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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 676, 793 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1288 |
| AccBSI | CCGCTC | 1 cut(s) | 330 |
| AccI | GTMKAC | 1 cut(s) | 51 |
| AclWI | GGATC | 1 cut(s) | 737 |
| AcoI | YGGCCR | 2 cut(s) | 395, 816 |
| AcsI | RAATTY | 1 cut(s) | 1043 |
| AcuI | CTGAAG | 4 cut(s) | 81, 219, 408, 1056 |
| AfaI | GTAC | 2 cut(s) | 612, 894 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 262, 356, 724, 814, 1288 |
| AgsI | TTSAA | 4 cut(s) | 179, 227, 662, 1247 |
| AjnI | CCWGG | 2 cut(s) | 261, 350 |
| Alw21I | GWGCWC | 3 cut(s) | 250, 994, 1065 |
| Alw26I | GTCTC | 2 cut(s) | 97, 1365 |
| AlwI | GGATC | 1 cut(s) | 737 |
| Ama87I | CYCGRG | 3 cut(s) | 554, 593, 857 |
| AoxI | GGCC | 9 cut(s) | 30, 212, 218, 258, 395, 816, 1144, 1278, 1299 |
| ApaI | GGGCCC | 1 cut(s) | 34 |
| ApeKI | GCWGC | 9 cut(s) | 302, 305, 324, 428, 940, 1333, 1343, 1409, 1412 |
| ApoI | RAATTY | 1 cut(s) | 1043 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 113, 145 |
| AscI | GGCGCGCC | 1 cut(s) | 978 |
| AseI | ATTAAT | 1 cut(s) | 1089 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 483 |
| AspLEI | GCGC | 9 cut(s) | 244, 324, 344, 460, 466, 980, 982, 1084, 1114 |
| AsuC2I | CCSGG | 4 cut(s) | 217, 257, 620, 975 |
| AsuHPI | GGTGA | 2 cut(s) | 543, 1306 |
| AsuII | TTCGAA | 1 cut(s) | 1350 |
| AsuNHI | GCTAGC | 1 cut(s) | 1421 |
| AvaI | CYCGRG | 3 cut(s) | 554, 593, 857 |
| AvaII | GGWCC | 7 cut(s) | 232, 334, 440, 956, 1126, 1207, 1236 |
| AxyI | CCTNAGG | 1 cut(s) | 1180 |
| BaeGI | GKGCMC | 1 cut(s) | 34 |
| BanII | GRGCYC | 5 cut(s) | 34, 250, 756, 994, 1065 |
| BbsI | GAAGAC | 1 cut(s) | 207 |
| Bbv12I | GWGCWC | 3 cut(s) | 250, 994, 1065 |
| BbvCI | CCTCAGC | 2 cut(s) | 152, 723 |
| BbvI | GCAGC | 9 cut(s) | 292, 314, 336, 415, 927, 1345, 1355, 1396, 1399 |
| BccI | CCATC | 3 cut(s) | 47, 406, 1000 |
| BceAI | ACGGC | 3 cut(s) | 387, 962, 1314 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 113, 147, 612, 646 |
| BciT130I | CCWGG | 2 cut(s) | 263, 352 |
| BcnI | CCSGG | 4 cut(s) | 217, 257, 620, 975 |
| BcoDI | GTCTC | 2 cut(s) | 97, 1365 |
| BfaI | CTAG | 8 cut(s) | 210, 311, 432, 911, 987, 1119, 1422, 1433 |
| BfmI | CTRYAG | 2 cut(s) | 48, 684 |
| BfoI | RGCGCY | 2 cut(s) | 461, 467 |
| BfuAI | ACCTGC | 2 cut(s) | 676, 793 |
| Bme1390I | CCNGG | 6 cut(s) | 217, 257, 263, 352, 620, 975 |
| Bme18I | GGWCC | 7 cut(s) | 232, 334, 440, 956, 1126, 1207, 1236 |
| BmeT110I | CYCGRG | 3 cut(s) | 554, 593, 857 |
| BmiI | GGNNCC | 8 cut(s) | 32, 215, 336, 906, 957, 1208, 1238, 1320 |
| BmrFI | CCNGG | 6 cut(s) | 217, 257, 263, 352, 620, 975 |
| BmrI | ACTGGG | 1 cut(s) | 1276 |
| BmsI | GCATC | 3 cut(s) | 279, 574, 1175 |
| BmtI | GCTAGC | 1 cut(s) | 1425 |
| BmuI | ACTGGG | 1 cut(s) | 1276 |
| BpiI | GAAGAC | 1 cut(s) | 207 |
| BpmI | CTGGAG | 2 cut(s) | 276, 681 |
| Bpu10I | CCTNAGC | 4 cut(s) | 152, 723, 993, 1339 |
| Bpu14I | TTCGAA | 1 cut(s) | 1350 |
| BpuEI | CTTGAG | 4 cut(s) | 762, 783, 1328, 1359 |
| BpuMI | CCSGG | 4 cut(s) | 217, 257, 620, 975 |
| Bsa29I | ATCGAT | 1 cut(s) | 379 |
| BsaJI | CCNNGG | 9 cut(s) | 215, 261, 350, 351, 468, 594, 618, 651, 813 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1059, 1089 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 262, 356, 724, 814, 1288 |
| Bse118I | RCCGGY | 2 cut(s) | 238, 393 |
| Bse1I | ACTGG | 2 cut(s) | 698, 1282 |
| Bse21I | CCTNAGG | 1 cut(s) | 1180 |
| BseBI | CCWGG | 2 cut(s) | 263, 352 |
| BseCI | ATCGAT | 1 cut(s) | 379 |
| BseDI | CCNNGG | 9 cut(s) | 215, 261, 350, 351, 468, 594, 618, 651, 813 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 262, 356, 724, 814, 1288 |
| BseMII | CTCAG | 5 cut(s) | 143, 714, 1007, 1337, 1376 |
| BseNI | ACTGG | 2 cut(s) | 698, 1282 |
| BsePI | GCGCGC | 1 cut(s) | 978 |
| BseRI | GAGGAG | 5 cut(s) | 279, 611, 740, 843, 897 |
| BseSI | GKGCMC | 1 cut(s) | 34 |
| BseX3I | CGGCCG | 1 cut(s) | 816 |
| BseXI | GCAGC | 9 cut(s) | 292, 314, 336, 415, 927, 1345, 1355, 1396, 1399 |
| BseYI | CCCAGC | 2 cut(s) | 410, 792 |
| Bsh1285I | CGRYCG | 5 cut(s) | 239, 819, 1104, 1110, 1189 |
| BshFI | GGCC | 9 cut(s) | 32, 214, 220, 260, 397, 818, 1146, 1280, 1301 |
| BshVI | ATCGAT | 1 cut(s) | 379 |
| BsiEI | CGRYCG | 5 cut(s) | 239, 819, 1104, 1110, 1189 |
| BsiHKAI | GWGCWC | 3 cut(s) | 250, 994, 1065 |
| BsiHKCI | CYCGRG | 3 cut(s) | 554, 593, 857 |
| BsiSI | CCGG | 7 cut(s) | 217, 239, 257, 394, 560, 620, 974 |
| BslFI | GGGAC | 4 cut(s) | 701, 791, 947, 1220 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 262, 356, 724, 814, 1288 |
| BsmAI | GTCTC | 2 cut(s) | 97, 1365 |
| BsmFI | GGGAC | 4 cut(s) | 701, 791, 947, 1220 |
| BsmI | GAATGC | 1 cut(s) | 574 |
| BsnI | GGCC | 9 cut(s) | 32, 214, 220, 260, 397, 818, 1146, 1280, 1301 |
| BsoBI | CYCGRG | 3 cut(s) | 554, 593, 857 |
| Bsp119I | TTCGAA | 1 cut(s) | 1350 |
| Bsp120I | GGGCCC | 1 cut(s) | 30 |
| Bsp1286I | GDGCHC | 5 cut(s) | 34, 250, 756, 994, 1065 |
| Bsp1407I | TGTACA | 1 cut(s) | 610 |
| Bsp143I | GATC | 5 cut(s) | 16, 376, 603, 742, 1186 |
| BspANI | GGCC | 9 cut(s) | 32, 214, 220, 260, 397, 818, 1146, 1280, 1301 |
| BspCNI | CTCAG | 5 cut(s) | 144, 715, 1006, 1336, 1375 |
| BspDI | ATCGAT | 1 cut(s) | 379 |
| BspLI | GGNNCC | 8 cut(s) | 32, 215, 336, 906, 957, 1208, 1238, 1320 |
| BspMI | ACCTGC | 2 cut(s) | 676, 793 |
| BspOI | GCTAGC | 1 cut(s) | 1425 |
| BspPI | GGATC | 1 cut(s) | 737 |
| BspT104I | TTCGAA | 1 cut(s) | 1350 |
| BsrBI | CCGCTC | 1 cut(s) | 330 |
| BsrFI | RCCGGY | 2 cut(s) | 238, 393 |
| BsrGI | TGTACA | 1 cut(s) | 610 |
| BsrI | ACTGG | 2 cut(s) | 698, 1282 |
| BssAI | RCCGGY | 2 cut(s) | 238, 393 |
| BssECI | CCNNGG | 9 cut(s) | 215, 261, 350, 351, 468, 594, 618, 651, 813 |
| BssHII | GCGCGC | 1 cut(s) | 978 |
| BssMI | GATC | 5 cut(s) | 16, 376, 603, 742, 1186 |
| Bst2UI | CCWGG | 2 cut(s) | 263, 352 |
| Bst4CI | ACNGT | 3 cut(s) | 448, 505, 548 |
| Bst6I | CTCTTC | 3 cut(s) | 146, 228, 558 |
| BstAUI | TGTACA | 1 cut(s) | 610 |
| BstBI | TTCGAA | 1 cut(s) | 1350 |
| BstDEI | CTNAG | 7 cut(s) | 152, 723, 993, 1180, 1323, 1339, 1362 |
| BstDSI | CCRYGG | 3 cut(s) | 468, 651, 813 |
| BstH2I | RGCGCY | 2 cut(s) | 461, 467 |
| BstHHI | GCGC | 9 cut(s) | 244, 324, 344, 460, 466, 980, 982, 1084, 1114 |
| BstKTI | GATC | 5 cut(s) | 19, 379, 606, 745, 1189 |
| BstMAI | GTCTC | 2 cut(s) | 97, 1365 |
| BstMBI | GATC | 5 cut(s) | 16, 376, 603, 742, 1186 |
| BstMCI | CGRYCG | 5 cut(s) | 239, 819, 1104, 1110, 1189 |
| BstNI | CCWGG | 2 cut(s) | 263, 352 |
| BstSCI | CCNGG | 6 cut(s) | 215, 255, 261, 350, 618, 973 |
| BstSFI | CTRYAG | 2 cut(s) | 48, 684 |
| BstSLI | GKGCMC | 1 cut(s) | 34 |
| BstV1I | GCAGC | 9 cut(s) | 292, 314, 336, 415, 927, 1345, 1355, 1396, 1399 |
| BstV2I | GAAGAC | 1 cut(s) | 207 |
| BstZI | CGGCCG | 1 cut(s) | 816 |
| Bsu15I | ATCGAT | 1 cut(s) | 379 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1180 |
| BsuRI | GGCC | 9 cut(s) | 32, 214, 220, 260, 397, 818, 1146, 1280, 1301 |
| BsuTUI | ATCGAT | 1 cut(s) | 379 |
| BtgI | CCRYGG | 3 cut(s) | 468, 651, 813 |
| BtgZI | GCGATG | 2 cut(s) | 236, 1370 |
| BtsIMutI | CAGTG | 1 cut(s) | 1032 |
| BveI | ACCTGC | 2 cut(s) | 676, 793 |
| CciNI | GCGGCCGC | 1 cut(s) | 816 |
| CfoI | GCGC | 9 cut(s) | 244, 324, 344, 460, 466, 980, 982, 1084, 1114 |
| Cfr10I | RCCGGY | 2 cut(s) | 238, 393 |
| Cfr42I | CCGCGG | 2 cut(s) | 654, 816 |
| ClaI | ATCGAT | 1 cut(s) | 379 |
| CseI | GACGC | 4 cut(s) | 53, 836, 1189, 1427 |
| Csp6I | GTAC | 2 cut(s) | 611, 893 |
| CviAII | CATG | 2 cut(s) | 769, 1460 |
| CviQI | GTAC | 2 cut(s) | 611, 893 |
| DdeI | CTNAG | 7 cut(s) | 152, 723, 993, 1180, 1323, 1339, 1362 |
| DpnI | GATC | 5 cut(s) | 18, 378, 605, 744, 1188 |
| DpnII | GATC | 5 cut(s) | 16, 376, 603, 742, 1186 |
| EaeI | YGGCCR | 2 cut(s) | 395, 816 |
| EagI | CGGCCG | 1 cut(s) | 816 |
| Eam1104I | CTCTTC | 3 cut(s) | 146, 228, 558 |
| EarI | CTCTTC | 3 cut(s) | 146, 228, 558 |
| Ecl136II | GAGCTC | 3 cut(s) | 248, 992, 1063 |
| EclXI | CGGCCG | 1 cut(s) | 816 |
| Eco24I | GRGCYC | 5 cut(s) | 34, 250, 756, 994, 1065 |
| Eco47I | GGWCC | 7 cut(s) | 232, 334, 440, 956, 1126, 1207, 1236 |
| Eco52I | CGGCCG | 1 cut(s) | 816 |
| Eco53kI | GAGCTC | 3 cut(s) | 248, 992, 1063 |
| Eco57I | CTGAAG | 4 cut(s) | 81, 219, 408, 1056 |
| Eco81I | CCTNAGG | 1 cut(s) | 1180 |
| Eco88I | CYCGRG | 3 cut(s) | 554, 593, 857 |
| EcoICRI | GAGCTC | 3 cut(s) | 248, 992, 1063 |
| EcoO109I | RGGNCCY | 3 cut(s) | 213, 956, 1207 |
| EcoRII | CCWGG | 2 cut(s) | 261, 350 |
| EcoT38I | GRGCYC | 5 cut(s) | 34, 250, 756, 994, 1065 |
| FaeI | CATG | 2 cut(s) | 772, 1463 |
| FaiI | YATR | 7 cut(s) | 72, 539, 629, 770, 920, 1057, 1461 |
| FaqI | GGGAC | 4 cut(s) | 701, 791, 947, 1220 |
| FatI | CATG | 2 cut(s) | 768, 1459 |
| FauI | CCCGC | 2 cut(s) | 727, 763 |
| FblI | GTMKAC | 1 cut(s) | 51 |
| FriOI | GRGCYC | 5 cut(s) | 34, 250, 756, 994, 1065 |
| FspBI | CTAG | 8 cut(s) | 210, 311, 432, 911, 987, 1119, 1422, 1433 |
| GlaI | GCGC | 9 cut(s) | 243, 323, 343, 459, 465, 979, 981, 1083, 1113 |
| GsaI | CCCAGC | 2 cut(s) | 414, 796 |
| GsuI | CTGGAG | 2 cut(s) | 276, 681 |
| HaeII | RGCGCY | 2 cut(s) | 461, 467 |
| HaeIII | GGCC | 9 cut(s) | 32, 214, 220, 260, 397, 818, 1146, 1280, 1301 |
| HapII | CCGG | 7 cut(s) | 217, 239, 257, 394, 560, 620, 974 |
| HgaI | GACGC | 4 cut(s) | 53, 836, 1189, 1427 |
| HhaI | GCGC | 9 cut(s) | 244, 324, 344, 460, 466, 980, 982, 1084, 1114 |
| Hin1II | CATG | 2 cut(s) | 772, 1463 |
| Hin6I | GCGC | 9 cut(s) | 242, 322, 342, 458, 464, 978, 980, 1082, 1112 |
| HinP1I | GCGC | 9 cut(s) | 242, 322, 342, 458, 464, 978, 980, 1082, 1112 |
| HincII | GTYRAC | 1 cut(s) | 826 |
| HindII | GTYRAC | 1 cut(s) | 826 |
| HinfI | GANTC | 6 cut(s) | 109, 157, 512, 644, 915, 1132 |
| HpaII | CCGG | 7 cut(s) | 217, 239, 257, 394, 560, 620, 974 |
| HphI | GGTGA | 2 cut(s) | 543, 1306 |
| Hpy166II | GTNNAC | 4 cut(s) | 52, 284, 551, 826 |
| Hpy188I | TCNGA | 8 cut(s) | 199, 236, 334, 478, 1236, 1326, 1394, 1470 |
| Hpy8I | GTNNAC | 4 cut(s) | 52, 284, 551, 826 |
| Hpy99I | CGWCG | 4 cut(s) | 47, 125, 393, 1421 |
| HpyAV | CCTTC | 5 cut(s) | 59, 494, 758, 1241, 1357 |
| HpyCH4III | ACNGT | 3 cut(s) | 448, 505, 548 |
| HpyCH4IV | ACGT | 1 cut(s) | 714 |
| HpyCH4V | TGCA | 8 cut(s) | 134, 532, 572, 587, 671, 704, 943, 1151 |
| HpyF3I | CTNAG | 7 cut(s) | 152, 723, 993, 1180, 1323, 1339, 1362 |
| HpySE526I | ACGT | 1 cut(s) | 714 |
| Hsp92II | CATG | 2 cut(s) | 772, 1463 |
| HspAI | GCGC | 9 cut(s) | 242, 322, 342, 458, 464, 978, 980, 1082, 1112 |
| KroI | GCCGGC | 1 cut(s) | 393 |
| KroNI | GCCGGC | 1 cut(s) | 395 |
| KspI | CCGCGG | 2 cut(s) | 654, 816 |
| Kzo9I | GATC | 5 cut(s) | 16, 376, 603, 742, 1186 |
| LmnI | GCTCC | 2 cut(s) | 598, 910 |
| Lsp1109I | GCAGC | 9 cut(s) | 292, 314, 336, 415, 927, 1345, 1355, 1396, 1399 |
| LweI | GCATC | 3 cut(s) | 279, 574, 1175 |
| MaeI | CTAG | 8 cut(s) | 210, 311, 432, 911, 987, 1119, 1422, 1433 |
| MaeII | ACGT | 1 cut(s) | 714 |
| MaeIII | GTNAC | 2 cut(s) | 710, 1294 |
| MalI | GATC | 5 cut(s) | 18, 378, 605, 744, 1188 |
| MbiI | CCGCTC | 1 cut(s) | 330 |
| MboI | GATC | 5 cut(s) | 16, 376, 603, 742, 1186 |
| MboII | GAAGA | 8 cut(s) | 11, 74, 133, 212, 215, 414, 575, 674 |
| MfeI | CAATTG | 1 cut(s) | 100 |
| MhlI | GDGCHC | 5 cut(s) | 34, 250, 756, 994, 1065 |
| MluCI | AATT | 5 cut(s) | 12, 100, 276, 522, 1043 |
| MlyI | GAGTC | 3 cut(s) | 103, 924, 1126 |
| MmeI | TCCRAC | 3 cut(s) | 259, 1417, 1448 |
| MroNI | GCCGGC | 1 cut(s) | 393 |
| MroXI | GAANNNNTTC | 1 cut(s) | 483 |
| MseI | TTAA | 1 cut(s) | 1089 |
| MspA1I | CMGCKG | 7 cut(s) | 305, 428, 653, 722, 758, 815, 821 |
| MspI | CCGG | 7 cut(s) | 217, 239, 257, 394, 560, 620, 974 |
| MspR9I | CCNGG | 6 cut(s) | 217, 257, 263, 352, 620, 975 |
| MunI | CAATTG | 1 cut(s) | 100 |
| Mva1269I | GAATGC | 1 cut(s) | 574 |
| MvaI | CCWGG | 2 cut(s) | 263, 352 |
| NaeI | GCCGGC | 1 cut(s) | 395 |
| NciI | CCSGG | 4 cut(s) | 217, 257, 620, 975 |
| NdeII | GATC | 5 cut(s) | 16, 376, 603, 742, 1186 |
| NgoMIV | GCCGGC | 1 cut(s) | 393 |
| NheI | GCTAGC | 1 cut(s) | 1421 |
| NlaIII | CATG | 2 cut(s) | 772, 1463 |
| NlaIV | GGNNCC | 8 cut(s) | 32, 215, 336, 906, 957, 1208, 1238, 1320 |
| NmeAIII | GCCGAG | 1 cut(s) | 775 |
| NmuCI | GTSAC | 1 cut(s) | 1294 |
| NotI | GCGGCCGC | 1 cut(s) | 816 |
| NspV | TTCGAA | 1 cut(s) | 1350 |
| PalAI | GGCGCGCC | 1 cut(s) | 978 |
| PasI | CCCWGGG | 1 cut(s) | 351 |
| PauI | GCGCGC | 1 cut(s) | 978 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 385 |
| PctI | GAATGC | 1 cut(s) | 574 |
| PdiI | GCCGGC | 1 cut(s) | 395 |
| PdmI | GAANNNNTTC | 1 cut(s) | 483 |
| PfeI | GAWTC | 3 cut(s) | 157, 512, 644 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1288 |
| Ple19I | CGATCG | 1 cut(s) | 1189 |
| PleI | GAGTC | 3 cut(s) | 103, 923, 1126 |
| PpsI | GAGTC | 3 cut(s) | 103, 923, 1126 |
| PpuMI | RGGWCCY | 2 cut(s) | 956, 1207 |
| PshBI | ATTAAT | 1 cut(s) | 1089 |
| Psp124BI | GAGCTC | 3 cut(s) | 250, 994, 1065 |
| Psp5II | RGGWCCY | 2 cut(s) | 956, 1207 |
| Psp6I | CCWGG | 2 cut(s) | 261, 350 |
| PspFI | CCCAGC | 2 cut(s) | 410, 792 |
| PspGI | CCWGG | 2 cut(s) | 261, 350 |
| PspN4I | GGNNCC | 8 cut(s) | 32, 215, 336, 906, 957, 1208, 1238, 1320 |
| PspOMI | GGGCCC | 1 cut(s) | 30 |
| PspPPI | RGGWCCY | 2 cut(s) | 956, 1207 |
| PteI | GCGCGC | 1 cut(s) | 978 |
| PvuI | CGATCG | 1 cut(s) | 1189 |
| PvuII | CAGCTG | 2 cut(s) | 305, 428 |
| RsaI | GTAC | 2 cut(s) | 612, 894 |
| RsaNI | GTAC | 2 cut(s) | 611, 893 |
| SacI | GAGCTC | 3 cut(s) | 250, 994, 1065 |
| SacII | CCGCGG | 2 cut(s) | 654, 816 |
| SaqAI | TTAA | 1 cut(s) | 1089 |
| Sau3AI | GATC | 5 cut(s) | 16, 376, 603, 742, 1186 |
| SchI | GAGTC | 3 cut(s) | 103, 924, 1126 |
| ScrFI | CCNGG | 6 cut(s) | 217, 257, 263, 352, 620, 975 |
| SduI | GDGCHC | 5 cut(s) | 34, 250, 756, 994, 1065 |
| SfaNI | GCATC | 3 cut(s) | 279, 574, 1175 |
| SfcI | CTRYAG | 2 cut(s) | 48, 684 |
| Sfr303I | CCGCGG | 2 cut(s) | 654, 816 |
| SfuI | TTCGAA | 1 cut(s) | 1350 |
| SgrBI | CCGCGG | 2 cut(s) | 654, 816 |
| SgsI | GGCGCGCC | 1 cut(s) | 978 |
| SinI | GGWCC | 7 cut(s) | 232, 334, 440, 956, 1126, 1207, 1236 |
| SmlI | CTYRAG | 4 cut(s) | 777, 798, 1307, 1374 |
| SmoI | CTYRAG | 4 cut(s) | 777, 798, 1307, 1374 |
| Sse9I | AATT | 5 cut(s) | 12, 100, 276, 522, 1043 |
| SspI | AATATT | 1 cut(s) | 1001 |
| SspMI | CTAG | 8 cut(s) | 210, 311, 432, 911, 987, 1119, 1422, 1433 |
| SstI | GAGCTC | 3 cut(s) | 250, 994, 1065 |
| StyD4I | CCNGG | 6 cut(s) | 215, 255, 261, 350, 618, 973 |
| TaaI | ACNGT | 3 cut(s) | 448, 505, 548 |
| TaiI | ACGT | 1 cut(s) | 717 |
| TaqI | TCGA | 6 cut(s) | 42, 171, 379, 897, 1189, 1350 |
| TaqII | GACCGA | 1 cut(s) | 1283 |
| TasI | AATT | 5 cut(s) | 12, 100, 276, 522, 1043 |
| TatI | WGTACW | 1 cut(s) | 610 |
| TauI | GCSGC | 8 cut(s) | 330, 653, 656, 815, 818, 821, 1020, 1146 |
| TfiI | GAWTC | 3 cut(s) | 157, 512, 644 |
| Tru1I | TTAA | 1 cut(s) | 1089 |
| Tru9I | TTAA | 1 cut(s) | 1089 |
| TscAI | CASTG | 1 cut(s) | 1039 |
| TseFI | GTSAC | 1 cut(s) | 1294 |
| TseI | GCWGC | 9 cut(s) | 302, 305, 324, 428, 940, 1333, 1343, 1409, 1412 |
| Tsp45I | GTSAC | 1 cut(s) | 1294 |
| TspDTI | ATGAA | 2 cut(s) | 378, 1452 |
| TspGWI | ACGGA | 2 cut(s) | 69, 1228 |
| TspRI | CASTG | 1 cut(s) | 1039 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1288 |
| VpaK11BI | GGWCC | 7 cut(s) | 232, 334, 440, 956, 1126, 1207, 1236 |
| VspI | ATTAAT | 1 cut(s) | 1089 |
| XapI | RAATTY | 1 cut(s) | 1043 |
| XbaI | TCTAGA | 1 cut(s) | 1432 |
| XmiI | GTMKAC | 1 cut(s) | 51 |
| XmnI | GAANNNNTTC | 1 cut(s) | 483 |
| XspI | CTAG | 8 cut(s) | 210, 311, 432, 911, 987, 1119, 1422, 1433 |