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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 569 |
| AccB1I | GGYRCC | 1 cut(s) | 117 |
| AccI | GTMKAC | 1 cut(s) | 174 |
| AccII | CGCG | 4 cut(s) | 560, 584, 635, 637 |
| AclWI | GGATC | 2 cut(s) | 114, 400 |
| AcoI | YGGCCR | 3 cut(s) | 137, 480, 523 |
| AcyI | GRCGYC | 1 cut(s) | 118 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 20, 21, 212, 213, 287, 288, 515, 545, 618 |
| AgeI | ACCGGT | 1 cut(s) | 245 |
| AgsI | TTSAA | 3 cut(s) | 536, 594, 643 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 324 |
| AluBI | AGCT | 1 cut(s) | 363 |
| AluI | AGCT | 1 cut(s) | 363 |
| Alw21I | GWGCWC | 1 cut(s) | 365 |
| Alw26I | GTCTC | 2 cut(s) | 332, 339 |
| AlwI | GGATC | 2 cut(s) | 114, 400 |
| Ama87I | CYCGRG | 1 cut(s) | 569 |
| AoxI | GGCC | 6 cut(s) | 111, 137, 159, 264, 480, 523 |
| ApaI | GGGCCC | 1 cut(s) | 115 |
| AsiGI | ACCGGT | 1 cut(s) | 245 |
| AspLEI | GCGC | 4 cut(s) | 40, 120, 637, 639 |
| AspS9I | GGNCC | 4 cut(s) | 111, 112, 216, 264 |
| AsuC2I | CCSGG | 4 cut(s) | 115, 136, 465, 546 |
| AsuHPI | GGTGA | 2 cut(s) | 88, 479 |
| AvaI | CYCGRG | 1 cut(s) | 569 |
| AvaII | GGWCC | 1 cut(s) | 216 |
| BaeGI | GKGCMC | 2 cut(s) | 115, 510 |
| BanI | GGYRCC | 1 cut(s) | 117 |
| BanII | GRGCYC | 3 cut(s) | 115, 365, 567 |
| Bbv12I | GWGCWC | 1 cut(s) | 365 |
| BccI | CCATC | 6 cut(s) | 139, 175, 218, 281, 339, 515 |
| BceAI | ACGGC | 1 cut(s) | 29 |
| BcnI | CCSGG | 4 cut(s) | 115, 136, 465, 546 |
| BcoDI | GTCTC | 2 cut(s) | 332, 339 |
| BfoI | RGCGCY | 2 cut(s) | 41, 121 |
| BisI | GCNGC | 5 cut(s) | 11, 121, 149, 429, 542 |
| BlsI | GCNGC | 5 cut(s) | 12, 122, 150, 430, 543 |
| Bme1390I | CCNGG | 4 cut(s) | 115, 136, 465, 546 |
| Bme18I | GGWCC | 1 cut(s) | 216 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 324 |
| BmeT110I | CYCGRG | 1 cut(s) | 569 |
| BmgT120I | GGNCC | 4 cut(s) | 111, 112, 216, 264 |
| BmiI | GGNNCC | 7 cut(s) | 27, 113, 119, 217, 530, 564, 576 |
| BmrFI | CCNGG | 4 cut(s) | 115, 136, 465, 546 |
| BmsI | GCATC | 2 cut(s) | 41, 577 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 615, 647 |
| BpuMI | CCSGG | 4 cut(s) | 115, 136, 465, 546 |
| BsaHI | GRCGYC | 1 cut(s) | 118 |
| BsaI | GGTCTC | 1 cut(s) | 332 |
| BsaJI | CCNNGG | 7 cut(s) | 81, 156, 297, 388, 432, 545, 582 |
| BsaWI | WCCGGW | 2 cut(s) | 245, 618 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 62, 92 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 20, 21, 212, 213, 287, 288, 515, 545, 618 |
| Bse118I | RCCGGY | 1 cut(s) | 245 |
| Bse3DI | GCAATG | 1 cut(s) | 317 |
| BseDI | CCNNGG | 7 cut(s) | 81, 156, 297, 388, 432, 545, 582 |
| BseGI | GGATG | 4 cut(s) | 131, 167, 360, 592 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 20, 21, 212, 213, 287, 288, 515, 545, 618 |
| BseMI | GCAATG | 1 cut(s) | 317 |
| BsePI | GCGCGC | 1 cut(s) | 635 |
| BseRI | GAGGAG | 1 cut(s) | 70 |
| BseSI | GKGCMC | 2 cut(s) | 115, 510 |
| BseX3I | CGGCCG | 1 cut(s) | 137 |
| Bsh1236I | CGCG | 4 cut(s) | 560, 584, 635, 637 |
| Bsh1285I | CGRYCG | 3 cut(s) | 140, 250, 619 |
| BshFI | GGCC | 6 cut(s) | 113, 139, 161, 266, 482, 525 |
| BshNI | GGYRCC | 1 cut(s) | 117 |
| BshTI | ACCGGT | 1 cut(s) | 245 |
| BsiEI | CGRYCG | 3 cut(s) | 140, 250, 619 |
| BsiHKAI | GWGCWC | 1 cut(s) | 365 |
| BsiHKCI | CYCGRG | 1 cut(s) | 569 |
| BsiSI | CCGG | 9 cut(s) | 104, 115, 136, 246, 342, 464, 526, 545, 619 |
| BslFI | GGGAC | 2 cut(s) | 229, 384 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 20, 21, 212, 213, 287, 288, 515, 545, 618 |
| BsmAI | GTCTC | 2 cut(s) | 332, 339 |
| BsmFI | GGGAC | 2 cut(s) | 229, 384 |
| BsnI | GGCC | 6 cut(s) | 113, 139, 161, 266, 482, 525 |
| Bso31I | GGTCTC | 1 cut(s) | 332 |
| BsoBI | CYCGRG | 1 cut(s) | 569 |
| Bsp120I | GGGCCC | 1 cut(s) | 111 |
| Bsp1286I | GDGCHC | 4 cut(s) | 115, 365, 510, 567 |
| Bsp143I | GATC | 3 cut(s) | 106, 251, 392 |
| Bsp19I | CCATGG | 1 cut(s) | 156 |
| BspANI | GGCC | 6 cut(s) | 113, 139, 161, 266, 482, 525 |
| BspFNI | CGCG | 4 cut(s) | 560, 584, 635, 637 |
| BspLI | GGNNCC | 7 cut(s) | 27, 113, 119, 217, 530, 564, 576 |
| BspPI | GGATC | 2 cut(s) | 114, 400 |
| BspQI | GCTCTTC | 1 cut(s) | 370 |
| BspT107I | GGYRCC | 1 cut(s) | 117 |
| BspTNI | GGTCTC | 1 cut(s) | 332 |
| BsrDI | GCAATG | 1 cut(s) | 317 |
| BsrFI | RCCGGY | 1 cut(s) | 245 |
| BssAI | RCCGGY | 1 cut(s) | 245 |
| BssECI | CCNNGG | 7 cut(s) | 81, 156, 297, 388, 432, 545, 582 |
| BssHII | GCGCGC | 1 cut(s) | 635 |
| BssMI | GATC | 3 cut(s) | 106, 251, 392 |
| BssNI | GRCGYC | 1 cut(s) | 118 |
| BssT1I | CCWWGG | 2 cut(s) | 156, 297 |
| Bst4CI | ACNGT | 1 cut(s) | 445 |
| Bst6I | CTCTTC | 1 cut(s) | 370 |
| BstACI | GRCGYC | 1 cut(s) | 118 |
| BstC8I | GCNNGC | 6 cut(s) | 42, 237, 241, 603, 633, 637 |
| BstDSI | CCRYGG | 2 cut(s) | 156, 582 |
| BstF5I | GGATG | 4 cut(s) | 131, 167, 360, 592 |
| BstFNI | CGCG | 4 cut(s) | 560, 584, 635, 637 |
| BstH2I | RGCGCY | 2 cut(s) | 41, 121 |
| BstHHI | GCGC | 4 cut(s) | 40, 120, 637, 639 |
| BstKTI | GATC | 3 cut(s) | 109, 254, 395 |
| BstMAI | GTCTC | 2 cut(s) | 332, 339 |
| BstMBI | GATC | 3 cut(s) | 106, 251, 392 |
| BstMCI | CGRYCG | 3 cut(s) | 140, 250, 619 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 145, 581 |
| BstNSI | RCATGY | 1 cut(s) | 239 |
| BstSCI | CCNGG | 4 cut(s) | 113, 134, 463, 544 |
| BstSLI | GKGCMC | 2 cut(s) | 115, 510 |
| BstUI | CGCG | 4 cut(s) | 560, 584, 635, 637 |
| BstZI | CGGCCG | 1 cut(s) | 137 |
| BsuRI | GGCC | 6 cut(s) | 113, 139, 161, 266, 482, 525 |
| BtgI | CCRYGG | 2 cut(s) | 156, 582 |
| BtsCI | GGATG | 4 cut(s) | 131, 167, 360, 592 |
| Cac8I | GCNNGC | 6 cut(s) | 42, 237, 241, 603, 633, 637 |
| CfoI | GCGC | 4 cut(s) | 40, 120, 637, 639 |
| Cfr10I | RCCGGY | 1 cut(s) | 245 |
| Cfr13I | GGNCC | 4 cut(s) | 111, 112, 216, 264 |
| Cfr42I | CCGCGG | 1 cut(s) | 585 |
| CspAI | ACCGGT | 1 cut(s) | 245 |
| CviAII | CATG | 4 cut(s) | 100, 157, 236, 478 |
| DinI | GGCGCC | 1 cut(s) | 119 |
| DpnI | GATC | 3 cut(s) | 108, 253, 394 |
| DpnII | GATC | 3 cut(s) | 106, 251, 392 |
| DriI | GACNNNNNGTC | 1 cut(s) | 324 |
| EaeI | YGGCCR | 3 cut(s) | 137, 480, 523 |
| EagI | CGGCCG | 1 cut(s) | 137 |
| Eam1104I | CTCTTC | 1 cut(s) | 370 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 324 |
| EarI | CTCTTC | 1 cut(s) | 370 |
| EciI | GGCGGA | 1 cut(s) | 211 |
| Ecl136II | GAGCTC | 1 cut(s) | 363 |
| EclXI | CGGCCG | 1 cut(s) | 137 |
| Eco130I | CCWWGG | 2 cut(s) | 156, 297 |
| Eco24I | GRGCYC | 3 cut(s) | 115, 365, 567 |
| Eco31I | GGTCTC | 1 cut(s) | 332 |
| Eco47I | GGWCC | 1 cut(s) | 216 |
| Eco52I | CGGCCG | 1 cut(s) | 137 |
| Eco53kI | GAGCTC | 1 cut(s) | 363 |
| Eco88I | CYCGRG | 1 cut(s) | 569 |
| EcoICRI | GAGCTC | 1 cut(s) | 363 |
| EcoO109I | RGGNCCY | 1 cut(s) | 216 |
| EcoT14I | CCWWGG | 2 cut(s) | 156, 297 |
| EcoT38I | GRGCYC | 3 cut(s) | 115, 365, 567 |
| EgeI | GGCGCC | 1 cut(s) | 119 |
| EheI | GGCGCC | 1 cut(s) | 119 |
| ErhI | CCWWGG | 2 cut(s) | 156, 297 |
| FaeI | CATG | 4 cut(s) | 103, 160, 239, 481 |
| FaiI | YATR | 8 cut(s) | 17, 56, 101, 158, 237, 306, 479, 495 |
| FaqI | GGGAC | 2 cut(s) | 229, 384 |
| FatI | CATG | 4 cut(s) | 99, 156, 235, 477 |
| FauI | CCCGC | 3 cut(s) | 463, 606, 610 |
| FblI | GTMKAC | 1 cut(s) | 174 |
| Fnu4HI | GCNGC | 5 cut(s) | 11, 121, 149, 429, 542 |
| FokI | GGATG | 4 cut(s) | 118, 154, 367, 599 |
| FriOI | GRGCYC | 3 cut(s) | 115, 365, 567 |
| Fsp4HI | GCNGC | 5 cut(s) | 11, 121, 149, 429, 542 |
| GlaI | GCGC | 4 cut(s) | 39, 119, 636, 638 |
| GluI | GCNGC | 5 cut(s) | 11, 121, 149, 429, 542 |
| HaeII | RGCGCY | 2 cut(s) | 41, 121 |
| HaeIII | GGCC | 6 cut(s) | 113, 139, 161, 266, 482, 525 |
| HapII | CCGG | 9 cut(s) | 104, 115, 136, 246, 342, 464, 526, 545, 619 |
| HhaI | GCGC | 4 cut(s) | 40, 120, 637, 639 |
| Hin1I | GRCGYC | 1 cut(s) | 118 |
| Hin1II | CATG | 4 cut(s) | 103, 160, 239, 481 |
| Hin6I | GCGC | 4 cut(s) | 38, 118, 635, 637 |
| HinP1I | GCGC | 4 cut(s) | 38, 118, 635, 637 |
| HincII | GTYRAC | 1 cut(s) | 175 |
| HindII | GTYRAC | 1 cut(s) | 175 |
| HinfI | GANTC | 3 cut(s) | 86, 127, 198 |
| HpaII | CCGG | 9 cut(s) | 104, 115, 136, 246, 342, 464, 526, 545, 619 |
| HphI | GGTGA | 2 cut(s) | 88, 479 |
| Hpy166II | GTNNAC | 2 cut(s) | 175, 318 |
| Hpy188I | TCNGA | 2 cut(s) | 85, 616 |
| Hpy188III | TCNNGA | 4 cut(s) | 214, 369, 382, 448 |
| Hpy8I | GTNNAC | 2 cut(s) | 175, 318 |
| Hpy99I | CGWCG | 2 cut(s) | 176, 428 |
| HpyAV | CCTTC | 1 cut(s) | 509 |
| HpyCH4III | ACNGT | 1 cut(s) | 445 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 145, 581 |
| Hsp92I | GRCGYC | 1 cut(s) | 118 |
| Hsp92II | CATG | 4 cut(s) | 103, 160, 239, 481 |
| HspAI | GCGC | 4 cut(s) | 38, 118, 635, 637 |
| KasI | GGCGCC | 1 cut(s) | 117 |
| KspI | CCGCGG | 1 cut(s) | 585 |
| Kzo9I | GATC | 3 cut(s) | 106, 251, 392 |
| LguI | GCTCTTC | 1 cut(s) | 370 |
| LmnI | GCTCC | 5 cut(s) | 83, 283, 409, 562, 580 |
| LweI | GCATC | 2 cut(s) | 41, 577 |
| MaeIII | GTNAC | 1 cut(s) | 46 |
| MalI | GATC | 3 cut(s) | 108, 253, 394 |
| MboI | GATC | 3 cut(s) | 106, 251, 392 |
| MboII | GAAGA | 3 cut(s) | 246, 357, 524 |
| MhlI | GDGCHC | 4 cut(s) | 115, 365, 510, 567 |
| Mly113I | GGCGCC | 1 cut(s) | 118 |
| MlyI | GAGTC | 2 cut(s) | 80, 192 |
| MmeI | TCCRAC | 1 cut(s) | 639 |
| MspA1I | CMGCKG | 1 cut(s) | 584 |
| MspI | CCGG | 9 cut(s) | 104, 115, 136, 246, 342, 464, 526, 545, 619 |
| MspR9I | CCNGG | 4 cut(s) | 115, 136, 465, 546 |
| MvnI | CGCG | 4 cut(s) | 560, 584, 635, 637 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 145, 581 |
| NarI | GGCGCC | 1 cut(s) | 118 |
| NciI | CCSGG | 4 cut(s) | 115, 136, 465, 546 |
| NcoI | CCATGG | 1 cut(s) | 156 |
| NdeII | GATC | 3 cut(s) | 106, 251, 392 |
| NlaIII | CATG | 4 cut(s) | 103, 160, 239, 481 |
| NlaIV | GGNNCC | 7 cut(s) | 27, 113, 119, 217, 530, 564, 576 |
| NmeAIII | GCCGAG | 1 cut(s) | 457 |
| NmuCI | GTSAC | 1 cut(s) | 46 |
| NspI | RCATGY | 1 cut(s) | 239 |
| PaeI | GCATGC | 1 cut(s) | 239 |
| PaeR7I | CTCGAG | 1 cut(s) | 569 |
| PauI | GCGCGC | 1 cut(s) | 635 |
| PciSI | GCTCTTC | 1 cut(s) | 370 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 247, 429 |
| PfeI | GAWTC | 1 cut(s) | 127 |
| PinAI | ACCGGT | 1 cut(s) | 245 |
| PkrI | GCNGC | 5 cut(s) | 12, 122, 150, 430, 543 |
| PleI | GAGTC | 2 cut(s) | 80, 192 |
| PluTI | GGCGCC | 1 cut(s) | 121 |
| PpsI | GAGTC | 2 cut(s) | 80, 192 |
| PpuMI | RGGWCCY | 1 cut(s) | 216 |
| Psp124BI | GAGCTC | 1 cut(s) | 365 |
| Psp5II | RGGWCCY | 1 cut(s) | 216 |
| PspN4I | GGNNCC | 7 cut(s) | 27, 113, 119, 217, 530, 564, 576 |
| PspOMI | GGGCCC | 1 cut(s) | 111 |
| PspPI | GGNCC | 4 cut(s) | 111, 112, 216, 264 |
| PspPPI | RGGWCCY | 1 cut(s) | 216 |
| PspXI | VCTCGAGB | 1 cut(s) | 569 |
| PteI | GCGCGC | 1 cut(s) | 635 |
| SacI | GAGCTC | 1 cut(s) | 365 |
| SacII | CCGCGG | 1 cut(s) | 585 |
| SalI | GTCGAC | 1 cut(s) | 173 |
| SapI | GCTCTTC | 1 cut(s) | 370 |
| SatI | GCNGC | 5 cut(s) | 11, 121, 149, 429, 542 |
| Sau3AI | GATC | 3 cut(s) | 106, 251, 392 |
| Sau96I | GGNCC | 4 cut(s) | 111, 112, 216, 264 |
| SchI | GAGTC | 2 cut(s) | 80, 192 |
| ScrFI | CCNGG | 4 cut(s) | 115, 136, 465, 546 |
| SduI | GDGCHC | 4 cut(s) | 115, 365, 510, 567 |
| SetI | ASST | 7 cut(s) | 75, 221, 328, 365, 534, 610, 628 |
| SfaNI | GCATC | 2 cut(s) | 41, 577 |
| SfoI | GGCGCC | 1 cut(s) | 119 |
| Sfr274I | CTCGAG | 1 cut(s) | 569 |
| Sfr303I | CCGCGG | 1 cut(s) | 585 |
| SgrBI | CCGCGG | 1 cut(s) | 585 |
| SinI | GGWCC | 1 cut(s) | 216 |
| SlaI | CTCGAG | 1 cut(s) | 569 |
| SmlI | CTYRAG | 1 cut(s) | 569 |
| SmoI | CTYRAG | 1 cut(s) | 569 |
| SphI | GCATGC | 1 cut(s) | 239 |
| SspDI | GGCGCC | 1 cut(s) | 117 |
| SstI | GAGCTC | 1 cut(s) | 365 |
| StyD4I | CCNGG | 4 cut(s) | 113, 134, 463, 544 |
| StyI | CCWWGG | 2 cut(s) | 156, 297 |
| TaaI | ACNGT | 1 cut(s) | 445 |
| TaqI | TCGA | 6 cut(s) | 174, 250, 381, 395, 447, 570 |
| TauI | GCSGC | 5 cut(s) | 13, 123, 151, 431, 544 |
| TfiI | GAWTC | 1 cut(s) | 127 |
| TseFI | GTSAC | 1 cut(s) | 46 |
| Tsp45I | GTSAC | 1 cut(s) | 46 |
| TspDTI | ATGAA | 4 cut(s) | 43, 285, 429, 486 |
| TspGWI | ACGGA | 1 cut(s) | 160 |
| VpaK11BI | GGWCC | 1 cut(s) | 216 |
| XceI | RCATGY | 1 cut(s) | 239 |
| XhoI | CTCGAG | 1 cut(s) | 569 |
| XmiI | GTMKAC | 1 cut(s) | 174 |