Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 1546, 2191, 2575 |
| Acc65I | GGTACC | 3 cut(s) | 71, 1213, 3266 |
| AccB1I | GGYRCC | 4 cut(s) | 71, 209, 1213, 3266 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2749 |
| AccBSI | CCGCTC | 1 cut(s) | 3066 |
| AccI | GTMKAC | 1 cut(s) | 1350 |
| AccIII | TCCGGA | 4 cut(s) | 1134, 2011, 2071, 3191 |
| AclI | AACGTT | 1 cut(s) | 2307 |
| AcoI | YGGCCR | 5 cut(s) | 242, 733, 906, 1615, 1734 |
| AcsI | RAATTY | 2 cut(s) | 819, 2504 |
| AcuI | CTGAAG | 3 cut(s) | 1518, 1839, 2517 |
| AcyI | GRCGYC | 3 cut(s) | 1233, 1569, 2627 |
| AfaI | GTAC | 9 cut(s) | 73, 259, 950, 989, 1047, 1215, 1229, 2355, 3268 |
| AfeI | AGCGCT | 1 cut(s) | 568 |
| AflIII | ACRYGT | 1 cut(s) | 2943 |
| AgeI | ACCGGT | 2 cut(s) | 757, 2233 |
| AgsI | TTSAA | 6 cut(s) | 869, 1478, 1526, 2093, 2952, 3014 |
| AjiI | CACGTC | 1 cut(s) | 3039 |
| Alw21I | GWGCWC | 2 cut(s) | 88, 1167 |
| Alw26I | GTCTC | 7 cut(s) | 186, 278, 806, 1123, 2634, 2826, 3045 |
| Ama87I | CYCGRG | 2 cut(s) | 1542, 2318 |
| Aor13HI | TCCGGA | 4 cut(s) | 1134, 2011, 2071, 3191 |
| Aor51HI | AGCGCT | 1 cut(s) | 568 |
| ApaI | GGGCCC | 5 cut(s) | 772, 1272, 1333, 1515, 1907 |
| ApoI | RAATTY | 2 cut(s) | 819, 2504 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 419, 451, 1412, 1444 |
| AseI | ATTAAT | 1 cut(s) | 2550 |
| AsiGI | ACCGGT | 2 cut(s) | 757, 2233 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2850 |
| Asp718I | GGTACC | 3 cut(s) | 71, 1213, 3266 |
| AspA2I | CCTAGG | 1 cut(s) | 2371 |
| AsuHPI | GGTGA | 4 cut(s) | 104, 319, 1974, 2767 |
| AsuII | TTCGAA | 1 cut(s) | 2811 |
| AsuNHI | GCTAGC | 1 cut(s) | 2882 |
| AvaI | CYCGRG | 2 cut(s) | 1542, 2318 |
| AvrII | CCTAGG | 1 cut(s) | 2371 |
| AxyI | CCTNAGG | 3 cut(s) | 1276, 2259, 2641 |
| BaeGI | GKGCMC | 7 cut(s) | 214, 295, 772, 1272, 1333, 1515, 1907 |
| BalI | TGGCCA | 1 cut(s) | 244 |
| BamHI | GGATCC | 3 cut(s) | 852, 1280, 2074 |
| BanI | GGYRCC | 4 cut(s) | 71, 209, 1213, 3266 |
| BanII | GRGCYC | 9 cut(s) | 750, 772, 1167, 1272, 1333, 1515, 1907, 2100, 2154 |
| BauI | CACGAG | 2 cut(s) | 294, 360 |
| BbsI | GAAGAC | 1 cut(s) | 1506 |
| Bbv12I | GWGCWC | 2 cut(s) | 88, 1167 |
| BbvCI | CCTCAGC | 2 cut(s) | 2082, 2121 |
| BceAI | ACGGC | 5 cut(s) | 69, 735, 748, 864, 2775 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 38, 72, 915, 949, 3042, 3076 |
| BcoDI | GTCTC | 7 cut(s) | 186, 278, 806, 1123, 2634, 2826, 3045 |
| BfmI | CTRYAG | 4 cut(s) | 1347, 1740, 2277, 2402 |
| BfoI | RGCGCY | 5 cut(s) | 570, 1892, 2211, 2442, 3021 |
| BfuAI | ACCTGC | 3 cut(s) | 1546, 2191, 2575 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1197 |
| BglII | AGATCT | 1 cut(s) | 298 |
| BlnI | CCTAGG | 1 cut(s) | 2371 |
| BlpI | GCTNAGC | 2 cut(s) | 552, 2148 |
| BmcAI | AGTACT | 1 cut(s) | 950 |
| BmeT110I | CYCGRG | 2 cut(s) | 1542, 2318 |
| BmgBI | CACGTC | 1 cut(s) | 3039 |
| BmrI | ACTGGG | 1 cut(s) | 2737 |
| BmsI | GCATC | 7 cut(s) | 87, 333, 789, 811, 2005, 2069, 2278 |
| BmtI | GCTAGC | 1 cut(s) | 2886 |
| BmuI | ACTGGG | 1 cut(s) | 2737 |
| BpiI | GAAGAC | 1 cut(s) | 1506 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 439, 471, 3169, 3201 |
| BpmI | CTGGAG | 2 cut(s) | 210, 1575 |
| Bpu10I | CCTNAGC | 4 cut(s) | 712, 1451, 2082, 2121 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 552, 2148 |
| Bpu14I | TTCGAA | 1 cut(s) | 2811 |
| BpuEI | CTTGAG | 6 cut(s) | 665, 2045, 2160, 2439, 2789, 2820 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 492 |
| BsaHI | GRCGYC | 3 cut(s) | 1233, 1569, 2627 |
| BsaI | GGTCTC | 1 cut(s) | 806 |
| BsaWI | WCCGGW | 9 cut(s) | 757, 1134, 1990, 2011, 2071, 2227, 2233, 3191, 3263 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 108, 138, 2520, 2550, 3186, 3216 |
| Bse118I | RCCGGY | 3 cut(s) | 757, 904, 2233 |
| Bse1I | ACTGG | 5 cut(s) | 484, 700, 1217, 1629, 2743 |
| Bse21I | CCTNAGG | 3 cut(s) | 1276, 2259, 2641 |
| BseAI | TCCGGA | 4 cut(s) | 1134, 2011, 2071, 3191 |
| BseCI | ATCGAT | 2 cut(s) | 27, 492 |
| BseGI | GGATG | 7 cut(s) | 245, 802, 1131, 1829, 2020, 2703, 2902 |
| BseNI | ACTGG | 5 cut(s) | 484, 700, 1217, 1629, 2743 |
| BseRI | GAGGAG | 7 cut(s) | 670, 1578, 2138, 2304, 3110, 3138, 3173 |
| BseSI | GKGCMC | 7 cut(s) | 214, 295, 772, 1272, 1333, 1515, 1907 |
| BseX3I | CGGCCG | 3 cut(s) | 733, 906, 1734 |
| BseYI | CCCAGC | 1 cut(s) | 1841 |
| BsgI | GTGCAG | 3 cut(s) | 658, 1774, 1982 |
| Bsh1285I | CGRYCG | 8 cut(s) | 627, 736, 909, 1737, 2238, 2565, 2571, 2650 |
| BshNI | GGYRCC | 4 cut(s) | 71, 209, 1213, 3266 |
| BshTI | ACCGGT | 2 cut(s) | 757, 2233 |
| BshVI | ATCGAT | 2 cut(s) | 27, 492 |
| BsiEI | CGRYCG | 8 cut(s) | 627, 736, 909, 1737, 2238, 2565, 2571, 2650 |
| BsiHKAI | GWGCWC | 2 cut(s) | 88, 1167 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1542, 2318 |
| BslFI | GGGAC | 6 cut(s) | 1205, 1885, 2099, 2252, 2408, 2681 |
| BsmAI | GTCTC | 7 cut(s) | 186, 278, 806, 1123, 2634, 2826, 3045 |
| BsmBI | CGTCTC | 3 cut(s) | 278, 2634, 3045 |
| BsmFI | GGGAC | 6 cut(s) | 1205, 1885, 2099, 2252, 2408, 2681 |
| BsmI | GAATGC | 4 cut(s) | 90, 319, 977, 2224 |
| Bso31I | GGTCTC | 1 cut(s) | 806 |
| BsoBI | CYCGRG | 2 cut(s) | 1542, 2318 |
| Bsp119I | TTCGAA | 1 cut(s) | 2811 |
| Bsp120I | GGGCCC | 5 cut(s) | 768, 1268, 1329, 1511, 1903 |
| Bsp13I | TCCGGA | 4 cut(s) | 1134, 2011, 2071, 3191 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 552, 2148 |
| Bsp19I | CCATGG | 1 cut(s) | 546 |
| Bsp68I | TCGCGA | 2 cut(s) | 282, 2634 |
| BspDI | ATCGAT | 2 cut(s) | 27, 492 |
| BspEI | TCCGGA | 4 cut(s) | 1134, 2011, 2071, 3191 |
| BspMAI | CTGCAG | 2 cut(s) | 2281, 2406 |
| BspMI | ACCTGC | 3 cut(s) | 1546, 2191, 2575 |
| BspOI | GCTAGC | 1 cut(s) | 2886 |
| BspQI | GCTCTTC | 1 cut(s) | 1858 |
| BspT104I | TTCGAA | 1 cut(s) | 2811 |
| BspT107I | GGYRCC | 4 cut(s) | 71, 209, 1213, 3266 |
| BspTNI | GGTCTC | 1 cut(s) | 806 |
| BsrBI | CCGCTC | 1 cut(s) | 3066 |
| BsrFI | RCCGGY | 3 cut(s) | 757, 904, 2233 |
| BsrI | ACTGG | 5 cut(s) | 484, 700, 1217, 1629, 2743 |
| BssAI | RCCGGY | 3 cut(s) | 757, 904, 2233 |
| BssNI | GRCGYC | 3 cut(s) | 1233, 1569, 2627 |
| BssSI | CACGAG | 2 cut(s) | 294, 360 |
| BssT1I | CCWWGG | 5 cut(s) | 546, 2371, 2736, 2799, 3223 |
| Bst2BI | CACGAG | 2 cut(s) | 294, 360 |
| Bst4CI | ACNGT | 6 cut(s) | 918, 1979, 2049, 2399, 2491, 2930 |
| Bst6I | CTCTTC | 5 cut(s) | 1356, 1433, 1858, 3251, 3262 |
| BstACI | GRCGYC | 3 cut(s) | 1233, 1569, 2627 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1631, 2288 |
| BstBI | TTCGAA | 1 cut(s) | 2811 |
| BstDSI | CCRYGG | 2 cut(s) | 546, 1899 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1593 |
| BstF5I | GGATG | 7 cut(s) | 245, 802, 1131, 1829, 2020, 2703, 2902 |
| BstH2I | RGCGCY | 5 cut(s) | 570, 1892, 2211, 2442, 3021 |
| BstMAI | GTCTC | 7 cut(s) | 186, 278, 806, 1123, 2634, 2826, 3045 |
| BstMCI | CGRYCG | 8 cut(s) | 627, 736, 909, 1737, 2238, 2565, 2571, 2650 |
| BstNSI | RCATGY | 6 cut(s) | 784, 1006, 1303, 1841, 2060, 3063 |
| BstSFI | CTRYAG | 4 cut(s) | 1347, 1740, 2277, 2402 |
| BstSLI | GKGCMC | 7 cut(s) | 214, 295, 772, 1272, 1333, 1515, 1907 |
| BstV2I | GAAGAC | 1 cut(s) | 1506 |
| BstX2I | RGATCY | 6 cut(s) | 298, 852, 1280, 2074, 2676, 3303 |
| BstYI | RGATCY | 6 cut(s) | 298, 852, 1280, 2074, 2676, 3303 |
| BstZI | CGGCCG | 3 cut(s) | 733, 906, 1734 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 492 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1276, 2259, 2641 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 492 |
| BtgI | CCRYGG | 2 cut(s) | 546, 1899 |
| BtgZI | GCGATG | 3 cut(s) | 809, 2046, 2831 |
| BtrI | CACGTC | 1 cut(s) | 3039 |
| BtsCI | GGATG | 7 cut(s) | 245, 802, 1131, 1829, 2020, 2703, 2902 |
| BtsI | GCAGTG | 1 cut(s) | 3286 |
| BtsIMutI | CAGTG | 5 cut(s) | 477, 693, 1636, 2487, 3286 |
| BtuMI | TCGCGA | 2 cut(s) | 282, 2634 |
| BveI | ACCTGC | 3 cut(s) | 1546, 2191, 2575 |
| CciNI | GCGGCCGC | 1 cut(s) | 1734 |
| Cfr10I | RCCGGY | 3 cut(s) | 757, 904, 2233 |
| ClaI | ATCGAT | 2 cut(s) | 27, 492 |
| CpoI | CGGWCCG | 1 cut(s) | 2926 |
| CseI | GACGC | 8 cut(s) | 295, 439, 1241, 1352, 1558, 2616, 2650, 2888 |
| Csp6I | GTAC | 9 cut(s) | 72, 258, 949, 988, 1046, 1214, 1228, 2354, 3267 |
| CspAI | ACCGGT | 2 cut(s) | 757, 2233 |
| CspI | CGGWCCG | 1 cut(s) | 2926 |
| CviAII | CATG | 9 cut(s) | 512, 547, 781, 1003, 1300, 1838, 2057, 2921, 3060 |
| CviQI | GTAC | 9 cut(s) | 72, 258, 949, 988, 1046, 1214, 1228, 2354, 3267 |
| DraI | TTTAAA | 1 cut(s) | 45 |
| EaeI | YGGCCR | 5 cut(s) | 242, 733, 906, 1615, 1734 |
| EagI | CGGCCG | 3 cut(s) | 733, 906, 1734 |
| Eam1104I | CTCTTC | 5 cut(s) | 1356, 1433, 1858, 3251, 3262 |
| EarI | CTCTTC | 5 cut(s) | 1356, 1433, 1858, 3251, 3262 |
| EciI | GGCGGA | 2 cut(s) | 866, 3158 |
| Ecl136II | GAGCTC | 1 cut(s) | 1165 |
| EclXI | CGGCCG | 3 cut(s) | 733, 906, 1734 |
| Eco130I | CCWWGG | 5 cut(s) | 546, 2371, 2736, 2799, 3223 |
| Eco147I | AGGCCT | 1 cut(s) | 1200 |
| Eco24I | GRGCYC | 9 cut(s) | 750, 772, 1167, 1272, 1333, 1515, 1907, 2100, 2154 |
| Eco31I | GGTCTC | 1 cut(s) | 806 |
| Eco32I | GATATC | 1 cut(s) | 466 |
| Eco47III | AGCGCT | 1 cut(s) | 568 |
| Eco52I | CGGCCG | 3 cut(s) | 733, 906, 1734 |
| Eco53kI | GAGCTC | 1 cut(s) | 1165 |
| Eco57I | CTGAAG | 3 cut(s) | 1518, 1839, 2517 |
| Eco81I | CCTNAGG | 3 cut(s) | 1276, 2259, 2641 |
| Eco88I | CYCGRG | 2 cut(s) | 1542, 2318 |
| EcoICRI | GAGCTC | 1 cut(s) | 1165 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1593 |
| EcoO109I | RGGNCCY | 9 cut(s) | 768, 769, 1269, 1512, 1904, 2417, 2668, 2710, 3241 |
| EcoRI | GAATTC | 1 cut(s) | 2504 |
| EcoRV | GATATC | 1 cut(s) | 466 |
| EcoT14I | CCWWGG | 5 cut(s) | 546, 2371, 2736, 2799, 3223 |
| EcoT22I | ATGCAT | 2 cut(s) | 804, 2062 |
| EcoT38I | GRGCYC | 9 cut(s) | 750, 772, 1167, 1272, 1333, 1515, 1907, 2100, 2154 |
| ErhI | CCWWGG | 5 cut(s) | 546, 2371, 2736, 2799, 3223 |
| Esp3I | CGTCTC | 3 cut(s) | 278, 2634, 3045 |
| FaeI | CATG | 9 cut(s) | 515, 550, 784, 1006, 1303, 1841, 2060, 2924, 3063 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1024, 1056, 3230, 3262 |
| FaqI | GGGAC | 6 cut(s) | 1205, 1885, 2099, 2252, 2408, 2681 |
| FatI | CATG | 9 cut(s) | 511, 546, 780, 1002, 1299, 1837, 2056, 2920, 3059 |
| FauI | CCCGC | 8 cut(s) | 282, 900, 1196, 1293, 2086, 2107, 2161, 3126 |
| FblI | GTMKAC | 1 cut(s) | 1350 |
| FokI | GGATG | 7 cut(s) | 232, 789, 1118, 1816, 2027, 2690, 2909 |
| FriOI | GRGCYC | 9 cut(s) | 750, 772, 1167, 1272, 1333, 1515, 1907, 2100, 2154 |
| GsaI | CCCAGC | 1 cut(s) | 1845 |
| GsuI | CTGGAG | 2 cut(s) | 210, 1575 |
| HaeII | RGCGCY | 5 cut(s) | 570, 1892, 2211, 2442, 3021 |
| HgaI | GACGC | 8 cut(s) | 295, 439, 1241, 1352, 1558, 2616, 2650, 2888 |
| Hin1I | GRCGYC | 3 cut(s) | 1233, 1569, 2627 |
| Hin1II | CATG | 9 cut(s) | 515, 550, 784, 1006, 1303, 1841, 2060, 2924, 3063 |
| HincII | GTYRAC | 1 cut(s) | 532 |
| HindII | GTYRAC | 1 cut(s) | 532 |
| HphI | GGTGA | 4 cut(s) | 104, 319, 1974, 2767 |
| Hpy166II | GTNNAC | 6 cut(s) | 260, 532, 1351, 1583, 1982, 2354 |
| Hpy8I | GTNNAC | 6 cut(s) | 260, 532, 1351, 1583, 1982, 2354 |
| Hpy99I | CGWCG | 6 cut(s) | 1235, 1346, 1574, 1718, 1733, 1824 |
| HpyCH4III | ACNGT | 6 cut(s) | 918, 1979, 2049, 2399, 2491, 2930 |
| HpyCH4IV | ACGT | 3 cut(s) | 2112, 2307, 3038 |
| HpySE526I | ACGT | 3 cut(s) | 2112, 2307, 3038 |
| Hsp92I | GRCGYC | 3 cut(s) | 1233, 1569, 2627 |
| Hsp92II | CATG | 9 cut(s) | 515, 550, 784, 1006, 1303, 1841, 2060, 2924, 3063 |
| Kpn2I | TCCGGA | 4 cut(s) | 1134, 2011, 2071, 3191 |
| KpnI | GGTACC | 3 cut(s) | 75, 1217, 3270 |
| LguI | GCTCTTC | 1 cut(s) | 1858 |
| LmnI | GCTCC | 6 cut(s) | 10, 1177, 2047, 2446, 3125, 3194 |
| LweI | GCATC | 7 cut(s) | 87, 333, 789, 811, 2005, 2069, 2278 |
| MaeII | ACGT | 3 cut(s) | 2112, 2307, 3038 |
| MaeIII | GTNAC | 6 cut(s) | 451, 2108, 2362, 2377, 2491, 2755 |
| MbiI | CCGCTC | 1 cut(s) | 3066 |
| MfeI | CAATTG | 2 cut(s) | 1208, 1399 |
| MflI | RGATCY | 6 cut(s) | 298, 852, 1280, 2074, 2676, 3303 |
| MlsI | TGGCCA | 1 cut(s) | 244 |
| MluI | ACGCGT | 1 cut(s) | 2943 |
| MluNI | TGGCCA | 1 cut(s) | 244 |
| MlyI | GAGTC | 8 cut(s) | 178, 518, 2359, 2385, 2630, 3107, 3187, 3281 |
| MmeI | TCCRAC | 5 cut(s) | 162, 441, 1385, 1558, 3126 |
| Mox20I | TGGCCA | 1 cut(s) | 244 |
| Mph1103I | ATGCAT | 2 cut(s) | 804, 2062 |
| MroI | TCCGGA | 4 cut(s) | 1134, 2011, 2071, 3191 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2850 |
| MscI | TGGCCA | 1 cut(s) | 244 |
| MseI | TTAA | 5 cut(s) | 44, 1019, 2550, 2982, 3047 |
| Msp20I | TGGCCA | 1 cut(s) | 244 |
| MspA1I | CMGCKG | 3 cut(s) | 1859, 2081, 2156 |
| MteI | GCGCNGCGC | 1 cut(s) | 1607 |
| MunI | CAATTG | 2 cut(s) | 1208, 1399 |
| Mva1269I | GAATGC | 4 cut(s) | 90, 319, 977, 2224 |
| NcoI | CCATGG | 1 cut(s) | 546 |
| NheI | GCTAGC | 1 cut(s) | 2882 |
| NlaIII | CATG | 9 cut(s) | 515, 550, 784, 1006, 1303, 1841, 2060, 2924, 3063 |
| NmeAIII | GCCGAG | 1 cut(s) | 2130 |
| NmuCI | GTSAC | 4 cut(s) | 451, 2362, 2377, 2755 |
| NotI | GCGGCCGC | 1 cut(s) | 1734 |
| NruI | TCGCGA | 2 cut(s) | 282, 2634 |
| NsiI | ATGCAT | 2 cut(s) | 804, 2062 |
| NspI | RCATGY | 6 cut(s) | 784, 1006, 1303, 1841, 2060, 3063 |
| NspV | TTCGAA | 1 cut(s) | 2811 |
| PaeI | GCATGC | 3 cut(s) | 784, 1303, 2060 |
| PasI | CCCWGGG | 1 cut(s) | 1782 |
| PceI | AGGCCT | 1 cut(s) | 1200 |
| PciSI | GCTCTTC | 1 cut(s) | 1858 |
| PctI | GAATGC | 4 cut(s) | 90, 319, 977, 2224 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2850 |
| PflFI | GACNNNGTC | 1 cut(s) | 527 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2749 |
| PfoI | TCCNGGA | 2 cut(s) | 187, 2706 |
| PinAI | ACCGGT | 2 cut(s) | 757, 2233 |
| Ple19I | CGATCG | 1 cut(s) | 2650 |
| PleI | GAGTC | 8 cut(s) | 178, 518, 2359, 2384, 2630, 3106, 3186, 3281 |
| PpsI | GAGTC | 8 cut(s) | 178, 518, 2359, 2384, 2630, 3106, 3186, 3281 |
| PpuMI | RGGWCCY | 3 cut(s) | 2417, 2668, 2710 |
| PshBI | ATTAAT | 1 cut(s) | 2550 |
| Psp124BI | GAGCTC | 1 cut(s) | 1167 |
| Psp1406I | AACGTT | 1 cut(s) | 2307 |
| Psp5II | RGGWCCY | 3 cut(s) | 2417, 2668, 2710 |
| PspFI | CCCAGC | 1 cut(s) | 1841 |
| PspOMI | GGGCCC | 5 cut(s) | 768, 1268, 1329, 1511, 1903 |
| PspPPI | RGGWCCY | 3 cut(s) | 2417, 2668, 2710 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 55, 87 |
| PstI | CTGCAG | 2 cut(s) | 2281, 2406 |
| PsuI | RGATCY | 6 cut(s) | 298, 852, 1280, 2074, 2676, 3303 |
| PsyI | GACNNNGTC | 1 cut(s) | 527 |
| PvuI | CGATCG | 1 cut(s) | 2650 |
| PvuII | CAGCTG | 1 cut(s) | 1859 |
| RruI | TCGCGA | 2 cut(s) | 282, 2634 |
| RsaI | GTAC | 9 cut(s) | 73, 259, 950, 989, 1047, 1215, 1229, 2355, 3268 |
| RsaNI | GTAC | 9 cut(s) | 72, 258, 949, 988, 1046, 1214, 1228, 2354, 3267 |
| Rsr2I | CGGWCCG | 1 cut(s) | 2926 |
| RsrII | CGGWCCG | 1 cut(s) | 2926 |
| SacI | GAGCTC | 1 cut(s) | 1167 |
| SapI | GCTCTTC | 1 cut(s) | 1858 |
| SaqAI | TTAA | 5 cut(s) | 44, 1019, 2550, 2982, 3047 |
| ScaI | AGTACT | 1 cut(s) | 950 |
| SchI | GAGTC | 8 cut(s) | 178, 518, 2359, 2385, 2630, 3107, 3187, 3281 |
| SfaNI | GCATC | 7 cut(s) | 87, 333, 789, 811, 2005, 2069, 2278 |
| SfcI | CTRYAG | 4 cut(s) | 1347, 1740, 2277, 2402 |
| SfuI | TTCGAA | 1 cut(s) | 2811 |
| SmlI | CTYRAG | 6 cut(s) | 644, 2024, 2175, 2454, 2768, 2835 |
| SmoI | CTYRAG | 6 cut(s) | 644, 2024, 2175, 2454, 2768, 2835 |
| SphI | GCATGC | 3 cut(s) | 784, 1303, 2060 |
| SseBI | AGGCCT | 1 cut(s) | 1200 |
| SstI | GAGCTC | 1 cut(s) | 1167 |
| StuI | AGGCCT | 1 cut(s) | 1200 |
| StyI | CCWWGG | 5 cut(s) | 546, 2371, 2736, 2799, 3223 |
| TaaI | ACNGT | 6 cut(s) | 918, 1979, 2049, 2399, 2491, 2930 |
| TaiI | ACGT | 3 cut(s) | 2115, 2310, 3041 |
| TaqII | GACCGA | 1 cut(s) | 1824 |
| TatI | WGTACW | 5 cut(s) | 257, 948, 987, 1045, 2353 |
| Tru1I | TTAA | 5 cut(s) | 44, 1019, 2550, 2982, 3047 |
| Tru9I | TTAA | 5 cut(s) | 44, 1019, 2550, 2982, 3047 |
| TscAI | CASTG | 5 cut(s) | 484, 700, 1636, 2494, 3286 |
| TseFI | GTSAC | 4 cut(s) | 451, 2362, 2377, 2755 |
| Tsp45I | GTSAC | 4 cut(s) | 451, 2362, 2377, 2755 |
| TspDTI | ATGAA | 7 cut(s) | 570, 655, 1809, 2231, 2400, 2913, 3251 |
| TspGWI | ACGGA | 4 cut(s) | 1368, 1384, 2560, 2689 |
| TspRI | CASTG | 5 cut(s) | 484, 700, 1636, 2494, 3286 |
| Tth111I | GACNNNGTC | 1 cut(s) | 527 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2749 |
| VspI | ATTAAT | 1 cut(s) | 2550 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1593 |
| XapI | RAATTY | 2 cut(s) | 819, 2504 |
| XbaI | TCTAGA | 2 cut(s) | 97, 2197 |
| XceI | RCATGY | 6 cut(s) | 784, 1006, 1303, 1841, 2060, 3063 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 359, 2743 |
| XmaJI | CCTAGG | 1 cut(s) | 2371 |
| XmiI | GTMKAC | 1 cut(s) | 1350 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2850 |
| ZrmI | AGTACT | 1 cut(s) | 950 |
| Zsp2I | ATGCAT | 2 cut(s) | 804, 2062 |