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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 109, 449 |
| AccBSI | CCGCTC | 1 cut(s) | 107 |
| AccII | CGCG | 6 cut(s) | 15, 101, 138, 168, 378, 402 |
| AciI | CCGC | 6 cut(s) | 13, 99, 101, 105, 136, 138 |
| AclWI | GGATC | 3 cut(s) | 89, 210, 218 |
| AcoI | YGGCCR | 1 cut(s) | 102 |
| AcsI | RAATTY | 1 cut(s) | 38 |
| AcuI | CTGAAG | 1 cut(s) | 51 |
| AfaI | GTAC | 2 cut(s) | 6, 22 |
| AfeI | AGCGCT | 1 cut(s) | 189 |
| AgsI | TTSAA | 2 cut(s) | 47, 242 |
| AjnI | CCWGG | 1 cut(s) | 363 |
| AluBI | AGCT | 3 cut(s) | 58, 420, 469 |
| AluI | AGCT | 3 cut(s) | 58, 420, 469 |
| Alw21I | GWGCWC | 1 cut(s) | 60 |
| Alw26I | GTCTC | 1 cut(s) | 360 |
| AlwI | GGATC | 3 cut(s) | 89, 210, 218 |
| Aor51HI | AGCGCT | 1 cut(s) | 189 |
| AoxI | GGCC | 5 cut(s) | 102, 139, 273, 294, 366 |
| ApeKI | GCWGC | 2 cut(s) | 404, 407 |
| ApoI | RAATTY | 1 cut(s) | 38 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 384 |
| AspA2I | CCTAGG | 1 cut(s) | 175 |
| AspLEI | GCGC | 4 cut(s) | 190, 343, 402, 404 |
| AspS9I | GGNCC | 2 cut(s) | 295, 367 |
| AsuNHI | GCTAGC | 1 cut(s) | 416 |
| AvrII | CCTAGG | 1 cut(s) | 175 |
| BanII | GRGCYC | 2 cut(s) | 60, 318 |
| Bbv12I | GWGCWC | 1 cut(s) | 60 |
| BbvI | GCAGC | 2 cut(s) | 391, 394 |
| BccI | CCATC | 2 cut(s) | 32, 231 |
| BceAI | ACGGC | 2 cut(s) | 309, 354 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 425, 459 |
| BciT130I | CCWGG | 1 cut(s) | 365 |
| BcoDI | GTCTC | 1 cut(s) | 360 |
| BfaI | CTAG | 4 cut(s) | 176, 344, 417, 428 |
| BfoI | RGCGCY | 2 cut(s) | 191, 344 |
| BfuAI | ACCTGC | 2 cut(s) | 109, 449 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 302 |
| BisI | GCNGC | 6 cut(s) | 13, 102, 105, 139, 405, 408 |
| BlnI | CCTAGG | 1 cut(s) | 175 |
| BlsI | GCNGC | 6 cut(s) | 14, 103, 106, 140, 406, 409 |
| Bme1390I | CCNGG | 1 cut(s) | 365 |
| BmgT120I | GGNCC | 2 cut(s) | 295, 367 |
| BmrFI | CCNGG | 1 cut(s) | 365 |
| BmtI | GCTAGC | 1 cut(s) | 420 |
| BpuEI | CTTGAG | 2 cut(s) | 93, 291 |
| BsaJI | CCNNGG | 4 cut(s) | 99, 136, 175, 270 |
| Bse1I | ACTGG | 1 cut(s) | 306 |
| BseBI | CCWGG | 1 cut(s) | 365 |
| BseDI | CCNNGG | 4 cut(s) | 99, 136, 175, 270 |
| BseMII | CTCAG | 1 cut(s) | 197 |
| BseNI | ACTGG | 1 cut(s) | 306 |
| BsePI | GCGCGC | 1 cut(s) | 400 |
| BseX3I | CGGCCG | 1 cut(s) | 102 |
| BseXI | GCAGC | 2 cut(s) | 391, 394 |
| BsgI | GTGCAG | 1 cut(s) | 60 |
| Bsh1236I | CGCG | 6 cut(s) | 15, 101, 138, 168, 378, 402 |
| Bsh1285I | CGRYCG | 3 cut(s) | 99, 105, 184 |
| BshFI | GGCC | 5 cut(s) | 104, 141, 275, 296, 368 |
| BsiEI | CGRYCG | 3 cut(s) | 99, 105, 184 |
| BsiHKAI | GWGCWC | 1 cut(s) | 60 |
| BsmAI | GTCTC | 1 cut(s) | 360 |
| BsnI | GGCC | 5 cut(s) | 104, 141, 275, 296, 368 |
| Bsp1286I | GDGCHC | 2 cut(s) | 60, 318 |
| Bsp143I | GATC | 4 cut(s) | 81, 181, 202, 210 |
| Bsp68I | TCGCGA | 1 cut(s) | 168 |
| BspACI | CCGC | 6 cut(s) | 13, 99, 101, 105, 136, 138 |
| BspANI | GGCC | 5 cut(s) | 104, 141, 275, 296, 368 |
| BspCNI | CTCAG | 1 cut(s) | 198 |
| BspFNI | CGCG | 6 cut(s) | 15, 101, 138, 168, 378, 402 |
| BspMI | ACCTGC | 2 cut(s) | 109, 449 |
| BspOI | GCTAGC | 1 cut(s) | 420 |
| BspPI | GGATC | 3 cut(s) | 89, 210, 218 |
| BspQI | GCTCTTC | 1 cut(s) | 306 |
| BsrBI | CCGCTC | 1 cut(s) | 107 |
| BsrI | ACTGG | 1 cut(s) | 306 |
| BssECI | CCNNGG | 4 cut(s) | 99, 136, 175, 270 |
| BssHII | GCGCGC | 1 cut(s) | 400 |
| BssMI | GATC | 4 cut(s) | 81, 181, 202, 210 |
| BssT1I | CCWWGG | 2 cut(s) | 175, 270 |
| Bst2UI | CCWGG | 1 cut(s) | 365 |
| Bst4CI | ACNGT | 1 cut(s) | 289 |
| Bst6I | CTCTTC | 1 cut(s) | 306 |
| BstC8I | GCNNGC | 3 cut(s) | 376, 402, 418 |
| BstDEI | CTNAG | 1 cut(s) | 206 |
| BstDSI | CCRYGG | 2 cut(s) | 99, 136 |
| BstFNI | CGCG | 6 cut(s) | 15, 101, 138, 168, 378, 402 |
| BstH2I | RGCGCY | 2 cut(s) | 191, 344 |
| BstHHI | GCGC | 4 cut(s) | 190, 343, 402, 404 |
| BstKTI | GATC | 4 cut(s) | 84, 184, 205, 213 |
| BstMAI | GTCTC | 1 cut(s) | 360 |
| BstMBI | GATC | 4 cut(s) | 81, 181, 202, 210 |
| BstMCI | CGRYCG | 3 cut(s) | 99, 105, 184 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 152, 302, 347, 401, 413 |
| BstNI | CCWGG | 1 cut(s) | 365 |
| BstSCI | CCNGG | 1 cut(s) | 363 |
| BstUI | CGCG | 6 cut(s) | 15, 101, 138, 168, 378, 402 |
| BstV1I | GCAGC | 2 cut(s) | 391, 394 |
| BstX2I | RGATCY | 2 cut(s) | 202, 210 |
| BstYI | RGATCY | 2 cut(s) | 202, 210 |
| BstZI | CGGCCG | 1 cut(s) | 102 |
| BsuRI | GGCC | 5 cut(s) | 104, 141, 275, 296, 368 |
| BtgI | CCRYGG | 2 cut(s) | 99, 136 |
| BtgZI | GCGATG | 1 cut(s) | 365 |
| BtsIMutI | CAGTG | 1 cut(s) | 27 |
| BtuMI | TCGCGA | 1 cut(s) | 168 |
| BveI | ACCTGC | 2 cut(s) | 109, 449 |
| Cac8I | GCNNGC | 3 cut(s) | 376, 402, 418 |
| CciNI | GCGGCCGC | 1 cut(s) | 102 |
| CfoI | GCGC | 4 cut(s) | 190, 343, 402, 404 |
| Cfr13I | GGNCC | 2 cut(s) | 295, 367 |
| Cfr42I | CCGCGG | 2 cut(s) | 102, 139 |
| CseI | GACGC | 1 cut(s) | 422 |
| Csp6I | GTAC | 2 cut(s) | 5, 21 |
| CviAII | CATG | 1 cut(s) | 455 |
| CviQI | GTAC | 2 cut(s) | 5, 21 |
| DdeI | CTNAG | 1 cut(s) | 206 |
| DpnI | GATC | 4 cut(s) | 83, 183, 204, 212 |
| DpnII | GATC | 4 cut(s) | 81, 181, 202, 210 |
| EaeI | YGGCCR | 1 cut(s) | 102 |
| EagI | CGGCCG | 1 cut(s) | 102 |
| Eam1104I | CTCTTC | 1 cut(s) | 306 |
| EarI | CTCTTC | 1 cut(s) | 306 |
| Ecl136II | GAGCTC | 1 cut(s) | 58 |
| EclXI | CGGCCG | 1 cut(s) | 102 |
| Eco130I | CCWWGG | 2 cut(s) | 175, 270 |
| Eco24I | GRGCYC | 2 cut(s) | 60, 318 |
| Eco47III | AGCGCT | 1 cut(s) | 189 |
| Eco52I | CGGCCG | 1 cut(s) | 102 |
| Eco53kI | GAGCTC | 1 cut(s) | 58 |
| Eco57I | CTGAAG | 1 cut(s) | 51 |
| EcoICRI | GAGCTC | 1 cut(s) | 58 |
| EcoRII | CCWGG | 1 cut(s) | 363 |
| EcoT14I | CCWWGG | 2 cut(s) | 175, 270 |
| EcoT38I | GRGCYC | 2 cut(s) | 60, 318 |
| ErhI | CCWWGG | 2 cut(s) | 175, 270 |
| FaeI | CATG | 1 cut(s) | 458 |
| FaiI | YATR | 3 cut(s) | 52, 54, 456 |
| FatI | CATG | 1 cut(s) | 454 |
| Fnu4HI | GCNGC | 6 cut(s) | 13, 102, 105, 139, 405, 408 |
| FriOI | GRGCYC | 2 cut(s) | 60, 318 |
| Fsp4HI | GCNGC | 6 cut(s) | 13, 102, 105, 139, 405, 408 |
| FspBI | CTAG | 4 cut(s) | 176, 344, 417, 428 |
| GlaI | GCGC | 4 cut(s) | 189, 342, 401, 403 |
| GluI | GCNGC | 6 cut(s) | 13, 102, 105, 139, 405, 408 |
| HaeII | RGCGCY | 2 cut(s) | 191, 344 |
| HaeIII | GGCC | 5 cut(s) | 104, 141, 275, 296, 368 |
| HgaI | GACGC | 1 cut(s) | 422 |
| HhaI | GCGC | 4 cut(s) | 190, 343, 402, 404 |
| Hin1II | CATG | 1 cut(s) | 458 |
| Hin6I | GCGC | 4 cut(s) | 188, 341, 400, 402 |
| HinP1I | GCGC | 4 cut(s) | 188, 341, 400, 402 |
| HindIII | AAGCTT | 1 cut(s) | 467 |
| HinfI | GANTC | 2 cut(s) | 170, 232 |
| Hpy188I | TCNGA | 3 cut(s) | 207, 231, 450 |
| Hpy188III | TCNNGA | 4 cut(s) | 167, 242, 308, 428 |
| Hpy99I | CGWCG | 1 cut(s) | 416 |
| HpyCH4III | ACNGT | 1 cut(s) | 289 |
| HpyCH4IV | ACGT | 1 cut(s) | 19 |
| HpyCH4V | TGCA | 4 cut(s) | 64, 77, 146, 458 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 152, 302, 347, 401, 413 |
| HpyF3I | CTNAG | 1 cut(s) | 206 |
| HpySE526I | ACGT | 1 cut(s) | 19 |
| Hsp92II | CATG | 1 cut(s) | 458 |
| HspAI | GCGC | 4 cut(s) | 188, 341, 400, 402 |
| KspI | CCGCGG | 2 cut(s) | 102, 139 |
| Kzo9I | GATC | 4 cut(s) | 81, 181, 202, 210 |
| LguI | GCTCTTC | 1 cut(s) | 306 |
| Lsp1109I | GCAGC | 2 cut(s) | 391, 394 |
| MaeI | CTAG | 4 cut(s) | 176, 344, 417, 428 |
| MaeII | ACGT | 1 cut(s) | 19 |
| MaeIII | GTNAC | 2 cut(s) | 283, 289 |
| MalI | GATC | 4 cut(s) | 83, 183, 204, 212 |
| MbiI | CCGCTC | 1 cut(s) | 107 |
| MboI | GATC | 4 cut(s) | 81, 181, 202, 210 |
| MboII | GAAGA | 4 cut(s) | 44, 62, 218, 323 |
| MflI | RGATCY | 2 cut(s) | 202, 210 |
| MhlI | GDGCHC | 2 cut(s) | 60, 318 |
| MluCI | AATT | 2 cut(s) | 38, 278 |
| MlyI | GAGTC | 2 cut(s) | 164, 226 |
| MnlI | CCTC | 3 cut(s) | 151, 201, 257 |
| MroXI | GAANNNNTTC | 1 cut(s) | 384 |
| MseI | TTAA | 1 cut(s) | 335 |
| MspA1I | CMGCKG | 2 cut(s) | 101, 138 |
| MspR9I | CCNGG | 1 cut(s) | 365 |
| MvaI | CCWGG | 1 cut(s) | 365 |
| MvnI | CGCG | 6 cut(s) | 15, 101, 138, 168, 378, 402 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 152, 302, 347, 401, 413 |
| NdeII | GATC | 4 cut(s) | 81, 181, 202, 210 |
| NheI | GCTAGC | 1 cut(s) | 416 |
| NlaIII | CATG | 1 cut(s) | 458 |
| NmuCI | GTSAC | 2 cut(s) | 283, 289 |
| NotI | GCGGCCGC | 1 cut(s) | 102 |
| NruI | TCGCGA | 1 cut(s) | 168 |
| PauI | GCGCGC | 1 cut(s) | 400 |
| PciSI | GCTCTTC | 1 cut(s) | 306 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 16, 190 |
| PdmI | GAANNNNTTC | 1 cut(s) | 384 |
| PkrI | GCNGC | 6 cut(s) | 14, 103, 106, 140, 406, 409 |
| Ple19I | CGATCG | 1 cut(s) | 184 |
| PleI | GAGTC | 2 cut(s) | 164, 226 |
| PpsI | GAGTC | 2 cut(s) | 164, 226 |
| Psp124BI | GAGCTC | 1 cut(s) | 60 |
| Psp6I | CCWGG | 1 cut(s) | 363 |
| PspGI | CCWGG | 1 cut(s) | 363 |
| PspPI | GGNCC | 2 cut(s) | 295, 367 |
| PsuI | RGATCY | 2 cut(s) | 202, 210 |
| PteI | GCGCGC | 1 cut(s) | 400 |
| PvuI | CGATCG | 1 cut(s) | 184 |
| RruI | TCGCGA | 1 cut(s) | 168 |
| RsaI | GTAC | 2 cut(s) | 6, 22 |
| RsaNI | GTAC | 2 cut(s) | 5, 21 |
| SacI | GAGCTC | 1 cut(s) | 60 |
| SacII | CCGCGG | 2 cut(s) | 102, 139 |
| SapI | GCTCTTC | 1 cut(s) | 306 |
| SaqAI | TTAA | 1 cut(s) | 335 |
| SatI | GCNGC | 6 cut(s) | 13, 102, 105, 139, 405, 408 |
| Sau3AI | GATC | 4 cut(s) | 81, 181, 202, 210 |
| Sau96I | GGNCC | 2 cut(s) | 295, 367 |
| SchI | GAGTC | 2 cut(s) | 164, 226 |
| ScrFI | CCNGG | 1 cut(s) | 365 |
| SduI | GDGCHC | 2 cut(s) | 60, 318 |
| SetI | ASST | 9 cut(s) | 22, 60, 123, 162, 249, 366, 422, 463, 471 |
| Sfr303I | CCGCGG | 2 cut(s) | 102, 139 |
| SgrBI | CCGCGG | 2 cut(s) | 102, 139 |
| SmlI | CTYRAG | 2 cut(s) | 108, 306 |
| SmoI | CTYRAG | 2 cut(s) | 108, 306 |
| Sse9I | AATT | 2 cut(s) | 38, 278 |
| SsiI | CCGC | 6 cut(s) | 13, 99, 101, 105, 136, 138 |
| SspMI | CTAG | 4 cut(s) | 176, 344, 417, 428 |
| SstI | GAGCTC | 1 cut(s) | 60 |
| StyD4I | CCNGG | 1 cut(s) | 363 |
| StyI | CCWWGG | 2 cut(s) | 175, 270 |
| TaaI | ACNGT | 1 cut(s) | 289 |
| TaiI | ACGT | 1 cut(s) | 22 |
| TaqI | TCGA | 4 cut(s) | 184, 264, 388, 463 |
| TasI | AATT | 2 cut(s) | 38, 278 |
| TauI | GCSGC | 4 cut(s) | 15, 104, 107, 141 |
| Tru1I | TTAA | 1 cut(s) | 335 |
| Tru9I | TTAA | 1 cut(s) | 335 |
| TscAI | CASTG | 1 cut(s) | 34 |
| TseFI | GTSAC | 2 cut(s) | 283, 289 |
| TseI | GCWGC | 2 cut(s) | 404, 407 |
| Tsp45I | GTSAC | 2 cut(s) | 283, 289 |
| TspDTI | ATGAA | 1 cut(s) | 51 |
| TspGWI | ACGGA | 1 cut(s) | 94 |
| TspRI | CASTG | 1 cut(s) | 34 |
| XapI | RAATTY | 1 cut(s) | 38 |
| XbaI | TCTAGA | 1 cut(s) | 427 |
| XmaJI | CCTAGG | 1 cut(s) | 175 |
| XmnI | GAANNNNTTC | 1 cut(s) | 384 |
| XspI | CTAG | 4 cut(s) | 176, 344, 417, 428 |