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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 306 |
| Acc65I | GGTACC | 1 cut(s) | 1021 |
| AccB1I | GGYRCC | 1 cut(s) | 1021 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 779 |
| AccII | CGCG | 4 cut(s) | 299, 656, 764, 866 |
| AccIII | TCCGGA | 1 cut(s) | 709 |
| AclWI | GGATC | 5 cut(s) | 780, 793, 998, 1026, 1046 |
| AfaI | GTAC | 5 cut(s) | 194, 637, 955, 1014, 1023 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 129, 333, 334, 439, 571, 655, 779, 844, 917 |
| AgsI | TTSAA | 7 cut(s) | 92, 449, 524, 601, 632, 642, 1091 |
| AjiI | CACGTC | 1 cut(s) | 690 |
| AjnI | CCWGG | 6 cut(s) | 37, 103, 122, 438, 876, 910 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 762, 794 |
| AluBI | AGCT | 9 cut(s) | 185, 256, 293, 311, 545, 551, 581, 733, 969 |
| AluI | AGCT | 9 cut(s) | 185, 256, 293, 311, 545, 551, 581, 733, 969 |
| Alw21I | GWGCWC | 1 cut(s) | 187 |
| Alw26I | GTCTC | 6 cut(s) | 393, 537, 703, 796, 876, 1081 |
| AlwI | GGATC | 5 cut(s) | 780, 793, 998, 1026, 1046 |
| Aor13HI | TCCGGA | 1 cut(s) | 709 |
| ApeKI | GCWGC | 8 cut(s) | 29, 32, 256, 293, 581, 584, 966, 969 |
| AseI | ATTAAT | 1 cut(s) | 282 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 236 |
| Asp718I | GGTACC | 1 cut(s) | 1021 |
| AspLEI | GCGC | 2 cut(s) | 173, 307 |
| AspS9I | GGNCC | 6 cut(s) | 16, 41, 325, 337, 472, 678 |
| AsuC2I | CCSGG | 2 cut(s) | 475, 897 |
| AsuHPI | GGTGA | 3 cut(s) | 232, 900, 1009 |
| AvaII | GGWCC | 2 cut(s) | 41, 678 |
| BamHI | GGATCC | 1 cut(s) | 785 |
| BanI | GGYRCC | 1 cut(s) | 1021 |
| BanII | GRGCYC | 3 cut(s) | 135, 152, 187 |
| BauI | CACGAG | 1 cut(s) | 81 |
| Bbv12I | GWGCWC | 1 cut(s) | 187 |
| BbvI | GCAGC | 8 cut(s) | 16, 19, 243, 280, 568, 571, 956, 978 |
| BccI | CCATC | 6 cut(s) | 122, 617, 657, 894, 900, 919 |
| BceAI | ACGGC | 2 cut(s) | 486, 531 |
| BciT130I | CCWGG | 6 cut(s) | 39, 105, 124, 440, 878, 912 |
| BcnI | CCSGG | 2 cut(s) | 475, 897 |
| BcoDI | GTCTC | 6 cut(s) | 393, 537, 703, 796, 876, 1081 |
| BfaI | CTAG | 4 cut(s) | 312, 363, 500, 734 |
| BfmI | CTRYAG | 1 cut(s) | 462 |
| BmcAI | AGTACT | 2 cut(s) | 194, 637 |
| Bme1390I | CCNGG | 8 cut(s) | 39, 105, 124, 440, 475, 878, 897, 912 |
| Bme18I | GGWCC | 2 cut(s) | 41, 678 |
| BmgBI | CACGTC | 1 cut(s) | 690 |
| BmgT120I | GGNCC | 6 cut(s) | 16, 41, 325, 337, 472, 678 |
| BmiI | GGNNCC | 8 cut(s) | 6, 99, 134, 338, 492, 771, 787, 1023 |
| BmrFI | CCNGG | 8 cut(s) | 39, 105, 124, 440, 475, 878, 897, 912 |
| BmsI | GCATC | 2 cut(s) | 182, 580 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 873, 905 |
| BpmI | CTGGAG | 4 cut(s) | 21, 126, 209, 860 |
| Bpu10I | CCTNAGC | 2 cut(s) | 51, 321 |
| BpuEI | CTTGAG | 3 cut(s) | 217, 500, 531 |
| BpuMI | CCSGG | 2 cut(s) | 475, 897 |
| BsaI | GGTCTC | 2 cut(s) | 703, 876 |
| BsaJI | CCNNGG | 2 cut(s) | 123, 877 |
| BsaWI | WCCGGW | 2 cut(s) | 709, 950 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 129, 333, 334, 439, 571, 655, 779, 844, 917 |
| Bse118I | RCCGGY | 1 cut(s) | 723 |
| Bse1I | ACTGG | 2 cut(s) | 72, 681 |
| BseAI | TCCGGA | 1 cut(s) | 709 |
| BseBI | CCWGG | 6 cut(s) | 39, 105, 124, 440, 878, 912 |
| BseDI | CCNNGG | 2 cut(s) | 123, 877 |
| BseGI | GGATG | 3 cut(s) | 133, 156, 892 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 129, 333, 334, 439, 571, 655, 779, 844, 917 |
| BseMII | CTCAG | 6 cut(s) | 42, 137, 219, 335, 688, 990 |
| BseNI | ACTGG | 2 cut(s) | 72, 681 |
| BseRI | GAGGAG | 3 cut(s) | 90, 784, 1000 |
| BseXI | GCAGC | 8 cut(s) | 16, 19, 243, 280, 568, 571, 956, 978 |
| Bsh1236I | CGCG | 4 cut(s) | 299, 656, 764, 866 |
| BshNI | GGYRCC | 1 cut(s) | 1021 |
| BsiHKAI | GWGCWC | 1 cut(s) | 187 |
| BsiSI | CCGG | 5 cut(s) | 475, 710, 724, 897, 951 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 129, 333, 334, 439, 571, 655, 779, 844, 917 |
| BsmAI | GTCTC | 6 cut(s) | 393, 537, 703, 796, 876, 1081 |
| BsmBI | CGTCTC | 1 cut(s) | 796 |
| Bso31I | GGTCTC | 2 cut(s) | 703, 876 |
| Bsp1286I | GDGCHC | 3 cut(s) | 135, 152, 187 |
| Bsp13I | TCCGGA | 1 cut(s) | 709 |
| Bsp143I | GATC | 6 cut(s) | 785, 979, 990, 1031, 1051, 1084 |
| BspCNI | CTCAG | 6 cut(s) | 43, 138, 220, 334, 687, 989 |
| BspEI | TCCGGA | 1 cut(s) | 709 |
| BspFNI | CGCG | 4 cut(s) | 299, 656, 764, 866 |
| BspHI | TCATGA | 1 cut(s) | 10 |
| BspLI | GGNNCC | 8 cut(s) | 6, 99, 134, 338, 492, 771, 787, 1023 |
| BspMAI | CTGCAG | 1 cut(s) | 466 |
| BspPI | GGATC | 5 cut(s) | 780, 793, 998, 1026, 1046 |
| BspT107I | GGYRCC | 1 cut(s) | 1021 |
| BspTNI | GGTCTC | 2 cut(s) | 703, 876 |
| BsrFI | RCCGGY | 1 cut(s) | 723 |
| BsrI | ACTGG | 2 cut(s) | 72, 681 |
| BssAI | RCCGGY | 1 cut(s) | 723 |
| BssECI | CCNNGG | 2 cut(s) | 123, 877 |
| BssMI | GATC | 6 cut(s) | 785, 979, 990, 1031, 1051, 1084 |
| BssSI | CACGAG | 1 cut(s) | 81 |
| Bst2BI | CACGAG | 1 cut(s) | 81 |
| Bst2UI | CCWGG | 6 cut(s) | 39, 105, 124, 440, 878, 912 |
| Bst6I | CTCTTC | 3 cut(s) | 949, 995, 1003 |
| BstC8I | GCNNGC | 5 cut(s) | 78, 309, 318, 553, 579 |
| BstDEI | CTNAG | 7 cut(s) | 51, 146, 228, 321, 541, 674, 976 |
| BstF5I | GGATG | 3 cut(s) | 133, 156, 892 |
| BstFNI | CGCG | 4 cut(s) | 299, 656, 764, 866 |
| BstHHI | GCGC | 2 cut(s) | 173, 307 |
| BstKTI | GATC | 6 cut(s) | 788, 982, 993, 1034, 1054, 1087 |
| BstMAI | GTCTC | 6 cut(s) | 393, 537, 703, 796, 876, 1081 |
| BstMBI | GATC | 6 cut(s) | 785, 979, 990, 1031, 1051, 1084 |
| BstNI | CCWGG | 6 cut(s) | 39, 105, 124, 440, 878, 912 |
| BstSCI | CCNGG | 8 cut(s) | 37, 103, 122, 438, 473, 876, 895, 910 |
| BstSFI | CTRYAG | 1 cut(s) | 462 |
| BstUI | CGCG | 4 cut(s) | 299, 656, 764, 866 |
| BstV1I | GCAGC | 8 cut(s) | 16, 19, 243, 280, 568, 571, 956, 978 |
| BstX2I | RGATCY | 4 cut(s) | 785, 990, 1031, 1051 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 187 |
| BstYI | RGATCY | 4 cut(s) | 785, 990, 1031, 1051 |
| BtrI | CACGTC | 1 cut(s) | 690 |
| BtsCI | GGATG | 3 cut(s) | 133, 156, 892 |
| BtsI | GCAGTG | 2 cut(s) | 44, 471 |
| BtsIMutI | CAGTG | 4 cut(s) | 44, 225, 471, 688 |
| Cac8I | GCNNGC | 5 cut(s) | 78, 309, 318, 553, 579 |
| CciI | TCATGA | 1 cut(s) | 10 |
| CfoI | GCGC | 2 cut(s) | 173, 307 |
| Cfr10I | RCCGGY | 1 cut(s) | 723 |
| Cfr13I | GGNCC | 6 cut(s) | 16, 41, 325, 337, 472, 678 |
| CseI | GACGC | 1 cut(s) | 365 |
| Csp6I | GTAC | 5 cut(s) | 193, 636, 954, 1013, 1022 |
| CviAII | CATG | 4 cut(s) | 11, 20, 485, 663 |
| CviQI | GTAC | 5 cut(s) | 193, 636, 954, 1013, 1022 |
| DdeI | CTNAG | 7 cut(s) | 51, 146, 228, 321, 541, 674, 976 |
| DpnI | GATC | 6 cut(s) | 787, 981, 992, 1033, 1053, 1086 |
| DpnII | GATC | 6 cut(s) | 785, 979, 990, 1031, 1051, 1084 |
| DraI | TTTAAA | 1 cut(s) | 1066 |
| Eam1104I | CTCTTC | 3 cut(s) | 949, 995, 1003 |
| EarI | CTCTTC | 3 cut(s) | 949, 995, 1003 |
| EciI | GGCGGA | 1 cut(s) | 845 |
| Ecl136II | GAGCTC | 1 cut(s) | 185 |
| Eco24I | GRGCYC | 3 cut(s) | 135, 152, 187 |
| Eco31I | GGTCTC | 2 cut(s) | 703, 876 |
| Eco47I | GGWCC | 2 cut(s) | 41, 678 |
| Eco53kI | GAGCTC | 1 cut(s) | 185 |
| EcoICRI | GAGCTC | 1 cut(s) | 185 |
| EcoO109I | RGGNCCY | 1 cut(s) | 337 |
| EcoRII | CCWGG | 6 cut(s) | 37, 103, 122, 438, 876, 910 |
| EcoT38I | GRGCYC | 3 cut(s) | 135, 152, 187 |
| Esp3I | CGTCTC | 1 cut(s) | 796 |
| FaeI | CATG | 4 cut(s) | 14, 23, 488, 666 |
| FaiI | YATR | 7 cut(s) | 12, 21, 113, 333, 486, 664, 923 |
| FatI | CATG | 4 cut(s) | 10, 19, 484, 662 |
| FokI | GGATG | 3 cut(s) | 140, 143, 879 |
| FriOI | GRGCYC | 3 cut(s) | 135, 152, 187 |
| FspBI | CTAG | 4 cut(s) | 312, 363, 500, 734 |
| FspI | TGCGCA | 1 cut(s) | 306 |
| GlaI | GCGC | 2 cut(s) | 172, 306 |
| GsuI | CTGGAG | 4 cut(s) | 21, 126, 209, 860 |
| HapII | CCGG | 5 cut(s) | 475, 710, 724, 897, 951 |
| HgaI | GACGC | 1 cut(s) | 365 |
| HhaI | GCGC | 2 cut(s) | 173, 307 |
| Hin1II | CATG | 4 cut(s) | 14, 23, 488, 666 |
| Hin6I | GCGC | 2 cut(s) | 171, 305 |
| HinP1I | GCGC | 2 cut(s) | 171, 305 |
| HindIII | AAGCTT | 1 cut(s) | 549 |
| HinfI | GANTC | 2 cut(s) | 418, 974 |
| HpaII | CCGG | 5 cut(s) | 475, 710, 724, 897, 951 |
| HphI | GGTGA | 3 cut(s) | 232, 900, 1009 |
| Hpy166II | GTNNAC | 3 cut(s) | 44, 215, 240 |
| Hpy188I | TCNGA | 4 cut(s) | 147, 799, 979, 984 |
| Hpy188III | TCNNGA | 6 cut(s) | 11, 63, 188, 212, 702, 710 |
| Hpy8I | GTNNAC | 3 cut(s) | 44, 215, 240 |
| Hpy99I | CGWCG | 1 cut(s) | 213 |
| HpyAV | CCTTC | 4 cut(s) | 69, 152, 827, 947 |
| HpyCH4IV | ACGT | 2 cut(s) | 689, 840 |
| HpyCH4V | TGCA | 1 cut(s) | 464 |
| HpyF3I | CTNAG | 7 cut(s) | 51, 146, 228, 321, 541, 674, 976 |
| HpySE526I | ACGT | 2 cut(s) | 689, 840 |
| Hsp92II | CATG | 4 cut(s) | 14, 23, 488, 666 |
| HspAI | GCGC | 2 cut(s) | 171, 305 |
| Kpn2I | TCCGGA | 1 cut(s) | 709 |
| KpnI | GGTACC | 1 cut(s) | 1025 |
| Kzo9I | GATC | 6 cut(s) | 785, 979, 990, 1031, 1051, 1084 |
| LmnI | GCTCC | 6 cut(s) | 4, 40, 103, 138, 574, 760 |
| Lsp1109I | GCAGC | 8 cut(s) | 16, 19, 243, 280, 568, 571, 956, 978 |
| LweI | GCATC | 2 cut(s) | 182, 580 |
| MaeI | CTAG | 4 cut(s) | 312, 363, 500, 734 |
| MaeII | ACGT | 2 cut(s) | 689, 840 |
| MaeIII | GTNAC | 1 cut(s) | 466 |
| MalI | GATC | 6 cut(s) | 787, 981, 992, 1033, 1053, 1086 |
| MboI | GATC | 6 cut(s) | 785, 979, 990, 1031, 1051, 1084 |
| MboII | GAAGA | 7 cut(s) | 260, 416, 753, 936, 1012, 1020, 1079 |
| MfeI | CAATTG | 1 cut(s) | 455 |
| MflI | RGATCY | 4 cut(s) | 785, 990, 1031, 1051 |
| MhlI | GDGCHC | 3 cut(s) | 135, 152, 187 |
| MluCI | AATT | 2 cut(s) | 455, 601 |
| MlyI | GAGTC | 1 cut(s) | 968 |
| MmeI | TCCRAC | 1 cut(s) | 160 |
| MroI | TCCGGA | 1 cut(s) | 709 |
| MroXI | GAANNNNTTC | 1 cut(s) | 236 |
| MseI | TTAA | 3 cut(s) | 282, 411, 1065 |
| MspA1I | CMGCKG | 2 cut(s) | 969, 1019 |
| MspI | CCGG | 5 cut(s) | 475, 710, 724, 897, 951 |
| MspR9I | CCNGG | 8 cut(s) | 39, 105, 124, 440, 475, 878, 897, 912 |
| MunI | CAATTG | 1 cut(s) | 455 |
| MvaI | CCWGG | 6 cut(s) | 39, 105, 124, 440, 878, 912 |
| MvnI | CGCG | 4 cut(s) | 299, 656, 764, 866 |
| NciI | CCSGG | 2 cut(s) | 475, 897 |
| NdeII | GATC | 6 cut(s) | 785, 979, 990, 1031, 1051, 1084 |
| NlaIII | CATG | 4 cut(s) | 14, 23, 488, 666 |
| NlaIV | GGNNCC | 8 cut(s) | 6, 99, 134, 338, 492, 771, 787, 1023 |
| NmuCI | GTSAC | 1 cut(s) | 466 |
| NsbI | TGCGCA | 1 cut(s) | 306 |
| PagI | TCATGA | 1 cut(s) | 10 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 363, 846 |
| PdmI | GAANNNNTTC | 1 cut(s) | 236 |
| PfeI | GAWTC | 1 cut(s) | 418 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 779 |
| PfoI | TCCNGGA | 3 cut(s) | 103, 438, 895 |
| PleI | GAGTC | 1 cut(s) | 968 |
| PpsI | GAGTC | 1 cut(s) | 968 |
| PshBI | ATTAAT | 1 cut(s) | 282 |
| Psp124BI | GAGCTC | 1 cut(s) | 187 |
| Psp6I | CCWGG | 6 cut(s) | 37, 103, 122, 438, 876, 910 |
| PspGI | CCWGG | 6 cut(s) | 37, 103, 122, 438, 876, 910 |
| PspN4I | GGNNCC | 8 cut(s) | 6, 99, 134, 338, 492, 771, 787, 1023 |
| PspPI | GGNCC | 6 cut(s) | 16, 41, 325, 337, 472, 678 |
| PstI | CTGCAG | 1 cut(s) | 466 |
| PsuI | RGATCY | 4 cut(s) | 785, 990, 1031, 1051 |
| PvuII | CAGCTG | 1 cut(s) | 969 |
| RsaI | GTAC | 5 cut(s) | 194, 637, 955, 1014, 1023 |
| RsaNI | GTAC | 5 cut(s) | 193, 636, 954, 1013, 1022 |
| SacI | GAGCTC | 1 cut(s) | 187 |
| SaqAI | TTAA | 3 cut(s) | 282, 411, 1065 |
| Sau3AI | GATC | 6 cut(s) | 785, 979, 990, 1031, 1051, 1084 |
| Sau96I | GGNCC | 6 cut(s) | 16, 41, 325, 337, 472, 678 |
| ScaI | AGTACT | 2 cut(s) | 194, 637 |
| SchI | GAGTC | 1 cut(s) | 968 |
| ScrFI | CCNGG | 8 cut(s) | 39, 105, 124, 440, 475, 878, 897, 912 |
| SduI | GDGCHC | 3 cut(s) | 135, 152, 187 |
| SfaNI | GCATC | 2 cut(s) | 182, 580 |
| SfcI | CTRYAG | 1 cut(s) | 462 |
| SinI | GGWCC | 2 cut(s) | 41, 678 |
| SmlI | CTYRAG | 3 cut(s) | 196, 479, 546 |
| SmoI | CTYRAG | 3 cut(s) | 196, 479, 546 |
| Sse9I | AATT | 2 cut(s) | 455, 601 |
| SspMI | CTAG | 4 cut(s) | 312, 363, 500, 734 |
| SstI | GAGCTC | 1 cut(s) | 187 |
| StyD4I | CCNGG | 8 cut(s) | 37, 103, 122, 438, 473, 876, 895, 910 |
| TaiI | ACGT | 2 cut(s) | 692, 843 |
| TasI | AATT | 2 cut(s) | 455, 601 |
| TatI | WGTACW | 2 cut(s) | 192, 635 |
| TauI | GCSGC | 4 cut(s) | 299, 659, 869, 1045 |
| TfiI | GAWTC | 1 cut(s) | 418 |
| Tru1I | TTAA | 3 cut(s) | 282, 411, 1065 |
| Tru9I | TTAA | 3 cut(s) | 282, 411, 1065 |
| TscAI | CASTG | 4 cut(s) | 51, 232, 471, 688 |
| TseFI | GTSAC | 1 cut(s) | 466 |
| TseI | GCWGC | 8 cut(s) | 29, 32, 256, 293, 581, 584, 966, 969 |
| Tsp45I | GTSAC | 1 cut(s) | 466 |
| TspGWI | ACGGA | 5 cut(s) | 197, 292, 778, 795, 1061 |
| TspRI | CASTG | 4 cut(s) | 51, 232, 471, 688 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 779 |
| VpaK11BI | GGWCC | 2 cut(s) | 41, 678 |
| VspI | ATTAAT | 1 cut(s) | 282 |
| XmnI | GAANNNNTTC | 1 cut(s) | 236 |
| XspI | CTAG | 4 cut(s) | 312, 363, 500, 734 |
| ZrmI | AGTACT | 2 cut(s) | 194, 637 |