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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 751, 807 |
| Acc65I | GGTACC | 1 cut(s) | 156 |
| AccB1I | GGYRCC | 2 cut(s) | 156, 559 |
| AccBSI | CCGCTC | 4 cut(s) | 351, 934, 1166, 1228 |
| AccII | CGCG | 5 cut(s) | 190, 536, 945, 1034, 1160 |
| AccIII | TCCGGA | 1 cut(s) | 792 |
| AclWI | GGATC | 2 cut(s) | 7, 1276 |
| AcoI | YGGCCR | 1 cut(s) | 234 |
| AcuI | CTGAAG | 2 cut(s) | 1256, 1277 |
| AcyI | GRCGYC | 1 cut(s) | 981 |
| AfaI | GTAC | 2 cut(s) | 158, 915 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 28, 53, 166, 316, 550, 632, 1180 |
| AgsI | TTSAA | 2 cut(s) | 146, 599 |
| AjiI | CACGTC | 1 cut(s) | 124 |
| AjnI | CCWGG | 8 cut(s) | 330, 371, 555, 923, 983, 1005, 1027, 1386 |
| AluBI | AGCT | 5 cut(s) | 513, 585, 788, 1046, 1249 |
| AluI | AGCT | 5 cut(s) | 513, 585, 788, 1046, 1249 |
| Alw21I | GWGCWC | 4 cut(s) | 129, 707, 951, 1048 |
| Alw26I | GTCTC | 4 cut(s) | 90, 1007, 1070, 1364 |
| AlwI | GGATC | 2 cut(s) | 7, 1276 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 866 |
| Aor13HI | TCCGGA | 1 cut(s) | 792 |
| AoxI | GGCC | 8 cut(s) | 234, 552, 939, 1009, 1170, 1182, 1230, 1296 |
| ApaI | GGGCCC | 1 cut(s) | 1013 |
| ApeKI | GCWGC | 5 cut(s) | 248, 345, 644, 1351, 1361 |
| AscI | GGCGCGCC | 1 cut(s) | 1032 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 993 |
| Asp718I | GGTACC | 1 cut(s) | 156 |
| AspA2I | CCTAGG | 2 cut(s) | 1133, 1219 |
| AspLEI | GCGC | 4 cut(s) | 192, 345, 1034, 1036 |
| AsuHPI | GGTGA | 4 cut(s) | 52, 479, 551, 1078 |
| AsuNHI | GCTAGC | 1 cut(s) | 647 |
| AvaII | GGWCC | 2 cut(s) | 449, 1126 |
| AvrII | CCTAGG | 2 cut(s) | 1133, 1219 |
| AxyI | CCTNAGG | 1 cut(s) | 198 |
| BaeGI | GKGCMC | 1 cut(s) | 1013 |
| BanI | GGYRCC | 2 cut(s) | 156, 559 |
| BanII | GRGCYC | 2 cut(s) | 1013, 1048 |
| BauI | CACGAG | 1 cut(s) | 1073 |
| BbsI | GAAGAC | 3 cut(s) | 312, 419, 986 |
| Bbv12I | GWGCWC | 4 cut(s) | 129, 707, 951, 1048 |
| BbvCI | CCTCAGC | 1 cut(s) | 882 |
| BbvI | GCAGC | 5 cut(s) | 235, 357, 631, 1363, 1373 |
| BccI | CCATC | 4 cut(s) | 47, 1091, 1182, 1327 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 230, 264, 740, 774 |
| BciT130I | CCWGG | 8 cut(s) | 332, 373, 557, 925, 985, 1007, 1029, 1388 |
| BciVI | GTATCC | 1 cut(s) | 1065 |
| BcoDI | GTCTC | 4 cut(s) | 90, 1007, 1070, 1364 |
| BfaI | CTAG | 9 cut(s) | 510, 575, 648, 683, 929, 1134, 1220, 1346, 1393 |
| BfmI | CTRYAG | 2 cut(s) | 420, 966 |
| BfuAI | ACCTGC | 2 cut(s) | 751, 807 |
| BfuI | GTATCC | 1 cut(s) | 1065 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 332 |
| BglII | AGATCT | 2 cut(s) | 416, 1288 |
| BlnI | CCTAGG | 2 cut(s) | 1133, 1219 |
| BmcAI | AGTACT | 1 cut(s) | 915 |
| Bme1390I | CCNGG | 8 cut(s) | 332, 373, 557, 925, 985, 1007, 1029, 1388 |
| Bme18I | GGWCC | 2 cut(s) | 449, 1126 |
| BmgBI | CACGTC | 1 cut(s) | 124 |
| BmiI | GGNNCC | 6 cut(s) | 158, 561, 741, 797, 876, 1011 |
| BmrFI | CCNGG | 8 cut(s) | 332, 373, 557, 925, 985, 1007, 1029, 1388 |
| BmrI | ACTGGG | 1 cut(s) | 1294 |
| BmsI | GCATC | 3 cut(s) | 712, 1192, 1327 |
| BmtI | GCTAGC | 1 cut(s) | 651 |
| BmuI | ACTGGG | 1 cut(s) | 1294 |
| BpiI | GAAGAC | 3 cut(s) | 312, 419, 986 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 158, 190, 1217, 1249 |
| BpmI | CTGGAG | 1 cut(s) | 1142 |
| Bpu10I | CCTNAGC | 2 cut(s) | 882, 1167 |
| BpuEI | CTTGAG | 3 cut(s) | 72, 795, 863 |
| BsaHI | GRCGYC | 1 cut(s) | 981 |
| BsaI | GGTCTC | 2 cut(s) | 90, 1070 |
| BsaWI | WCCGGW | 1 cut(s) | 792 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 28, 53, 166, 316, 550, 632, 1180 |
| Bse1I | ACTGG | 4 cut(s) | 83, 408, 563, 1300 |
| Bse21I | CCTNAGG | 1 cut(s) | 198 |
| BseAI | TCCGGA | 1 cut(s) | 792 |
| BseBI | CCWGG | 8 cut(s) | 332, 373, 557, 925, 985, 1007, 1029, 1388 |
| BseGI | GGATG | 5 cut(s) | 124, 208, 961, 1207, 1342 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 28, 53, 166, 316, 550, 632, 1180 |
| BseMII | CTCAG | 5 cut(s) | 189, 582, 873, 1109, 1181 |
| BseNI | ACTGG | 4 cut(s) | 83, 408, 563, 1300 |
| BsePI | GCGCGC | 1 cut(s) | 1032 |
| BseRI | GAGGAG | 3 cut(s) | 219, 469, 615 |
| BseSI | GKGCMC | 1 cut(s) | 1013 |
| BseXI | GCAGC | 5 cut(s) | 235, 357, 631, 1363, 1373 |
| BseYI | CCCAGC | 1 cut(s) | 517 |
| BsgI | GTGCAG | 1 cut(s) | 587 |
| Bsh1236I | CGCG | 5 cut(s) | 190, 536, 945, 1034, 1160 |
| Bsh1285I | CGRYCG | 2 cut(s) | 393, 1164 |
| BshFI | GGCC | 8 cut(s) | 236, 554, 941, 1011, 1172, 1184, 1232, 1298 |
| BshNI | GGYRCC | 2 cut(s) | 156, 559 |
| BsiEI | CGRYCG | 2 cut(s) | 393, 1164 |
| BsiHKAI | GWGCWC | 4 cut(s) | 129, 707, 951, 1048 |
| BsiSI | CCGG | 3 cut(s) | 233, 793, 1320 |
| BslFI | GGGAC | 1 cut(s) | 1261 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 28, 53, 166, 316, 550, 632, 1180 |
| BsmAI | GTCTC | 4 cut(s) | 90, 1007, 1070, 1364 |
| BsmBI | CGTCTC | 1 cut(s) | 1007 |
| BsmFI | GGGAC | 1 cut(s) | 1261 |
| BsmI | GAATGC | 1 cut(s) | 612 |
| BsnI | GGCC | 8 cut(s) | 236, 554, 941, 1011, 1172, 1184, 1232, 1298 |
| Bso31I | GGTCTC | 2 cut(s) | 90, 1070 |
| Bsp120I | GGGCCC | 1 cut(s) | 1009 |
| Bsp1286I | GDGCHC | 5 cut(s) | 129, 707, 951, 1013, 1048 |
| Bsp13I | TCCGGA | 1 cut(s) | 792 |
| Bsp143I | GATC | 7 cut(s) | 12, 241, 390, 397, 416, 1281, 1288 |
| Bsp19I | CCATGG | 1 cut(s) | 63 |
| BspANI | GGCC | 8 cut(s) | 236, 554, 941, 1011, 1172, 1184, 1232, 1298 |
| BspCNI | CTCAG | 5 cut(s) | 190, 583, 874, 1108, 1180 |
| BspEI | TCCGGA | 1 cut(s) | 792 |
| BspFNI | CGCG | 5 cut(s) | 190, 536, 945, 1034, 1160 |
| BspLI | GGNNCC | 6 cut(s) | 158, 561, 741, 797, 876, 1011 |
| BspMAI | CTGCAG | 1 cut(s) | 970 |
| BspMI | ACCTGC | 2 cut(s) | 751, 807 |
| BspOI | GCTAGC | 1 cut(s) | 651 |
| BspPI | GGATC | 2 cut(s) | 7, 1276 |
| BspQI | GCTCTTC | 2 cut(s) | 134, 592 |
| BspT107I | GGYRCC | 2 cut(s) | 156, 559 |
| BspTNI | GGTCTC | 2 cut(s) | 90, 1070 |
| BsrBI | CCGCTC | 4 cut(s) | 351, 934, 1166, 1228 |
| BsrI | ACTGG | 4 cut(s) | 83, 408, 563, 1300 |
| BssHII | GCGCGC | 1 cut(s) | 1032 |
| BssMI | GATC | 7 cut(s) | 12, 241, 390, 397, 416, 1281, 1288 |
| BssNI | GRCGYC | 1 cut(s) | 981 |
| BssSI | CACGAG | 1 cut(s) | 1073 |
| BssT1I | CCWWGG | 5 cut(s) | 63, 431, 1133, 1219, 1356 |
| Bst2BI | CACGAG | 1 cut(s) | 1073 |
| Bst2UI | CCWGG | 8 cut(s) | 332, 373, 557, 925, 985, 1007, 1029, 1388 |
| Bst4CI | ACNGT | 3 cut(s) | 453, 502, 709 |
| Bst6I | CTCTTC | 2 cut(s) | 134, 592 |
| BstACI | GRCGYC | 1 cut(s) | 981 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 644 |
| BstDEI | CTNAG | 6 cut(s) | 198, 591, 882, 1095, 1167, 1241 |
| BstDSI | CCRYGG | 2 cut(s) | 63, 534 |
| BstEII | GGTNACC | 1 cut(s) | 539 |
| BstF5I | GGATG | 5 cut(s) | 124, 208, 961, 1207, 1342 |
| BstFNI | CGCG | 5 cut(s) | 190, 536, 945, 1034, 1160 |
| BstHHI | GCGC | 4 cut(s) | 192, 345, 1034, 1036 |
| BstKTI | GATC | 7 cut(s) | 15, 244, 393, 400, 419, 1284, 1291 |
| BstMAI | GTCTC | 4 cut(s) | 90, 1007, 1070, 1364 |
| BstMBI | GATC | 7 cut(s) | 12, 241, 390, 397, 416, 1281, 1288 |
| BstMCI | CGRYCG | 2 cut(s) | 393, 1164 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 332, 345, 644, 711, 767, 934, 1163, 1316 |
| BstNI | CCWGG | 8 cut(s) | 332, 373, 557, 925, 985, 1007, 1029, 1388 |
| BstNSI | RCATGY | 1 cut(s) | 806 |
| BstPI | GGTNACC | 1 cut(s) | 539 |
| BstSCI | CCNGG | 8 cut(s) | 330, 371, 555, 923, 983, 1005, 1027, 1386 |
| BstSFI | CTRYAG | 2 cut(s) | 420, 966 |
| BstSLI | GKGCMC | 1 cut(s) | 1013 |
| BstUI | CGCG | 5 cut(s) | 190, 536, 945, 1034, 1160 |
| BstV1I | GCAGC | 5 cut(s) | 235, 357, 631, 1363, 1373 |
| BstV2I | GAAGAC | 3 cut(s) | 312, 419, 986 |
| BstX2I | RGATCY | 3 cut(s) | 416, 1281, 1288 |
| BstYI | RGATCY | 3 cut(s) | 416, 1281, 1288 |
| Bsu36I | CCTNAGG | 1 cut(s) | 198 |
| BsuI | GTATCC | 1 cut(s) | 1065 |
| BsuRI | GGCC | 8 cut(s) | 236, 554, 941, 1011, 1172, 1184, 1232, 1298 |
| BtgI | CCRYGG | 2 cut(s) | 63, 534 |
| BtrI | CACGTC | 1 cut(s) | 124 |
| BtsCI | GGATG | 5 cut(s) | 124, 208, 961, 1207, 1342 |
| BtsIMutI | CAGTG | 4 cut(s) | 76, 535, 570, 705 |
| BveI | ACCTGC | 2 cut(s) | 751, 807 |
| CaiI | CAGNNNCTG | 1 cut(s) | 866 |
| CfoI | GCGC | 4 cut(s) | 192, 345, 1034, 1036 |
| Cfr42I | CCGCGG | 1 cut(s) | 537 |
| CseI | GACGC | 2 cut(s) | 989, 1261 |
| Csp6I | GTAC | 2 cut(s) | 157, 914 |
| CviAII | CATG | 2 cut(s) | 64, 803 |
| CviQI | GTAC | 2 cut(s) | 157, 914 |
| DdeI | CTNAG | 6 cut(s) | 198, 591, 882, 1095, 1167, 1241 |
| DpnI | GATC | 7 cut(s) | 14, 243, 392, 399, 418, 1283, 1290 |
| DpnII | GATC | 7 cut(s) | 12, 241, 390, 397, 416, 1281, 1288 |
| EaeI | YGGCCR | 1 cut(s) | 234 |
| Eam1104I | CTCTTC | 2 cut(s) | 134, 592 |
| EarI | CTCTTC | 2 cut(s) | 134, 592 |
| EciI | GGCGGA | 1 cut(s) | 701 |
| Ecl136II | GAGCTC | 1 cut(s) | 1046 |
| Eco130I | CCWWGG | 5 cut(s) | 63, 431, 1133, 1219, 1356 |
| Eco24I | GRGCYC | 2 cut(s) | 1013, 1048 |
| Eco31I | GGTCTC | 2 cut(s) | 90, 1070 |
| Eco47I | GGWCC | 2 cut(s) | 449, 1126 |
| Eco53kI | GAGCTC | 1 cut(s) | 1046 |
| Eco57I | CTGAAG | 2 cut(s) | 1256, 1277 |
| Eco81I | CCTNAGG | 1 cut(s) | 198 |
| Eco91I | GGTNACC | 1 cut(s) | 539 |
| EcoICRI | GAGCTC | 1 cut(s) | 1046 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1010, 1126, 1183 |
| EcoO65I | GGTNACC | 1 cut(s) | 539 |
| EcoRII | CCWGG | 8 cut(s) | 330, 371, 555, 923, 983, 1005, 1027, 1386 |
| EcoT14I | CCWWGG | 5 cut(s) | 63, 431, 1133, 1219, 1356 |
| EcoT38I | GRGCYC | 2 cut(s) | 1013, 1048 |
| ErhI | CCWWGG | 5 cut(s) | 63, 431, 1133, 1219, 1356 |
| Esp3I | CGTCTC | 1 cut(s) | 1007 |
| FaeI | CATG | 2 cut(s) | 67, 806 |
| FaiI | YATR | 3 cut(s) | 65, 804, 1019 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 825, 857 |
| FaqI | GGGAC | 1 cut(s) | 1261 |
| FatI | CATG | 2 cut(s) | 63, 802 |
| FauI | CCCGC | 3 cut(s) | 529, 950, 1221 |
| FokI | GGATG | 5 cut(s) | 131, 215, 948, 1214, 1349 |
| FriOI | GRGCYC | 2 cut(s) | 1013, 1048 |
| FspBI | CTAG | 9 cut(s) | 510, 575, 648, 683, 929, 1134, 1220, 1346, 1393 |
| GlaI | GCGC | 4 cut(s) | 191, 344, 1033, 1035 |
| GsaI | CCCAGC | 1 cut(s) | 521 |
| GsuI | CTGGAG | 1 cut(s) | 1142 |
| HaeIII | GGCC | 8 cut(s) | 236, 554, 941, 1011, 1172, 1184, 1232, 1298 |
| HapII | CCGG | 3 cut(s) | 233, 793, 1320 |
| HgaI | GACGC | 2 cut(s) | 989, 1261 |
| HhaI | GCGC | 4 cut(s) | 192, 345, 1034, 1036 |
| Hin1I | GRCGYC | 1 cut(s) | 981 |
| Hin1II | CATG | 2 cut(s) | 67, 806 |
| Hin6I | GCGC | 4 cut(s) | 190, 343, 1032, 1034 |
| HinP1I | GCGC | 4 cut(s) | 190, 343, 1032, 1034 |
| HincII | GTYRAC | 4 cut(s) | 100, 172, 223, 1305 |
| HindII | GTYRAC | 4 cut(s) | 100, 172, 223, 1305 |
| HinfI | GANTC | 7 cut(s) | 57, 173, 290, 571, 620, 674, 958 |
| HpaI | GTTAAC | 1 cut(s) | 223 |
| HpaII | CCGG | 3 cut(s) | 233, 793, 1320 |
| HphI | GGTGA | 4 cut(s) | 52, 479, 551, 1078 |
| Hpy166II | GTNNAC | 4 cut(s) | 100, 172, 223, 1305 |
| Hpy188I | TCNGA | 7 cut(s) | 12, 178, 355, 592, 702, 1332, 1369 |
| Hpy188III | TCNNGA | 8 cut(s) | 133, 146, 575, 617, 683, 793, 842, 1073 |
| Hpy8I | GTNNAC | 4 cut(s) | 100, 172, 223, 1305 |
| Hpy99I | CGWCG | 1 cut(s) | 1002 |
| HpyAV | CCTTC | 5 cut(s) | 253, 440, 930, 983, 1280 |
| HpyCH4III | ACNGT | 3 cut(s) | 453, 502, 709 |
| HpyCH4IV | ACGT | 2 cut(s) | 123, 473 |
| HpyCH4V | TGCA | 5 cut(s) | 339, 568, 802, 853, 968 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 332, 345, 644, 711, 767, 934, 1163, 1316 |
| HpyF3I | CTNAG | 6 cut(s) | 198, 591, 882, 1095, 1167, 1241 |
| HpySE526I | ACGT | 2 cut(s) | 123, 473 |
| Hsp92I | GRCGYC | 1 cut(s) | 981 |
| Hsp92II | CATG | 2 cut(s) | 67, 806 |
| HspAI | GCGC | 4 cut(s) | 190, 343, 1032, 1034 |
| Kpn2I | TCCGGA | 1 cut(s) | 792 |
| KpnI | GGTACC | 1 cut(s) | 160 |
| KspAI | GTTAAC | 1 cut(s) | 223 |
| KspI | CCGCGG | 1 cut(s) | 537 |
| Kzo9I | GATC | 7 cut(s) | 12, 241, 390, 397, 416, 1281, 1288 |
| LguI | GCTCTTC | 2 cut(s) | 134, 592 |
| LmnI | GCTCC | 6 cut(s) | 356, 518, 658, 874, 907, 1246 |
| Lsp1109I | GCAGC | 5 cut(s) | 235, 357, 631, 1363, 1373 |
| LweI | GCATC | 3 cut(s) | 712, 1192, 1327 |
| MaeI | CTAG | 9 cut(s) | 510, 575, 648, 683, 929, 1134, 1220, 1346, 1393 |
| MaeII | ACGT | 2 cut(s) | 123, 473 |
| MaeIII | GTNAC | 4 cut(s) | 58, 502, 539, 955 |
| MalI | GATC | 7 cut(s) | 14, 243, 392, 399, 418, 1283, 1290 |
| MbiI | CCGCTC | 4 cut(s) | 351, 934, 1166, 1228 |
| MboI | GATC | 7 cut(s) | 12, 241, 390, 397, 416, 1281, 1288 |
| MfeI | CAATTG | 1 cut(s) | 25 |
| MflI | RGATCY | 3 cut(s) | 416, 1281, 1288 |
| MhlI | GDGCHC | 5 cut(s) | 129, 707, 951, 1013, 1048 |
| MluCI | AATT | 3 cut(s) | 25, 39, 1323 |
| MlyI | GAGTC | 4 cut(s) | 66, 167, 614, 952 |
| MmeI | TCCRAC | 1 cut(s) | 378 |
| MroI | TCCGGA | 1 cut(s) | 792 |
| MroXI | GAANNNNTTC | 1 cut(s) | 993 |
| MseI | TTAA | 1 cut(s) | 222 |
| MspA1I | CMGCKG | 4 cut(s) | 461, 536, 644, 770 |
| MspI | CCGG | 3 cut(s) | 233, 793, 1320 |
| MspR9I | CCNGG | 8 cut(s) | 332, 373, 557, 925, 985, 1007, 1029, 1388 |
| MunI | CAATTG | 1 cut(s) | 25 |
| Mva1269I | GAATGC | 1 cut(s) | 612 |
| MvaI | CCWGG | 8 cut(s) | 332, 373, 557, 925, 985, 1007, 1029, 1388 |
| MvnI | CGCG | 5 cut(s) | 190, 536, 945, 1034, 1160 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 332, 345, 644, 711, 767, 934, 1163, 1316 |
| NcoI | CCATGG | 1 cut(s) | 63 |
| NdeII | GATC | 7 cut(s) | 12, 241, 390, 397, 416, 1281, 1288 |
| NheI | GCTAGC | 1 cut(s) | 647 |
| NlaIII | CATG | 2 cut(s) | 67, 806 |
| NlaIV | GGNNCC | 6 cut(s) | 158, 561, 741, 797, 876, 1011 |
| NmuCI | GTSAC | 4 cut(s) | 58, 502, 539, 955 |
| NspI | RCATGY | 1 cut(s) | 806 |
| PaeI | GCATGC | 1 cut(s) | 806 |
| PalAI | GGCGCGCC | 1 cut(s) | 1032 |
| PasI | CCCWGGG | 1 cut(s) | 372 |
| PauI | GCGCGC | 1 cut(s) | 1032 |
| PciSI | GCTCTTC | 2 cut(s) | 134, 592 |
| PctI | GAATGC | 1 cut(s) | 612 |
| PdmI | GAANNNNTTC | 1 cut(s) | 993 |
| PfeI | GAWTC | 3 cut(s) | 290, 571, 674 |
| Ple19I | CGATCG | 1 cut(s) | 393 |
| PleI | GAGTC | 4 cut(s) | 65, 167, 614, 952 |
| PpsI | GAGTC | 4 cut(s) | 65, 167, 614, 952 |
| PpuMI | RGGWCCY | 1 cut(s) | 1126 |
| Psp124BI | GAGCTC | 1 cut(s) | 1048 |
| Psp5II | RGGWCCY | 1 cut(s) | 1126 |
| Psp6I | CCWGG | 8 cut(s) | 330, 371, 555, 923, 983, 1005, 1027, 1386 |
| PspEI | GGTNACC | 1 cut(s) | 539 |
| PspFI | CCCAGC | 1 cut(s) | 517 |
| PspGI | CCWGG | 8 cut(s) | 330, 371, 555, 923, 983, 1005, 1027, 1386 |
| PspN4I | GGNNCC | 6 cut(s) | 158, 561, 741, 797, 876, 1011 |
| PspOMI | GGGCCC | 1 cut(s) | 1009 |
| PspPPI | RGGWCCY | 1 cut(s) | 1126 |
| PstI | CTGCAG | 1 cut(s) | 970 |
| PstNI | CAGNNNCTG | 1 cut(s) | 866 |
| PsuI | RGATCY | 3 cut(s) | 416, 1281, 1288 |
| PteI | GCGCGC | 1 cut(s) | 1032 |
| PvuI | CGATCG | 1 cut(s) | 393 |
| RsaI | GTAC | 2 cut(s) | 158, 915 |
| RsaNI | GTAC | 2 cut(s) | 157, 914 |
| SacI | GAGCTC | 1 cut(s) | 1048 |
| SacII | CCGCGG | 1 cut(s) | 537 |
| SapI | GCTCTTC | 2 cut(s) | 134, 592 |
| SaqAI | TTAA | 1 cut(s) | 222 |
| Sau3AI | GATC | 7 cut(s) | 12, 241, 390, 397, 416, 1281, 1288 |
| ScaI | AGTACT | 1 cut(s) | 915 |
| SchI | GAGTC | 4 cut(s) | 66, 167, 614, 952 |
| ScrFI | CCNGG | 8 cut(s) | 332, 373, 557, 925, 985, 1007, 1029, 1388 |
| SduI | GDGCHC | 5 cut(s) | 129, 707, 951, 1013, 1048 |
| SfaNI | GCATC | 3 cut(s) | 712, 1192, 1327 |
| SfcI | CTRYAG | 2 cut(s) | 420, 966 |
| Sfr303I | CCGCGG | 1 cut(s) | 537 |
| SgrBI | CCGCGG | 1 cut(s) | 537 |
| SgsI | GGCGCGCC | 1 cut(s) | 1032 |
| SinI | GGWCC | 2 cut(s) | 449, 1126 |
| SmlI | CTYRAG | 3 cut(s) | 87, 810, 842 |
| SmoI | CTYRAG | 3 cut(s) | 87, 810, 842 |
| SphI | GCATGC | 1 cut(s) | 806 |
| Sse9I | AATT | 3 cut(s) | 25, 39, 1323 |
| SspMI | CTAG | 9 cut(s) | 510, 575, 648, 683, 929, 1134, 1220, 1346, 1393 |
| SstI | GAGCTC | 1 cut(s) | 1048 |
| StyD4I | CCNGG | 8 cut(s) | 330, 371, 555, 923, 983, 1005, 1027, 1386 |
| StyI | CCWWGG | 5 cut(s) | 63, 431, 1133, 1219, 1356 |
| TaaI | ACNGT | 3 cut(s) | 453, 502, 709 |
| TaiI | ACGT | 2 cut(s) | 126, 476 |
| TaqI | TCGA | 4 cut(s) | 285, 400, 819, 951 |
| TasI | AATT | 3 cut(s) | 25, 39, 1323 |
| TatI | WGTACW | 1 cut(s) | 913 |
| TauI | GCSGC | 8 cut(s) | 326, 329, 351, 536, 613, 728, 937, 1160 |
| TfiI | GAWTC | 3 cut(s) | 290, 571, 674 |
| Tru1I | TTAA | 1 cut(s) | 222 |
| Tru9I | TTAA | 1 cut(s) | 222 |
| TscAI | CASTG | 4 cut(s) | 83, 535, 570, 712 |
| TseFI | GTSAC | 4 cut(s) | 58, 502, 539, 955 |
| TseI | GCWGC | 5 cut(s) | 248, 345, 644, 1351, 1361 |
| Tsp45I | GTSAC | 4 cut(s) | 58, 502, 539, 955 |
| TspDTI | ATGAA | 5 cut(s) | 51, 219, 318, 399, 1058 |
| TspRI | CASTG | 4 cut(s) | 83, 535, 570, 712 |
| VpaK11BI | GGWCC | 2 cut(s) | 449, 1126 |
| XbaI | TCTAGA | 2 cut(s) | 574, 682 |
| XceI | RCATGY | 1 cut(s) | 806 |
| XmaJI | CCTAGG | 2 cut(s) | 1133, 1219 |
| XmnI | GAANNNNTTC | 1 cut(s) | 993 |
| XspI | CTAG | 9 cut(s) | 510, 575, 648, 683, 929, 1134, 1220, 1346, 1393 |
| ZrmI | AGTACT | 1 cut(s) | 915 |