3 cut(s) | 342, 1473, 2451 |
| BveI | ACCTGC | 3 cut(s) | 371, 1882, 2496 |
| CaiI | CAGNNNCTG | 3 cut(s) | 264, 1577, 1753 |
| Cfr10I | RCCGGY | 5 cut(s) | 772, 919, 1180, 1538, 1715 |
| Cfr42I | CCGCGG | 1 cut(s) | 2571 |
| ClaI | ATCGAT | 1 cut(s) | 554 |
| CseI | GACGC | 4 cut(s) | 197, 1133, 1859, 2247 |
| CsiI | ACCWGGT | 1 cut(s) | 1268 |
| Csp6I | GTAC | 2 cut(s) | 714, 1400 |
| CspAI | ACCGGT | 1 cut(s) | 772 |
| CviAII | CATG | 5 cut(s) | 609, 796, 835, 1674, 1729 |
| CviQI | GTAC | 2 cut(s) | 714, 1400 |
| DraIII | CACNNNGTG | 2 cut(s) | 519, 1240 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 835, 936, 1964 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 835, 936, 1964 |
| EaeI | YGGCCR | 4 cut(s) | 302, 921, 1507, 1540 |
| EagI | CGGCCG | 1 cut(s) | 921 |
| Eam1104I | CTCTTC | 7 cut(s) | 33, 700, 1272, 1597, 1673, 1749, 1857 |
| EarI | CTCTTC | 7 cut(s) | 33, 700, 1272, 1597, 1673, 1749, 1857 |
| EciI | GGCGGA | 1 cut(s) | 881 |
| Ecl136II | GAGCTC | 1 cut(s) | 785 |
| EclXI | CGGCCG | 1 cut(s) | 921 |
| Eco130I | CCWWGG | 1 cut(s) | 1673 |
| Eco147I | AGGCCT | 1 cut(s) | 2424 |
| Eco24I | GRGCYC | 8 cut(s) | 566, 765, 787, 1164, 1176, 2114, 2272, 2560 |
| Eco31I | GGTCTC | 2 cut(s) | 627, 1288 |
| Eco32I | GATATC | 1 cut(s) | 528 |
| Eco47I | GGWCC | 7 cut(s) | 158, 222, 1657, 1718, 2234, 2485, 2514 |
| Eco47III | AGCGCT | 3 cut(s) | 1434, 1525, 1899 |
| Eco52I | CGGCCG | 1 cut(s) | 921 |
| Eco53kI | GAGCTC | 1 cut(s) | 785 |
| Eco57I | CTGAAG | 7 cut(s) | 1272, 1599, 1605, 1730, 1830, 1881, 2516 |
| Eco81I | CCTNAGG | 1 cut(s) | 2127 |
| Eco88I | CYCGRG | 4 cut(s) | 624, 764, 1820, 2192 |
| EcoICRI | GAGCTC | 1 cut(s) | 785 |
| EcoO109I | RGGNCCY | 6 cut(s) | 1161, 2111, 2134, 2234, 2485, 2556 |
| EcoRII | CCWGG | 7 cut(s) | 247, 1127, 1268, 1452, 1530, 2204, 2271 |
| EcoRV | GATATC | 1 cut(s) | 528 |
| EcoT14I | CCWWGG | 1 cut(s) | 1673 |
| EcoT38I | GRGCYC | 8 cut(s) | 566, 765, 787, 1164, 1176, 2114, 2272, 2560 |
| ErhI | CCWWGG | 1 cut(s) | 1673 |
| FaeI | CATG | 5 cut(s) | 612, 799, 838, 1677, 1732 |
| FaqI | GGGAC | 1 cut(s) | 2498 |
| FatI | CATG | 5 cut(s) | 608, 795, 834, 1673, 1728 |
| FauI | CCCGC | 6 cut(s) | 342, 348, 915, 1022, 2101, 2196 |
| FokI | GGATG | 6 cut(s) | 292, 804, 890, 1406, 2225, 2507 |
| FriOI | GRGCYC | 8 cut(s) | 566, 765, 787, 1164, 1176, 2114, 2272, 2560 |
| FspBI | CTAG | 8 cut(s) | 542, 728, 779, 1436, 1799, 2397, 2606, 2618 |
| GsaI | CCCAGC | 5 cut(s) | 268, 617, 1411, 1736, 2082 |
| GsuI | CTGGAG | 1 cut(s) | 270 |
| HaeII | RGCGCY | 4 cut(s) | 167, 1436, 1527, 1901 |
| HgaI | GACGC | 4 cut(s) | 197, 1133, 1859, 2247 |
| Hin1I | GRCGYC | 1 cut(s) | 1125 |
| Hin1II | CATG | 5 cut(s) | 612, 799, 838, 1677, 1732 |
| HincII | GTYRAC | 2 cut(s) | 594, 2565 |
| HindII | GTYRAC | 2 cut(s) | 594, 2565 |
| HinfI | GANTC | 8 cut(s) | 244, 648, 721, 930, 1222, 1300, 1468, 1589 |
| HphI | GGTGA | 2 cut(s) | 2317, 2584 |
| Hpy166II | GTNNAC | 5 cut(s) | 573, 594, 1243, 2325, 2565 |
| Hpy8I | GTNNAC | 5 cut(s) | 573, 594, 1243, 2325, 2565 |
| Hpy99I | CGWCG | 7 cut(s) | 191, 442, 647, 761, 1127, 1316, 1625 |
| HpyAV | CCTTC | 7 cut(s) | 137, 234, 1250, 1368, 1732, 1854, 2519 |
| HpyCH4III | ACNGT | 5 cut(s) | 577, 621, 1621, 1981, 2389 |
| HpyCH4IV | ACGT | 1 cut(s) | 756 |
| HpyCH4V | TGCA | 7 cut(s) | 320, 573, 690, 1325, 1877, 1937, 2392 |
| HpySE526I | ACGT | 1 cut(s) | 756 |
| Hsp92I | GRCGYC | 1 cut(s) | 1125 |
| Hsp92II | CATG | 5 cut(s) | 612, 799, 838, 1677, 1732 |
| KroI | GCCGGC | 2 cut(s) | 1180, 1538 |
| KroNI | GCCGGC | 2 cut(s) | 1182, 1540 |
| KspI | CCGCGG | 1 cut(s) | 2571 |
| LguI | GCTCTTC | 2 cut(s) | 1749, 1857 |
| LmnI | GCTCC | 5 cut(s) | 10, 129, 782, 1444, 2075 |
| LweI | GCATC | 7 cut(s) | 81, 163, 1095, 1362, 1634, 2152, 2164 |
| MabI | ACCWGGT | 1 cut(s) | 1268 |
| MaeI | CTAG | 8 cut(s) | 542, 728, 779, 1436, 1799, 2397, 2606, 2618 |
| MaeII | ACGT | 1 cut(s) | 756 |
| MaeIII | GTNAC | 2 cut(s) | 730, 2572 |
| MbiI | CCGCTC | 4 cut(s) | 1017, 1653, 1954, 2362 |
| MfeI | CAATTG | 4 cut(s) | 1100, 1291, 1869, 2540 |
| MflI | RGATCY | 3 cut(s) | 358, 867, 1794 |
| MlsI | TGGCCA | 2 cut(s) | 304, 1509 |
| MluCI | AATT | 4 cut(s) | 1100, 1291, 1869, 2540 |
| MluNI | TGGCCA | 2 cut(s) | 304, 1509 |
| MlyI | GAGTC | 6 cut(s) | 238, 715, 924, 1216, 1294, 1583 |
| MmeI | TCCRAC | 3 cut(s) | 162, 503, 1806 |
| Mox20I | TGGCCA | 2 cut(s) | 304, 1509 |
| MroNI | GCCGGC | 2 cut(s) | 1180, 1538 |
| MscI | TGGCCA | 2 cut(s) | 304, 1509 |
| MseI | TTAA | 2 cut(s) | 44, 2367 |
| Msp20I | TGGCCA | 2 cut(s) | 304, 1509 |
| MspA1I | CMGCKG | 5 cut(s) | 323, 1037, 1750, 2150, 2570 |
| MunI | CAATTG | 4 cut(s) | 1100, 1291, 1869, 2540 |
| Mva1269I | GAATGC | 1 cut(s) | 90 |
| MvaI | CCWGG | 7 cut(s) | 249, 1129, 1270, 1454, 1532, 2206, 2273 |
| NaeI | GCCGGC | 2 cut(s) | 1182, 1540 |
| NciI | CCSGG | 3 cut(s) | 1448, 1964, 2253 |
| NcoI | CCATGG | 1 cut(s) | 1673 |
| NgoMIV | GCCGGC | 2 cut(s) | 1180, 1538 |
| NheI | GCTAGC | 1 cut(s) | 1435 |
| NlaIII | CATG | 5 cut(s) | 612, 799, 838, 1677, 1732 |
| NmeAIII | GCCGAG | 1 cut(s) | 2344 |
| NmuCI | GTSAC | 2 cut(s) | 730, 2572 |
| NruI | TCGCGA | 3 cut(s) | 342, 1473, 2451 |
| NspI | RCATGY | 3 cut(s) | 799, 838, 1732 |
| PceI | AGGCCT | 1 cut(s) | 2424 |
| PciI | ACATGT | 1 cut(s) | 834 |
| PciSI | GCTCTTC | 2 cut(s) | 1749, 1857 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 581, 753, 1470, 2299 |
| PctI | GAATGC | 1 cut(s) | 90 |
| PdiI | GCCGGC | 2 cut(s) | 1182, 1540 |
| PfeI | GAWTC | 2 cut(s) | 648, 1468 |
| PflFI | GACNNNGTC | 1 cut(s) | 156 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1505 |
| PfoI | TCCNGGA | 1 cut(s) | 247 |
| PinAI | ACCGGT | 1 cut(s) | 772 |
| Ple19I | CGATCG | 1 cut(s) | 928 |
| PleI | GAGTC | 6 cut(s) | 238, 715, 924, 1216, 1294, 1583 |
| PpsI | GAGTC | 6 cut(s) | 238, 715, 924, 1216, 1294, 1583 |
| PpuMI | RGGWCCY | 2 cut(s) | 2234, 2485 |
| PscI | ACATGT | 1 cut(s) | 834 |
| PshBI | ATTAAT | 1 cut(s) | 2367 |
| Psp124BI | GAGCTC | 1 cut(s) | 787 |
| Psp5II | RGGWCCY | 2 cut(s) | 2234, 2485 |
| Psp6I | CCWGG | 7 cut(s) | 247, 1127, 1268, 1452, 1530, 2204, 2271 |
| PspFI | CCCAGC | 5 cut(s) | 264, 613, 1407, 1732, 2078 |
| PspGI | CCWGG | 7 cut(s) | 247, 1127, 1268, 1452, 1530, 2204, 2271 |
| PspOMI | GGGCCC | 3 cut(s) | 1160, 2110, 2556 |
| PspPPI | RGGWCCY | 2 cut(s) | 2234, 2485 |
| PstNI | CAGNNNCTG | 3 cut(s) | 264, 1577, 1753 |
| PsuI | RGATCY | 3 cut(s) | 358, 867, 1794 |
| PsyI | GACNNNGTC | 1 cut(s) | 156 |
| PvuI | CGATCG | 1 cut(s) | 928 |
| PvuII | CAGCTG | 1 cut(s) | 1750 |
| RruI | TCGCGA | 3 cut(s) | 342, 1473, 2451 |
| RsaI | GTAC | 2 cut(s) | 715, 1401 |
| RsaNI | GTAC | 2 cut(s) | 714, 1400 |
| SacI | GAGCTC | 1 cut(s) | 787 |
| SacII | CCGCGG | 1 cut(s) | 2571 |
| SapI | GCTCTTC | 2 cut(s) | 1749, 1857 |
| SaqAI | TTAA | 2 cut(s) | 44, 2367 |
| SchI | GAGTC | 6 cut(s) | 238, 715, 924, 1216, 1294, 1583 |
| SexAI | ACCWGGT | 1 cut(s) | 1268 |
| SfaNI | GCATC | 7 cut(s) | 81, 163, 1095, 1362, 1634, 2152, 2164 |
| SfcI | CTRYAG | 2 cut(s) | 396, 2219 |
| Sfr303I | CCGCGG | 1 cut(s) | 2571 |
| SgrBI | CCGCGG | 1 cut(s) | 2571 |
| SinI | GGWCC | 7 cut(s) | 158, 222, 1657, 1718, 2234, 2485, 2514 |
| SmlI | CTYRAG | 2 cut(s) | 30, 2585 |
| SmoI | CTYRAG | 2 cut(s) | 30, 2585 |
| Sse9I | AATT | 4 cut(s) | 1100, 1291, 1869, 2540 |
| SseBI | AGGCCT | 1 cut(s) | 2424 |
| SspI | AATATT | 2 cut(s) | 665, 2279 |
| SspMI | CTAG | 8 cut(s) | 542, 728, 779, 1436, 1799, 2397, 2606, 2618 |
| SstI | GAGCTC | 1 cut(s) | 787 |
| StuI | AGGCCT | 1 cut(s) | 2424 |
| StyI | CCWWGG | 1 cut(s) | 1673 |
| TaaI | ACNGT | 5 cut(s) | 577, 621, 1621, 1981, 2389 |
| TaiI | ACGT | 1 cut(s) | 759 |
| TaqI | TCGA | 9 cut(s) | 115, 283, 554, 584, 604, 642, 928, 1956, 2419 |
| TaqII | GACCGA | 2 cut(s) | 210, 1715 |
| TasI | AATT | 4 cut(s) | 1100, 1291, 1869, 2540 |
| TauI | GCSGC | 6 cut(s) | 1005, 1037, 1653, 1715, 2000, 2298 |
| TfiI | GAWTC | 2 cut(s) | 648, 1468 |
| Tru1I | TTAA | 2 cut(s) | 44, 2367 |
| Tru9I | TTAA | 2 cut(s) | 44, 2367 |
| TscAI | CASTG | 4 cut(s) | 715, 1672, 2164, 2317 |
| TseFI | GTSAC | 2 cut(s) | 730, 2572 |
| Tsp45I | GTSAC | 2 cut(s) | 730, 2572 |
| TspDTI | ATGAA | 4 cut(s) | 670, 1278, 1700, 2385 |
| TspGWI | ACGGA | 4 cut(s) | 660, 1260, 1276, 1807 |
| TspRI | CASTG | 4 cut(s) | 715, 1672, 2164, 2317 |
| Tth111I | GACNNNGTC | 1 cut(s) | 156 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1505 |
| VneI | GTGCAC | 1 cut(s) | 571 |
| VpaK11BI | GGWCC | 7 cut(s) | 158, 222, 1657, 1718, 2234, 2485, 2514 |
| VspI | ATTAAT | 1 cut(s) | 2367 |
| XceI | RCATGY | 3 cut(s) | 799, 838, 1732 |
| XspI | CTAG | 8 cut(s) | 542, 728, 779, 1436, 1799, 2397, 2606, 2618 |