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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 109, 213 |
| AccII | CGCG | 5 cut(s) | 15, 79, 101, 138, 168 |
| AciI | CCGC | 7 cut(s) | 13, 79, 99, 138, 155, 208, 395 |
| AclWI | GGATC | 1 cut(s) | 218 |
| AcuI | CTGAAG | 1 cut(s) | 233 |
| AcvI | CACGTG | 1 cut(s) | 377 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 394 |
| AgsI | TTSAA | 1 cut(s) | 242 |
| AluBI | AGCT | 7 cut(s) | 58, 113, 188, 247, 322, 368, 404 |
| AluI | AGCT | 7 cut(s) | 58, 113, 188, 247, 322, 368, 404 |
| Alw26I | GTCTC | 1 cut(s) | 360 |
| AlwI | GGATC | 1 cut(s) | 218 |
| AoxI | GGCC | 3 cut(s) | 139, 252, 294 |
| ApeKI | GCWGC | 3 cut(s) | 338, 404, 407 |
| AseI | ATTAAT | 1 cut(s) | 84 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 246 |
| AspLEI | GCGC | 1 cut(s) | 79 |
| AspS9I | GGNCC | 4 cut(s) | 202, 231, 253, 295 |
| AsuHPI | GGTGA | 1 cut(s) | 301 |
| AsuII | TTCGAA | 1 cut(s) | 345 |
| AvaII | GGWCC | 2 cut(s) | 202, 231 |
| BbrPI | CACGTG | 1 cut(s) | 377 |
| BbvCI | CCTCAGC | 1 cut(s) | 318 |
| BbvI | GCAGC | 3 cut(s) | 350, 391, 394 |
| BceAI | ACGGC | 1 cut(s) | 309 |
| BcoDI | GTCTC | 1 cut(s) | 360 |
| BfaI | CTAG | 5 cut(s) | 114, 323, 335, 417, 448 |
| BfuAI | ACCTGC | 2 cut(s) | 109, 213 |
| BisI | GCNGC | 5 cut(s) | 13, 139, 339, 405, 408 |
| BlsI | GCNGC | 5 cut(s) | 14, 140, 340, 406, 409 |
| Bme18I | GGWCC | 2 cut(s) | 202, 231 |
| BmgT120I | GGNCC | 4 cut(s) | 202, 231, 253, 295 |
| BmiI | GGNNCC | 3 cut(s) | 203, 233, 315 |
| BmrI | ACTGGG | 1 cut(s) | 271 |
| BmsI | GCATC | 1 cut(s) | 170 |
| BmuI | ACTGGG | 1 cut(s) | 271 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 177, 209 |
| Bpu10I | CCTNAGC | 1 cut(s) | 318 |
| Bpu14I | TTCGAA | 1 cut(s) | 345 |
| BpuEI | CTTGAG | 2 cut(s) | 323, 354 |
| BsaAI | YACGTR | 1 cut(s) | 377 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 54, 84 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 394 |
| Bse1I | ACTGG | 1 cut(s) | 277 |
| BseGI | GGATG | 1 cut(s) | 436 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 394 |
| BseMII | CTCAG | 4 cut(s) | 21, 27, 332, 371 |
| BseNI | ACTGG | 1 cut(s) | 277 |
| BseXI | GCAGC | 3 cut(s) | 350, 391, 394 |
| Bsh1236I | CGCG | 5 cut(s) | 15, 79, 101, 138, 168 |
| Bsh1285I | CGRYCG | 1 cut(s) | 99 |
| BshFI | GGCC | 3 cut(s) | 141, 254, 296 |
| BsiEI | CGRYCG | 1 cut(s) | 99 |
| BslFI | GGGAC | 1 cut(s) | 215 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 394 |
| BsmAI | GTCTC | 1 cut(s) | 360 |
| BsmFI | GGGAC | 1 cut(s) | 215 |
| BsnI | GGCC | 3 cut(s) | 141, 254, 296 |
| Bsp119I | TTCGAA | 1 cut(s) | 345 |
| Bsp143I | GATC | 2 cut(s) | 210, 261 |
| Bsp68I | TCGCGA | 1 cut(s) | 168 |
| BspACI | CCGC | 7 cut(s) | 13, 79, 99, 138, 155, 208, 395 |
| BspANI | GGCC | 3 cut(s) | 141, 254, 296 |
| BspCNI | CTCAG | 4 cut(s) | 22, 28, 331, 370 |
| BspFNI | CGCG | 5 cut(s) | 15, 79, 101, 138, 168 |
| BspLI | GGNNCC | 3 cut(s) | 203, 233, 315 |
| BspMI | ACCTGC | 2 cut(s) | 109, 213 |
| BspPI | GGATC | 1 cut(s) | 218 |
| BspQI | GCTCTTC | 1 cut(s) | 237 |
| BspT104I | TTCGAA | 1 cut(s) | 345 |
| BsrI | ACTGG | 1 cut(s) | 277 |
| BssMI | GATC | 2 cut(s) | 210, 261 |
| Bst4CI | ACNGT | 1 cut(s) | 106 |
| Bst6I | CTCTTC | 1 cut(s) | 237 |
| BstBAI | YACGTR | 1 cut(s) | 377 |
| BstBI | TTCGAA | 1 cut(s) | 345 |
| BstC8I | GCNNGC | 2 cut(s) | 111, 402 |
| BstDEI | CTNAG | 5 cut(s) | 30, 36, 318, 357, 364 |
| BstF5I | GGATG | 1 cut(s) | 436 |
| BstFNI | CGCG | 5 cut(s) | 15, 79, 101, 138, 168 |
| BstHHI | GCGC | 1 cut(s) | 79 |
| BstKTI | GATC | 2 cut(s) | 213, 264 |
| BstMAI | GTCTC | 1 cut(s) | 360 |
| BstMBI | GATC | 2 cut(s) | 210, 261 |
| BstMCI | CGRYCG | 1 cut(s) | 99 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 115, 152, 214, 347, 380, 401, 413 |
| BstUI | CGCG | 5 cut(s) | 15, 79, 101, 138, 168 |
| BstV1I | GCAGC | 3 cut(s) | 350, 391, 394 |
| BstX2I | RGATCY | 1 cut(s) | 210 |
| BstYI | RGATCY | 1 cut(s) | 210 |
| BsuRI | GGCC | 3 cut(s) | 141, 254, 296 |
| BtgZI | GCGATG | 1 cut(s) | 365 |
| BtsCI | GGATG | 1 cut(s) | 436 |
| BtsIMutI | CAGTG | 1 cut(s) | 27 |
| BtuMI | TCGCGA | 1 cut(s) | 168 |
| BveI | ACCTGC | 2 cut(s) | 109, 213 |
| Cac8I | GCNNGC | 2 cut(s) | 111, 402 |
| CfoI | GCGC | 1 cut(s) | 79 |
| Cfr13I | GGNCC | 4 cut(s) | 202, 231, 253, 295 |
| CseI | GACGC | 1 cut(s) | 422 |
| DdeI | CTNAG | 5 cut(s) | 30, 36, 318, 357, 364 |
| DpnI | GATC | 2 cut(s) | 212, 263 |
| DpnII | GATC | 2 cut(s) | 210, 261 |
| Eam1104I | CTCTTC | 1 cut(s) | 237 |
| EarI | CTCTTC | 1 cut(s) | 237 |
| EciI | GGCGGA | 1 cut(s) | 170 |
| Eco47I | GGWCC | 2 cut(s) | 202, 231 |
| Eco57I | CTGAAG | 1 cut(s) | 233 |
| Eco72I | CACGTG | 1 cut(s) | 377 |
| EcoO109I | RGGNCCY | 1 cut(s) | 202 |
| FaiI | YATR | 3 cut(s) | 52, 54, 219 |
| FaqI | GGGAC | 1 cut(s) | 215 |
| Fnu4HI | GCNGC | 5 cut(s) | 13, 139, 339, 405, 408 |
| FokI | GGATG | 1 cut(s) | 443 |
| Fsp4HI | GCNGC | 5 cut(s) | 13, 139, 339, 405, 408 |
| FspBI | CTAG | 5 cut(s) | 114, 323, 335, 417, 448 |
| GlaI | GCGC | 1 cut(s) | 78 |
| GluI | GCNGC | 5 cut(s) | 13, 139, 339, 405, 408 |
| HaeIII | GGCC | 3 cut(s) | 141, 254, 296 |
| HgaI | GACGC | 1 cut(s) | 422 |
| HhaI | GCGC | 1 cut(s) | 79 |
| Hin6I | GCGC | 1 cut(s) | 77 |
| HinP1I | GCGC | 1 cut(s) | 77 |
| HinfI | GANTC | 1 cut(s) | 170 |
| HphI | GGTGA | 1 cut(s) | 301 |
| Hpy188I | TCNGA | 2 cut(s) | 231, 360 |
| Hpy188III | TCNNGA | 3 cut(s) | 46, 167, 428 |
| Hpy99I | CGWCG | 1 cut(s) | 416 |
| HpyAV | CCTTC | 3 cut(s) | 11, 236, 352 |
| HpyCH4III | ACNGT | 1 cut(s) | 106 |
| HpyCH4IV | ACGT | 1 cut(s) | 376 |
| HpyCH4V | TGCA | 2 cut(s) | 109, 146 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 115, 152, 214, 347, 380, 401, 413 |
| HpyF3I | CTNAG | 5 cut(s) | 30, 36, 318, 357, 364 |
| HpySE526I | ACGT | 1 cut(s) | 376 |
| HspAI | GCGC | 1 cut(s) | 77 |
| Kzo9I | GATC | 2 cut(s) | 210, 261 |
| LguI | GCTCTTC | 1 cut(s) | 237 |
| LmnI | GCTCC | 1 cut(s) | 397 |
| LpnPI | CCDG | 9 cut(s) | 87, 104, 110, 137, 184, 218, 236, 290, 413 |
| Lsp1109I | GCAGC | 3 cut(s) | 350, 391, 394 |
| LweI | GCATC | 1 cut(s) | 170 |
| MaeI | CTAG | 5 cut(s) | 114, 323, 335, 417, 448 |
| MaeII | ACGT | 1 cut(s) | 376 |
| MaeIII | GTNAC | 1 cut(s) | 289 |
| MalI | GATC | 2 cut(s) | 212, 263 |
| MboI | GATC | 2 cut(s) | 210, 261 |
| MboII | GAAGA | 1 cut(s) | 254 |
| MfeI | CAATTG | 1 cut(s) | 257 |
| MflI | RGATCY | 1 cut(s) | 210 |
| MluCI | AATT | 1 cut(s) | 257 |
| MlyI | GAGTC | 1 cut(s) | 164 |
| MmeI | TCCRAC | 1 cut(s) | 412 |
| MnlI | CCTC | 3 cut(s) | 25, 304, 327 |
| MroXI | GAANNNNTTC | 1 cut(s) | 246 |
| MseI | TTAA | 1 cut(s) | 84 |
| MunI | CAATTG | 1 cut(s) | 257 |
| MvnI | CGCG | 5 cut(s) | 15, 79, 101, 138, 168 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 115, 152, 214, 347, 380, 401, 413 |
| NdeII | GATC | 2 cut(s) | 210, 261 |
| NlaIV | GGNNCC | 3 cut(s) | 203, 233, 315 |
| NmuCI | GTSAC | 1 cut(s) | 289 |
| NruI | TCGCGA | 1 cut(s) | 168 |
| NspV | TTCGAA | 1 cut(s) | 345 |
| PciSI | GCTCTTC | 1 cut(s) | 237 |
| PdmI | GAANNNNTTC | 1 cut(s) | 246 |
| PkrI | GCNGC | 5 cut(s) | 14, 140, 340, 406, 409 |
| PleI | GAGTC | 1 cut(s) | 164 |
| PmaCI | CACGTG | 1 cut(s) | 377 |
| PmlI | CACGTG | 1 cut(s) | 377 |
| PpsI | GAGTC | 1 cut(s) | 164 |
| Ppu21I | YACGTR | 1 cut(s) | 377 |
| PpuMI | RGGWCCY | 1 cut(s) | 202 |
| PshBI | ATTAAT | 1 cut(s) | 84 |
| Psp5II | RGGWCCY | 1 cut(s) | 202 |
| PspCI | CACGTG | 1 cut(s) | 377 |
| PspN4I | GGNNCC | 3 cut(s) | 203, 233, 315 |
| PspPI | GGNCC | 4 cut(s) | 202, 231, 253, 295 |
| PspPPI | RGGWCCY | 1 cut(s) | 202 |
| PsuI | RGATCY | 1 cut(s) | 210 |
| RruI | TCGCGA | 1 cut(s) | 168 |
| SapI | GCTCTTC | 1 cut(s) | 237 |
| SaqAI | TTAA | 1 cut(s) | 84 |
| SatI | GCNGC | 5 cut(s) | 13, 139, 339, 405, 408 |
| Sau3AI | GATC | 2 cut(s) | 210, 261 |
| Sau96I | GGNCC | 4 cut(s) | 202, 231, 253, 295 |
| SchI | GAGTC | 1 cut(s) | 164 |
| SfaNI | GCATC | 1 cut(s) | 170 |
| SfuI | TTCGAA | 1 cut(s) | 345 |
| SinI | GGWCC | 2 cut(s) | 202, 231 |
| SmlI | CTYRAG | 2 cut(s) | 302, 369 |
| SmoI | CTYRAG | 2 cut(s) | 302, 369 |
| Sse9I | AATT | 1 cut(s) | 257 |
| SsiI | CCGC | 7 cut(s) | 13, 79, 99, 138, 155, 208, 395 |
| SspMI | CTAG | 5 cut(s) | 114, 323, 335, 417, 448 |
| TaaI | ACNGT | 1 cut(s) | 106 |
| TaiI | ACGT | 1 cut(s) | 379 |
| TaqI | TCGA | 3 cut(s) | 45, 264, 345 |
| TasI | AATT | 1 cut(s) | 257 |
| TauI | GCSGC | 2 cut(s) | 15, 141 |
| Tru1I | TTAA | 1 cut(s) | 84 |
| Tru9I | TTAA | 1 cut(s) | 84 |
| TscAI | CASTG | 1 cut(s) | 34 |
| TseFI | GTSAC | 1 cut(s) | 289 |
| TseI | GCWGC | 3 cut(s) | 338, 404, 407 |
| Tsp45I | GTSAC | 1 cut(s) | 289 |
| TspDTI | ATGAA | 2 cut(s) | 102, 447 |
| TspRI | CASTG | 1 cut(s) | 34 |
| VpaK11BI | GGWCC | 2 cut(s) | 202, 231 |
| VspI | ATTAAT | 1 cut(s) | 84 |
| XmnI | GAANNNNTTC | 1 cut(s) | 246 |
| XspI | CTAG | 5 cut(s) | 114, 323, 335, 417, 448 |