Plant mobile domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1140 |
| Acc16I | TGCGCA | 1 cut(s) | 273 |
| AccB1I | GGYRCC | 2 cut(s) | 83, 746 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1523 |
| AclWI | GGATC | 2 cut(s) | 826, 839 |
| AcoI | YGGCCR | 5 cut(s) | 302, 499, 574, 619, 712 |
| AcsI | RAATTY | 1 cut(s) | 837 |
| AcyI | GRCGYC | 1 cut(s) | 747 |
| AdeI | CACNNNGTG | 1 cut(s) | 1093 |
| AfaI | GTAC | 3 cut(s) | 570, 629, 929 |
| AgsI | TTSAA | 1 cut(s) | 1571 |
| AhlI | ACTAGT | 1 cut(s) | 260 |
| AjnI | CCWGG | 2 cut(s) | 180, 1232 |
| AluBI | AGCT | 4 cut(s) | 887, 1144, 1476, 1547 |
| AluI | AGCT | 4 cut(s) | 887, 1144, 1476, 1547 |
| Alw21I | GWGCWC | 1 cut(s) | 355 |
| Alw26I | GTCTC | 2 cut(s) | 1205, 1381 |
| AlwI | GGATC | 2 cut(s) | 826, 839 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1523, 1628 |
| Ama87I | CYCGRG | 3 cut(s) | 1046, 1175, 1460 |
| ApeKI | GCWGC | 2 cut(s) | 915, 1532 |
| ApoI | RAATTY | 1 cut(s) | 837 |
| AseI | ATTAAT | 1 cut(s) | 1005 |
| AsiSI | GCGATCGC | 1 cut(s) | 908 |
| AspLEI | GCGC | 6 cut(s) | 274, 349, 423, 749, 1077, 1153 |
| AspS9I | GGNCC | 8 cut(s) | 158, 677, 700, 1247, 1259, 1308, 1335, 1464 |
| AsuC2I | CCSGG | 4 cut(s) | 1047, 1048, 1461, 1462 |
| AsuHPI | GGTGA | 5 cut(s) | 156, 307, 569, 583, 1079 |
| AsuII | TTCGAA | 2 cut(s) | 789, 1341 |
| AvaI | CYCGRG | 3 cut(s) | 1046, 1175, 1460 |
| AvaII | GGWCC | 5 cut(s) | 158, 677, 1247, 1335, 1464 |
| BaeGI | GKGCMC | 1 cut(s) | 88 |
| BalI | TGGCCA | 2 cut(s) | 304, 576 |
| BamHI | GGATCC | 1 cut(s) | 831 |
| BanI | GGYRCC | 2 cut(s) | 83, 746 |
| BanII | GRGCYC | 2 cut(s) | 564, 1563 |
| BbsI | GAAGAC | 1 cut(s) | 1578 |
| Bbv12I | GWGCWC | 1 cut(s) | 355 |
| BbvI | GCAGC | 2 cut(s) | 902, 1519 |
| BccI | CCATC | 5 cut(s) | 113, 185, 548, 1325, 1424 |
| BceAI | ACGGC | 5 cut(s) | 220, 393, 606, 714, 727 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 894, 928 |
| BciT130I | CCWGG | 2 cut(s) | 182, 1234 |
| BclI | TGATCA | 1 cut(s) | 1351 |
| BcnI | CCSGG | 4 cut(s) | 1047, 1048, 1461, 1462 |
| BcoDI | GTCTC | 2 cut(s) | 1205, 1381 |
| BcuI | ACTAGT | 1 cut(s) | 260 |
| BfaI | CTAG | 2 cut(s) | 261, 356 |
| BfmI | CTRYAG | 1 cut(s) | 1548 |
| BfoI | RGCGCY | 1 cut(s) | 750 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 507 |
| BglII | AGATCT | 2 cut(s) | 358, 1426 |
| BisI | GCNGC | 6 cut(s) | 57, 859, 916, 986, 1122, 1533 |
| BlsI | GCNGC | 6 cut(s) | 58, 860, 917, 987, 1123, 1534 |
| BmcAI | AGTACT | 1 cut(s) | 629 |
| Bme1390I | CCNGG | 6 cut(s) | 182, 1047, 1048, 1234, 1461, 1462 |
| Bme18I | GGWCC | 5 cut(s) | 158, 677, 1247, 1335, 1464 |
| BmeT110I | CYCGRG | 3 cut(s) | 1046, 1175, 1460 |
| BmgT120I | GGNCC | 8 cut(s) | 158, 677, 700, 1247, 1259, 1308, 1335, 1464 |
| BmrFI | CCNGG | 6 cut(s) | 182, 1047, 1048, 1234, 1461, 1462 |
| BmrI | ACTGGG | 2 cut(s) | 164, 549 |
| BmsI | GCATC | 3 cut(s) | 283, 519, 790 |
| BmuI | ACTGGG | 2 cut(s) | 164, 549 |
| BpiI | GAAGAC | 1 cut(s) | 1578 |
| BpmI | CTGGAG | 3 cut(s) | 867, 1405, 1500 |
| Bpu14I | TTCGAA | 2 cut(s) | 789, 1341 |
| BpuEI | CTTGAG | 2 cut(s) | 1049, 1456 |
| BpuMI | CCSGG | 4 cut(s) | 1047, 1048, 1461, 1462 |
| BsaBI | GATNNNNATC | 2 cut(s) | 23, 1350 |
| BsaHI | GRCGYC | 1 cut(s) | 747 |
| BsaJI | CCNNGG | 6 cut(s) | 318, 680, 948, 1046, 1047, 1460 |
| BsaWI | WCCGGW | 1 cut(s) | 248 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 108, 138, 1214, 1244 |
| Bse118I | RCCGGY | 1 cut(s) | 617 |
| Bse1I | ACTGG | 6 cut(s) | 75, 159, 544, 635, 679, 1528 |
| Bse8I | GATNNNNATC | 2 cut(s) | 23, 1350 |
| BseBI | CCWGG | 2 cut(s) | 182, 1234 |
| BseDI | CCNNGG | 6 cut(s) | 318, 680, 948, 1046, 1047, 1460 |
| BseGI | GGATG | 8 cut(s) | 7, 96, 108, 177, 525, 781, 932, 1402 |
| BseJI | GATNNNNATC | 2 cut(s) | 23, 1350 |
| BseMII | CTCAG | 5 cut(s) | 250, 816, 1119, 1147, 1620 |
| BseNI | ACTGG | 6 cut(s) | 75, 159, 544, 635, 679, 1528 |
| BseRI | GAGGAG | 1 cut(s) | 1503 |
| BseSI | GKGCMC | 1 cut(s) | 88 |
| BseX3I | CGGCCG | 1 cut(s) | 619 |
| BseXI | GCAGC | 2 cut(s) | 902, 1519 |
| BseYI | CCCAGC | 1 cut(s) | 369 |
| BsgI | GTGCAG | 1 cut(s) | 637 |
| Bsh1285I | CGRYCG | 3 cut(s) | 249, 622, 908 |
| BshNI | GGYRCC | 2 cut(s) | 83, 746 |
| BsiEI | CGRYCG | 3 cut(s) | 249, 622, 908 |
| BsiHKAI | GWGCWC | 1 cut(s) | 355 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1046, 1175, 1460 |
| BsiSI | CCGG | 4 cut(s) | 249, 618, 1047, 1461 |
| BslFI | GGGAC | 5 cut(s) | 171, 386, 1233, 1348, 1443 |
| BsmAI | GTCTC | 2 cut(s) | 1205, 1381 |
| BsmFI | GGGAC | 5 cut(s) | 171, 386, 1233, 1348, 1443 |
| BsoBI | CYCGRG | 3 cut(s) | 1046, 1175, 1460 |
| Bsp119I | TTCGAA | 2 cut(s) | 789, 1341 |
| Bsp1286I | GDGCHC | 4 cut(s) | 88, 355, 564, 1563 |
| Bsp1407I | TGTACA | 1 cut(s) | 568 |
| Bsp143I | GATC | 8 cut(s) | 358, 831, 905, 1066, 1095, 1294, 1351, 1426 |
| Bsp68I | TCGCGA | 2 cut(s) | 342, 1412 |
| BspCNI | CTCAG | 5 cut(s) | 249, 815, 1118, 1146, 1621 |
| BspPI | GGATC | 2 cut(s) | 826, 839 |
| BspT104I | TTCGAA | 2 cut(s) | 789, 1341 |
| BspT107I | GGYRCC | 2 cut(s) | 83, 746 |
| BsrFI | RCCGGY | 1 cut(s) | 617 |
| BsrGI | TGTACA | 1 cut(s) | 568 |
| BsrI | ACTGG | 6 cut(s) | 75, 159, 544, 635, 679, 1528 |
| BssAI | RCCGGY | 1 cut(s) | 617 |
| BssECI | CCNNGG | 6 cut(s) | 318, 680, 948, 1046, 1047, 1460 |
| BssMI | GATC | 8 cut(s) | 358, 831, 905, 1066, 1095, 1294, 1351, 1426 |
| BssNI | GRCGYC | 1 cut(s) | 747 |
| BssT1I | CCWWGG | 1 cut(s) | 680 |
| Bst2UI | CCWGG | 2 cut(s) | 182, 1234 |
| Bst6I | CTCTTC | 5 cut(s) | 30, 815, 900, 1412, 1582 |
| BstACI | GRCGYC | 1 cut(s) | 747 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 982 |
| BstAUI | TGTACA | 1 cut(s) | 568 |
| BstBI | TTCGAA | 2 cut(s) | 789, 1341 |
| BstDEI | CTNAG | 8 cut(s) | 128, 236, 728, 802, 997, 1105, 1133, 1629 |
| BstDSI | CCRYGG | 1 cut(s) | 318 |
| BstEII | GGTNACC | 1 cut(s) | 543 |
| BstF5I | GGATG | 8 cut(s) | 7, 96, 108, 177, 525, 781, 932, 1402 |
| BstH2I | RGCGCY | 1 cut(s) | 750 |
| BstHHI | GCGC | 6 cut(s) | 274, 349, 423, 749, 1077, 1153 |
| BstKTI | GATC | 8 cut(s) | 361, 834, 908, 1069, 1098, 1297, 1354, 1429 |
| BstMAI | GTCTC | 2 cut(s) | 1205, 1381 |
| BstMBI | GATC | 8 cut(s) | 358, 831, 905, 1066, 1095, 1294, 1351, 1426 |
| BstMCI | CGRYCG | 3 cut(s) | 249, 622, 908 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 420, 507, 982, 1150 |
| BstNI | CCWGG | 2 cut(s) | 182, 1234 |
| BstNSI | RCATGY | 1 cut(s) | 1282 |
| BstPI | GGTNACC | 1 cut(s) | 543 |
| BstSCI | CCNGG | 6 cut(s) | 180, 1045, 1046, 1232, 1459, 1460 |
| BstSFI | CTRYAG | 1 cut(s) | 1548 |
| BstSLI | GKGCMC | 1 cut(s) | 88 |
| BstV1I | GCAGC | 2 cut(s) | 902, 1519 |
| BstV2I | GAAGAC | 1 cut(s) | 1578 |
| BstX2I | RGATCY | 3 cut(s) | 358, 831, 1426 |
| BstYI | RGATCY | 3 cut(s) | 358, 831, 1426 |
| BstZI | CGGCCG | 1 cut(s) | 619 |
| BtgI | CCRYGG | 1 cut(s) | 318 |
| BtgZI | GCGATG | 2 cut(s) | 423, 876 |
| BtsCI | GGATG | 8 cut(s) | 7, 96, 108, 177, 525, 781, 932, 1402 |
| BtsIMutI | CAGTG | 2 cut(s) | 82, 1521 |
| BtuMI | TCGCGA | 2 cut(s) | 342, 1412 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1523, 1628 |
| CfoI | GCGC | 6 cut(s) | 274, 349, 423, 749, 1077, 1153 |
| Cfr10I | RCCGGY | 1 cut(s) | 617 |
| Cfr13I | GGNCC | 8 cut(s) | 158, 677, 700, 1247, 1259, 1308, 1335, 1464 |
| Cfr42I | CCGCGG | 1 cut(s) | 321 |
| Cfr9I | CCCGGG | 2 cut(s) | 1046, 1460 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 3 cut(s) | 569, 628, 928 |
| CviAII | CATG | 7 cut(s) | 146, 333, 572, 778, 977, 1034, 1279 |
| CviQI | GTAC | 3 cut(s) | 569, 628, 928 |
| DdeI | CTNAG | 8 cut(s) | 128, 236, 728, 802, 997, 1105, 1133, 1629 |
| DinI | GGCGCC | 1 cut(s) | 748 |
| DpnI | GATC | 8 cut(s) | 360, 833, 907, 1068, 1097, 1296, 1353, 1428 |
| DpnII | GATC | 8 cut(s) | 358, 831, 905, 1066, 1095, 1294, 1351, 1426 |
| DraIII | CACNNNGTG | 1 cut(s) | 1093 |
| EaeI | YGGCCR | 5 cut(s) | 302, 499, 574, 619, 712 |
| EagI | CGGCCG | 1 cut(s) | 619 |
| Eam1104I | CTCTTC | 5 cut(s) | 30, 815, 900, 1412, 1582 |
| EarI | CTCTTC | 5 cut(s) | 30, 815, 900, 1412, 1582 |
| EciI | GGCGGA | 3 cut(s) | 649, 845, 1254 |
| EclXI | CGGCCG | 1 cut(s) | 619 |
| Eco130I | CCWWGG | 1 cut(s) | 680 |
| Eco147I | AGGCCT | 1 cut(s) | 807 |
| Eco24I | GRGCYC | 2 cut(s) | 564, 1563 |
| Eco47I | GGWCC | 5 cut(s) | 158, 677, 1247, 1335, 1464 |
| Eco52I | CGGCCG | 1 cut(s) | 619 |
| Eco88I | CYCGRG | 3 cut(s) | 1046, 1175, 1460 |
| Eco91I | GGTNACC | 1 cut(s) | 543 |
| EcoO109I | RGGNCCY | 3 cut(s) | 158, 1335, 1464 |
| EcoO65I | GGTNACC | 1 cut(s) | 543 |
| EcoRII | CCWGG | 2 cut(s) | 180, 1232 |
| EcoT14I | CCWWGG | 1 cut(s) | 680 |
| EcoT22I | ATGCAT | 1 cut(s) | 783 |
| EcoT38I | GRGCYC | 2 cut(s) | 564, 1563 |
| EgeI | GGCGCC | 1 cut(s) | 748 |
| EheI | GGCGCC | 1 cut(s) | 748 |
| ErhI | CCWWGG | 1 cut(s) | 680 |
| FaeI | CATG | 7 cut(s) | 149, 336, 575, 781, 980, 1037, 1282 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 27, 59, 632, 664 |
| FaqI | GGGAC | 5 cut(s) | 171, 386, 1233, 1348, 1443 |
| FatI | CATG | 7 cut(s) | 145, 332, 571, 777, 976, 1033, 1278 |
| FauI | CCCGC | 3 cut(s) | 945, 1175, 1605 |
| FbaI | TGATCA | 1 cut(s) | 1351 |
| Fnu4HI | GCNGC | 6 cut(s) | 57, 859, 916, 986, 1122, 1533 |
| FokI | GGATG | 7 cut(s) | 83, 95, 164, 512, 768, 919, 1409 |
| FriOI | GRGCYC | 2 cut(s) | 564, 1563 |
| Fsp4HI | GCNGC | 6 cut(s) | 57, 859, 916, 986, 1122, 1533 |
| FspAI | RTGCGCAY | 1 cut(s) | 273 |
| FspBI | CTAG | 2 cut(s) | 261, 356 |
| FspI | TGCGCA | 1 cut(s) | 273 |
| GlaI | GCGC | 6 cut(s) | 273, 348, 422, 748, 1076, 1152 |
| GluI | GCNGC | 6 cut(s) | 57, 859, 916, 986, 1122, 1533 |
| GsaI | CCCAGC | 1 cut(s) | 373 |
| GsuI | CTGGAG | 3 cut(s) | 867, 1405, 1500 |
| HaeII | RGCGCY | 1 cut(s) | 750 |
| HapII | CCGG | 4 cut(s) | 249, 618, 1047, 1461 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 6 cut(s) | 274, 349, 423, 749, 1077, 1153 |
| Hin1I | GRCGYC | 1 cut(s) | 747 |
| Hin1II | CATG | 7 cut(s) | 149, 336, 575, 781, 980, 1037, 1282 |
| Hin6I | GCGC | 6 cut(s) | 272, 347, 421, 747, 1075, 1151 |
| HinP1I | GCGC | 6 cut(s) | 272, 347, 421, 747, 1075, 1151 |
| HincII | GTYRAC | 1 cut(s) | 1378 |
| HindII | GTYRAC | 1 cut(s) | 1378 |
| HindIII | AAGCTT | 1 cut(s) | 1142 |
| HinfI | GANTC | 9 cut(s) | 173, 495, 584, 817, 1014, 1183, 1508, 1574, 1625 |
| HpaII | CCGG | 4 cut(s) | 249, 618, 1047, 1461 |
| HphI | GGTGA | 5 cut(s) | 156, 307, 569, 583, 1079 |
| Hpy166II | GTNNAC | 2 cut(s) | 930, 1378 |
| Hpy188I | TCNGA | 7 cut(s) | 218, 239, 603, 949, 1108, 1585, 1630 |
| Hpy188III | TCNNGA | 8 cut(s) | 32, 341, 463, 532, 814, 821, 1028, 1411 |
| Hpy8I | GTNNAC | 2 cut(s) | 930, 1378 |
| Hpy99I | CGWCG | 2 cut(s) | 191, 700 |
| HpyAV | CCTTC | 6 cut(s) | 171, 425, 604, 1052, 1328, 1348 |
| HpyCH4V | TGCA | 5 cut(s) | 639, 654, 781, 976, 1286 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 420, 507, 982, 1150 |
| HpyF3I | CTNAG | 8 cut(s) | 128, 236, 728, 802, 997, 1105, 1133, 1629 |
| Hsp92I | GRCGYC | 1 cut(s) | 747 |
| Hsp92II | CATG | 7 cut(s) | 149, 336, 575, 781, 980, 1037, 1282 |
| HspAI | GCGC | 6 cut(s) | 272, 347, 421, 747, 1075, 1151 |
| KasI | GGCGCC | 1 cut(s) | 746 |
| Ksp22I | TGATCA | 1 cut(s) | 1351 |
| KspI | CCGCGG | 1 cut(s) | 321 |
| Kzo9I | GATC | 8 cut(s) | 358, 831, 905, 1066, 1095, 1294, 1351, 1426 |
| LmnI | GCTCC | 2 cut(s) | 129, 1445 |
| Lsp1109I | GCAGC | 2 cut(s) | 902, 1519 |
| LweI | GCATC | 3 cut(s) | 283, 519, 790 |
| MaeI | CTAG | 2 cut(s) | 261, 356 |
| MaeIII | GTNAC | 3 cut(s) | 543, 589, 1444 |
| MalI | GATC | 8 cut(s) | 360, 833, 907, 1068, 1097, 1296, 1353, 1428 |
| MboI | GATC | 8 cut(s) | 358, 831, 905, 1066, 1095, 1294, 1351, 1426 |
| MflI | RGATCY | 3 cut(s) | 358, 831, 1426 |
| MhlI | GDGCHC | 4 cut(s) | 88, 355, 564, 1563 |
| MlsI | TGGCCA | 2 cut(s) | 304, 576 |
| MluCI | AATT | 4 cut(s) | 291, 578, 837, 1242 |
| MluNI | TGGCCA | 2 cut(s) | 304, 576 |
| Mly113I | GGCGCC | 1 cut(s) | 747 |
| MlyI | GAGTC | 3 cut(s) | 578, 1568, 1634 |
| MmeI | TCCRAC | 2 cut(s) | 241, 1341 |
| Mox20I | TGGCCA | 2 cut(s) | 304, 576 |
| Mph1103I | ATGCAT | 1 cut(s) | 783 |
| MscI | TGGCCA | 2 cut(s) | 304, 576 |
| MseI | TTAA | 3 cut(s) | 45, 827, 1005 |
| Msp20I | TGGCCA | 2 cut(s) | 304, 576 |
| MspA1I | CMGCKG | 2 cut(s) | 320, 887 |
| MspI | CCGG | 4 cut(s) | 249, 618, 1047, 1461 |
| MspR9I | CCNGG | 6 cut(s) | 182, 1047, 1048, 1234, 1461, 1462 |
| MvaI | CCWGG | 2 cut(s) | 182, 1234 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 420, 507, 982, 1150 |
| NarI | GGCGCC | 1 cut(s) | 747 |
| NciI | CCSGG | 4 cut(s) | 1047, 1048, 1461, 1462 |
| NdeII | GATC | 8 cut(s) | 358, 831, 905, 1066, 1095, 1294, 1351, 1426 |
| NlaIII | CATG | 7 cut(s) | 149, 336, 575, 781, 980, 1037, 1282 |
| NmuCI | GTSAC | 2 cut(s) | 589, 1444 |
| NruI | TCGCGA | 2 cut(s) | 342, 1412 |
| NsbI | TGCGCA | 1 cut(s) | 273 |
| NsiI | ATGCAT | 1 cut(s) | 783 |
| NspI | RCATGY | 1 cut(s) | 1282 |
| NspV | TTCGAA | 2 cut(s) | 789, 1341 |
| PaeI | GCATGC | 1 cut(s) | 1282 |
| PceI | AGGCCT | 1 cut(s) | 807 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 210, 346, 717 |
| PfeI | GAWTC | 6 cut(s) | 173, 495, 817, 1014, 1183, 1508 |
| PflFI | GACNNNGTC | 1 cut(s) | 587 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1523 |
| PfoI | TCCNGGA | 1 cut(s) | 180 |
| PkrI | GCNGC | 6 cut(s) | 58, 860, 917, 987, 1123, 1534 |
| Ple19I | CGATCG | 1 cut(s) | 908 |
| PleI | GAGTC | 3 cut(s) | 578, 1568, 1633 |
| PluTI | GGCGCC | 1 cut(s) | 750 |
| PpsI | GAGTC | 3 cut(s) | 578, 1568, 1633 |
| PpuMI | RGGWCCY | 3 cut(s) | 158, 1335, 1464 |
| PshBI | ATTAAT | 1 cut(s) | 1005 |
| PsiI | TTATAA | 1 cut(s) | 1140 |
| Psp5II | RGGWCCY | 3 cut(s) | 158, 1335, 1464 |
| Psp6I | CCWGG | 2 cut(s) | 180, 1232 |
| PspEI | GGTNACC | 1 cut(s) | 543 |
| PspFI | CCCAGC | 1 cut(s) | 369 |
| PspGI | CCWGG | 2 cut(s) | 180, 1232 |
| PspPI | GGNCC | 8 cut(s) | 158, 677, 700, 1247, 1259, 1308, 1335, 1464 |
| PspPPI | RGGWCCY | 3 cut(s) | 158, 1335, 1464 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1523, 1628 |
| PsuI | RGATCY | 3 cut(s) | 358, 831, 1426 |
| PsyI | GACNNNGTC | 1 cut(s) | 587 |
| PvuI | CGATCG | 1 cut(s) | 908 |
| PvuII | CAGCTG | 1 cut(s) | 887 |
| RgaI | GCGATCGC | 1 cut(s) | 908 |
| RruI | TCGCGA | 2 cut(s) | 342, 1412 |
| RsaI | GTAC | 3 cut(s) | 570, 629, 929 |
| RsaNI | GTAC | 3 cut(s) | 569, 628, 928 |
| SacII | CCGCGG | 1 cut(s) | 321 |
| SaqAI | TTAA | 3 cut(s) | 45, 827, 1005 |
| SatI | GCNGC | 6 cut(s) | 57, 859, 916, 986, 1122, 1533 |
| Sau3AI | GATC | 8 cut(s) | 358, 831, 905, 1066, 1095, 1294, 1351, 1426 |
| Sau96I | GGNCC | 8 cut(s) | 158, 677, 700, 1247, 1259, 1308, 1335, 1464 |
| ScaI | AGTACT | 1 cut(s) | 629 |
| SchI | GAGTC | 3 cut(s) | 578, 1568, 1634 |
| ScrFI | CCNGG | 6 cut(s) | 182, 1047, 1048, 1234, 1461, 1462 |
| SduI | GDGCHC | 4 cut(s) | 88, 355, 564, 1563 |
| SfaAI | GCGATCGC | 1 cut(s) | 908 |
| SfaNI | GCATC | 3 cut(s) | 283, 519, 790 |
| SfcI | CTRYAG | 1 cut(s) | 1548 |
| SfoI | GGCGCC | 1 cut(s) | 748 |
| Sfr303I | CCGCGG | 1 cut(s) | 321 |
| SfuI | TTCGAA | 2 cut(s) | 789, 1341 |
| SgfI | GCGATCGC | 1 cut(s) | 908 |
| SgrBI | CCGCGG | 1 cut(s) | 321 |
| SinI | GGWCC | 5 cut(s) | 158, 677, 1247, 1335, 1464 |
| SmaI | CCCGGG | 2 cut(s) | 1048, 1462 |
| SmlI | CTYRAG | 2 cut(s) | 1028, 1471 |
| SmoI | CTYRAG | 2 cut(s) | 1028, 1471 |
| SpeI | ACTAGT | 1 cut(s) | 260 |
| SphI | GCATGC | 1 cut(s) | 1282 |
| Sse9I | AATT | 4 cut(s) | 291, 578, 837, 1242 |
| SseBI | AGGCCT | 1 cut(s) | 807 |
| SspDI | GGCGCC | 1 cut(s) | 746 |
| SspMI | CTAG | 2 cut(s) | 261, 356 |
| StuI | AGGCCT | 1 cut(s) | 807 |
| StyD4I | CCNGG | 6 cut(s) | 180, 1045, 1046, 1232, 1459, 1460 |
| StyI | CCWWGG | 1 cut(s) | 680 |
| TaqI | TCGA | 5 cut(s) | 486, 493, 789, 993, 1341 |
| TasI | AATT | 4 cut(s) | 291, 578, 837, 1242 |
| TatI | WGTACW | 2 cut(s) | 568, 627 |
| TauI | GCSGC | 4 cut(s) | 59, 861, 988, 1124 |
| TfiI | GAWTC | 6 cut(s) | 173, 495, 817, 1014, 1183, 1508 |
| Tru1I | TTAA | 3 cut(s) | 45, 827, 1005 |
| Tru9I | TTAA | 3 cut(s) | 45, 827, 1005 |
| TscAI | CASTG | 2 cut(s) | 82, 1528 |
| TseFI | GTSAC | 2 cut(s) | 589, 1444 |
| TseI | GCWGC | 2 cut(s) | 915, 1532 |
| Tsp45I | GTSAC | 2 cut(s) | 589, 1444 |
| TspDTI | ATGAA | 6 cut(s) | 85, 321, 426, 634, 993, 1416 |
| TspGWI | ACGGA | 2 cut(s) | 577, 1432 |
| TspMI | CCCGGG | 2 cut(s) | 1046, 1460 |
| TspRI | CASTG | 2 cut(s) | 82, 1528 |
| Tth111I | GACNNNGTC | 1 cut(s) | 587 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1523 |
| VpaK11BI | GGWCC | 5 cut(s) | 158, 677, 1247, 1335, 1464 |
| VspI | ATTAAT | 1 cut(s) | 1005 |
| XapI | RAATTY | 1 cut(s) | 837 |
| XceI | RCATGY | 1 cut(s) | 1282 |
| XmaI | CCCGGG | 2 cut(s) | 1046, 1460 |
| XspI | CTAG | 2 cut(s) | 261, 356 |
| ZrmI | AGTACT | 1 cut(s) | 629 |
| Zsp2I | ATGCAT | 1 cut(s) | 783 |