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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 20 |
| AccII | CGCG | 2 cut(s) | 54, 125 |
| AciI | CCGC | 2 cut(s) | 109, 323 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 27, 48, 84, 185, 217 |
| AflIII | ACRYGT | 1 cut(s) | 123 |
| AgsI | TTSAA | 5 cut(s) | 104, 163, 194, 204, 346 |
| AluBI | AGCT | 1 cut(s) | 296 |
| AluI | AGCT | 1 cut(s) | 296 |
| Alw26I | GTCTC | 2 cut(s) | 28, 132 |
| Ama87I | CYCGRG | 2 cut(s) | 5, 27 |
| AoxI | GGCC | 2 cut(s) | 64, 238 |
| AscI | GGCGCGCC | 1 cut(s) | 52 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 14 |
| AspA2I | CCTAGG | 1 cut(s) | 385 |
| AspLEI | GCGC | 2 cut(s) | 54, 56 |
| AspS9I | GGNCC | 3 cut(s) | 31, 64, 239 |
| AsuC2I | CCSGG | 2 cut(s) | 28, 29 |
| AvaI | CYCGRG | 2 cut(s) | 5, 27 |
| AvaII | GGWCC | 1 cut(s) | 31 |
| AvrII | CCTAGG | 1 cut(s) | 385 |
| BccI | CCATC | 1 cut(s) | 179 |
| BceAI | ACGGC | 1 cut(s) | 5 |
| BcnI | CCSGG | 2 cut(s) | 28, 29 |
| BcoDI | GTCTC | 2 cut(s) | 28, 132 |
| BfaI | CTAG | 1 cut(s) | 386 |
| BglII | AGATCT | 1 cut(s) | 151 |
| BlnI | CCTAGG | 1 cut(s) | 385 |
| Bme1390I | CCNGG | 2 cut(s) | 28, 29 |
| Bme18I | GGWCC | 1 cut(s) | 31 |
| BmeT110I | CYCGRG | 2 cut(s) | 5, 27 |
| BmgT120I | GGNCC | 3 cut(s) | 31, 64, 239 |
| BmiI | GGNNCC | 2 cut(s) | 32, 33 |
| BmrFI | CCNGG | 2 cut(s) | 28, 29 |
| BmsI | GCATC | 1 cut(s) | 242 |
| BpuMI | CCSGG | 2 cut(s) | 28, 29 |
| BsaJI | CCNNGG | 3 cut(s) | 27, 67, 385 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 27, 48, 84, 185, 217 |
| Bse118I | RCCGGY | 1 cut(s) | 48 |
| Bse1I | ACTGG | 1 cut(s) | 198 |
| BseDI | CCNNGG | 3 cut(s) | 27, 67, 385 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 27, 48, 84, 185, 217 |
| BseNI | ACTGG | 1 cut(s) | 198 |
| BsePI | GCGCGC | 1 cut(s) | 52 |
| BseRI | GAGGAG | 1 cut(s) | 345 |
| Bsh1236I | CGCG | 2 cut(s) | 54, 125 |
| BshFI | GGCC | 2 cut(s) | 66, 240 |
| BsiHKCI | CYCGRG | 2 cut(s) | 5, 27 |
| BsiSI | CCGG | 2 cut(s) | 28, 49 |
| BslFI | GGGAC | 1 cut(s) | 17 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 27, 48, 84, 185, 217 |
| BsmAI | GTCTC | 2 cut(s) | 28, 132 |
| BsmBI | CGTCTC | 2 cut(s) | 28, 132 |
| BsmFI | GGGAC | 1 cut(s) | 17 |
| BsmI | GAATGC | 1 cut(s) | 158 |
| BsnI | GGCC | 2 cut(s) | 66, 240 |
| BsoBI | CYCGRG | 2 cut(s) | 5, 27 |
| Bsp143I | GATC | 2 cut(s) | 151, 361 |
| BspACI | CCGC | 2 cut(s) | 109, 323 |
| BspANI | GGCC | 2 cut(s) | 66, 240 |
| BspFNI | CGCG | 2 cut(s) | 54, 125 |
| BspHI | TCATGA | 1 cut(s) | 358 |
| BspLI | GGNNCC | 2 cut(s) | 32, 33 |
| BsrFI | RCCGGY | 1 cut(s) | 48 |
| BsrI | ACTGG | 1 cut(s) | 198 |
| BssAI | RCCGGY | 1 cut(s) | 48 |
| BssECI | CCNNGG | 3 cut(s) | 27, 67, 385 |
| BssHII | GCGCGC | 1 cut(s) | 52 |
| BssMI | GATC | 2 cut(s) | 151, 361 |
| BssT1I | CCWWGG | 2 cut(s) | 67, 385 |
| Bst6I | CTCTTC | 1 cut(s) | 335 |
| BstC8I | GCNNGC | 1 cut(s) | 54 |
| BstFNI | CGCG | 2 cut(s) | 54, 125 |
| BstHHI | GCGC | 2 cut(s) | 54, 56 |
| BstKTI | GATC | 2 cut(s) | 154, 364 |
| BstMAI | GTCTC | 2 cut(s) | 28, 132 |
| BstMBI | GATC | 2 cut(s) | 151, 361 |
| BstSCI | CCNGG | 2 cut(s) | 26, 27 |
| BstUI | CGCG | 2 cut(s) | 54, 125 |
| BstX2I | RGATCY | 1 cut(s) | 151 |
| BstYI | RGATCY | 1 cut(s) | 151 |
| BsuRI | GGCC | 2 cut(s) | 66, 240 |
| Cac8I | GCNNGC | 1 cut(s) | 54 |
| CciI | TCATGA | 1 cut(s) | 358 |
| CfoI | GCGC | 2 cut(s) | 54, 56 |
| Cfr10I | RCCGGY | 1 cut(s) | 48 |
| Cfr13I | GGNCC | 3 cut(s) | 31, 64, 239 |
| Cfr9I | CCCGGG | 1 cut(s) | 27 |
| CseI | GACGC | 1 cut(s) | 114 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 217, 252 |
| CviAII | CATG | 2 cut(s) | 212, 359 |
| CviJI | RGCY | 7 cut(s) | 66, 227, 240, 296, 320, 390, 398 |
| CviKI_1 | RGCY | 7 cut(s) | 66, 227, 240, 296, 320, 390, 398 |
| DpnI | GATC | 2 cut(s) | 153, 363 |
| DpnII | GATC | 2 cut(s) | 151, 361 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 20 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 20 |
| Eam1104I | CTCTTC | 1 cut(s) | 335 |
| EarI | CTCTTC | 1 cut(s) | 335 |
| Eco130I | CCWWGG | 2 cut(s) | 67, 385 |
| Eco32I | GATATC | 1 cut(s) | 39 |
| Eco47I | GGWCC | 1 cut(s) | 31 |
| Eco88I | CYCGRG | 2 cut(s) | 5, 27 |
| EcoO109I | RGGNCCY | 2 cut(s) | 31, 64 |
| EcoRV | GATATC | 1 cut(s) | 39 |
| EcoT14I | CCWWGG | 2 cut(s) | 67, 385 |
| ErhI | CCWWGG | 2 cut(s) | 67, 385 |
| Esp3I | CGTCTC | 2 cut(s) | 28, 132 |
| FaeI | CATG | 2 cut(s) | 215, 362 |
| FaiI | YATR | 6 cut(s) | 213, 245, 285, 293, 360, 395 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 309, 341 |
| FaqI | GGGAC | 1 cut(s) | 17 |
| FatI | CATG | 2 cut(s) | 211, 358 |
| FauI | CCCGC | 1 cut(s) | 330 |
| FspBI | CTAG | 1 cut(s) | 386 |
| GlaI | GCGC | 2 cut(s) | 53, 55 |
| HaeIII | GGCC | 2 cut(s) | 66, 240 |
| HapII | CCGG | 2 cut(s) | 28, 49 |
| HgaI | GACGC | 1 cut(s) | 114 |
| HhaI | GCGC | 2 cut(s) | 54, 56 |
| Hin1II | CATG | 2 cut(s) | 215, 362 |
| Hin6I | GCGC | 2 cut(s) | 52, 54 |
| HinP1I | GCGC | 2 cut(s) | 52, 54 |
| HpaII | CCGG | 2 cut(s) | 28, 49 |
| Hpy188I | TCNGA | 1 cut(s) | 302 |
| Hpy188III | TCNNGA | 4 cut(s) | 34, 42, 343, 359 |
| HpyAV | CCTTC | 4 cut(s) | 4, 149, 344, 379 |
| HpyCH4V | TGCA | 1 cut(s) | 255 |
| Hsp92II | CATG | 2 cut(s) | 215, 362 |
| HspAI | GCGC | 2 cut(s) | 52, 54 |
| KflI | GGGWCCC | 1 cut(s) | 31 |
| Kzo9I | GATC | 2 cut(s) | 151, 361 |
| LmnI | GCTCC | 1 cut(s) | 87 |
| LpnPI | CCDG | 3 cut(s) | 41, 62, 211 |
| LweI | GCATC | 1 cut(s) | 242 |
| MaeI | CTAG | 1 cut(s) | 386 |
| MaeIII | GTNAC | 1 cut(s) | 92 |
| MalI | GATC | 2 cut(s) | 153, 363 |
| MboI | GATC | 2 cut(s) | 151, 361 |
| MboII | GAAGA | 2 cut(s) | 322, 342 |
| MflI | RGATCY | 1 cut(s) | 151 |
| MluCI | AATT | 2 cut(s) | 163, 234 |
| MluI | ACGCGT | 1 cut(s) | 123 |
| MnlI | CCTC | 5 cut(s) | 88, 107, 146, 366, 386 |
| MroXI | GAANNNNTTC | 1 cut(s) | 14 |
| MseI | TTAA | 1 cut(s) | 400 |
| MspI | CCGG | 2 cut(s) | 28, 49 |
| MspR9I | CCNGG | 2 cut(s) | 28, 29 |
| Mva1269I | GAATGC | 1 cut(s) | 158 |
| MvnI | CGCG | 2 cut(s) | 54, 125 |
| NciI | CCSGG | 2 cut(s) | 28, 29 |
| NdeII | GATC | 2 cut(s) | 151, 361 |
| NlaIII | CATG | 2 cut(s) | 215, 362 |
| NlaIV | GGNNCC | 2 cut(s) | 32, 33 |
| PagI | TCATGA | 1 cut(s) | 358 |
| PalAI | GGCGCGCC | 1 cut(s) | 52 |
| PauI | GCGCGC | 1 cut(s) | 52 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 228 |
| PctI | GAATGC | 1 cut(s) | 158 |
| PdmI | GAANNNNTTC | 1 cut(s) | 14 |
| PflFI | GACNNNGTC | 1 cut(s) | 218 |
| PpuMI | RGGWCCY | 1 cut(s) | 31 |
| Psp5II | RGGWCCY | 1 cut(s) | 31 |
| PspN4I | GGNNCC | 2 cut(s) | 32, 33 |
| PspPI | GGNCC | 3 cut(s) | 31, 64, 239 |
| PspPPI | RGGWCCY | 1 cut(s) | 31 |
| PsuI | RGATCY | 1 cut(s) | 151 |
| PsyI | GACNNNGTC | 1 cut(s) | 218 |
| PteI | GCGCGC | 1 cut(s) | 52 |
| SaqAI | TTAA | 1 cut(s) | 400 |
| Sau3AI | GATC | 2 cut(s) | 151, 361 |
| Sau96I | GGNCC | 3 cut(s) | 31, 64, 239 |
| ScrFI | CCNGG | 2 cut(s) | 28, 29 |
| SetI | ASST | 7 cut(s) | 80, 99, 138, 222, 298, 378, 387 |
| SfaNI | GCATC | 1 cut(s) | 242 |
| SgrAI | CRCCGGYG | 1 cut(s) | 48 |
| SgsI | GGCGCGCC | 1 cut(s) | 52 |
| SinI | GGWCC | 1 cut(s) | 31 |
| SmaI | CCCGGG | 1 cut(s) | 29 |
| Sse9I | AATT | 2 cut(s) | 163, 234 |
| SsiI | CCGC | 2 cut(s) | 109, 323 |
| SspMI | CTAG | 1 cut(s) | 386 |
| StyD4I | CCNGG | 2 cut(s) | 26, 27 |
| StyI | CCWWGG | 2 cut(s) | 67, 385 |
| TaqI | TCGA | 3 cut(s) | 80, 222, 372 |
| TasI | AATT | 2 cut(s) | 163, 234 |
| Tru1I | TTAA | 1 cut(s) | 400 |
| Tru9I | TTAA | 1 cut(s) | 400 |
| TspDTI | ATGAA | 1 cut(s) | 131 |
| TspMI | CCCGGG | 1 cut(s) | 27 |
| Tth111I | GACNNNGTC | 1 cut(s) | 218 |
| VpaK11BI | GGWCC | 1 cut(s) | 31 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 65 |
| XmaI | CCCGGG | 1 cut(s) | 27 |
| XmaJI | CCTAGG | 1 cut(s) | 385 |
| XmnI | GAANNNNTTC | 1 cut(s) | 14 |
| XspI | CTAG | 1 cut(s) | 386 |