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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 127 |
| AccB1I | GGYRCC | 1 cut(s) | 83 |
| AccI | GTMKAC | 2 cut(s) | 221, 539 |
| AccII | CGCG | 2 cut(s) | 416, 418 |
| AciI | CCGC | 8 cut(s) | 122, 167, 278, 319, 376, 418, 435, 466 |
| AclWI | GGATC | 2 cut(s) | 349, 390 |
| AcoI | YGGCCR | 1 cut(s) | 494 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AfaI | GTAC | 1 cut(s) | 126 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 294, 549 |
| AgeI | ACCGGT | 1 cut(s) | 534 |
| AgsI | TTSAA | 1 cut(s) | 259 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 281, 313 |
| AlwI | GGATC | 2 cut(s) | 349, 390 |
| AoxI | GGCC | 5 cut(s) | 206, 285, 301, 439, 494 |
| ApeKI | GCWGC | 1 cut(s) | 373 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 474, 506 |
| AsiGI | ACCGGT | 1 cut(s) | 534 |
| AspLEI | GCGC | 2 cut(s) | 272, 418 |
| AspS9I | GGNCC | 6 cut(s) | 152, 158, 233, 244, 302, 440 |
| AsuC2I | CCSGG | 2 cut(s) | 156, 249 |
| AsuHPI | GGTGA | 5 cut(s) | 156, 424, 500, 518, 524 |
| AvaII | GGWCC | 4 cut(s) | 152, 158, 233, 244 |
| BaeGI | GKGCMC | 1 cut(s) | 88 |
| BanI | GGYRCC | 1 cut(s) | 83 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 117, 149 |
| BbsI | GAAGAC | 1 cut(s) | 193 |
| BbvI | GCAGC | 1 cut(s) | 360 |
| BccI | CCATC | 6 cut(s) | 150, 201, 222, 537, 543, 552 |
| BcnI | CCSGG | 2 cut(s) | 156, 249 |
| BfaI | CTAG | 2 cut(s) | 170, 516 |
| BfuAI | ACCTGC | 1 cut(s) | 127 |
| BglII | AGATCT | 1 cut(s) | 323 |
| BisI | GCNGC | 1 cut(s) | 374 |
| BlsI | GCNGC | 1 cut(s) | 375 |
| Bme1390I | CCNGG | 2 cut(s) | 156, 249 |
| Bme18I | GGWCC | 4 cut(s) | 152, 158, 233, 244 |
| BmgT120I | GGNCC | 6 cut(s) | 152, 158, 233, 244, 302, 440 |
| BmiI | GGNNCC | 6 cut(s) | 6, 73, 85, 159, 246, 442 |
| BmrFI | CCNGG | 2 cut(s) | 156, 249 |
| BmrI | ACTGGG | 1 cut(s) | 77 |
| BmsI | GCATC | 1 cut(s) | 87 |
| BmuI | ACTGGG | 1 cut(s) | 77 |
| BpiI | GAAGAC | 1 cut(s) | 193 |
| BpuMI | CCSGG | 2 cut(s) | 156, 249 |
| Bsa29I | ATCGAT | 3 cut(s) | 27, 394, 547 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaJI | CCNNGG | 1 cut(s) | 247 |
| BsaWI | WCCGGW | 2 cut(s) | 230, 534 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 294, 549 |
| Bse118I | RCCGGY | 2 cut(s) | 74, 534 |
| Bse1I | ACTGG | 1 cut(s) | 72 |
| BseCI | ATCGAT | 3 cut(s) | 27, 394, 547 |
| BseDI | CCNNGG | 1 cut(s) | 247 |
| BseGI | GGATG | 5 cut(s) | 43, 96, 214, 274, 505 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 294, 549 |
| BseNI | ACTGG | 1 cut(s) | 72 |
| BseSI | GKGCMC | 1 cut(s) | 88 |
| BseXI | GCAGC | 1 cut(s) | 360 |
| Bsh1236I | CGCG | 2 cut(s) | 416, 418 |
| Bsh1285I | CGRYCG | 1 cut(s) | 31 |
| BshFI | GGCC | 5 cut(s) | 208, 287, 303, 441, 496 |
| BshNI | GGYRCC | 1 cut(s) | 83 |
| BshTI | ACCGGT | 1 cut(s) | 534 |
| BshVI | ATCGAT | 3 cut(s) | 27, 394, 547 |
| BsiEI | CGRYCG | 1 cut(s) | 31 |
| BsiSI | CCGG | 8 cut(s) | 75, 150, 155, 231, 249, 358, 497, 535 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 294, 549 |
| BsnI | GGCC | 5 cut(s) | 208, 287, 303, 441, 496 |
| Bsp1286I | GDGCHC | 1 cut(s) | 88 |
| Bsp143I | GATC | 4 cut(s) | 28, 323, 354, 395 |
| BspACI | CCGC | 8 cut(s) | 122, 167, 278, 319, 376, 418, 435, 466 |
| BspANI | GGCC | 5 cut(s) | 208, 287, 303, 441, 496 |
| BspDI | ATCGAT | 3 cut(s) | 27, 394, 547 |
| BspFNI | CGCG | 2 cut(s) | 416, 418 |
| BspLI | GGNNCC | 6 cut(s) | 6, 73, 85, 159, 246, 442 |
| BspMI | ACCTGC | 1 cut(s) | 127 |
| BspPI | GGATC | 2 cut(s) | 349, 390 |
| BspT107I | GGYRCC | 1 cut(s) | 83 |
| BsrFI | RCCGGY | 2 cut(s) | 74, 534 |
| BsrI | ACTGG | 1 cut(s) | 72 |
| BssAI | RCCGGY | 2 cut(s) | 74, 534 |
| BssECI | CCNNGG | 1 cut(s) | 247 |
| BssMI | GATC | 4 cut(s) | 28, 323, 354, 395 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| Bst4CI | ACNGT | 2 cut(s) | 109, 263 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstC8I | GCNNGC | 1 cut(s) | 439 |
| BstDEI | CTNAG | 1 cut(s) | 12 |
| BstF5I | GGATG | 5 cut(s) | 43, 96, 214, 274, 505 |
| BstFNI | CGCG | 2 cut(s) | 416, 418 |
| BstHHI | GCGC | 2 cut(s) | 272, 418 |
| BstKTI | GATC | 4 cut(s) | 31, 326, 357, 398 |
| BstMBI | GATC | 4 cut(s) | 28, 323, 354, 395 |
| BstMCI | CGRYCG | 1 cut(s) | 31 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 415, 502 |
| BstSCI | CCNGG | 2 cut(s) | 154, 247 |
| BstSLI | GKGCMC | 1 cut(s) | 88 |
| BstUI | CGCG | 2 cut(s) | 416, 418 |
| BstV1I | GCAGC | 1 cut(s) | 360 |
| BstV2I | GAAGAC | 1 cut(s) | 193 |
| BstX2I | RGATCY | 2 cut(s) | 323, 354 |
| BstYI | RGATCY | 2 cut(s) | 323, 354 |
| Bsu15I | ATCGAT | 3 cut(s) | 27, 394, 547 |
| BsuRI | GGCC | 5 cut(s) | 208, 287, 303, 441, 496 |
| BsuTUI | ATCGAT | 3 cut(s) | 27, 394, 547 |
| BtgZI | GCGATG | 1 cut(s) | 179 |
| BtsCI | GGATG | 5 cut(s) | 43, 96, 214, 274, 505 |
| BtsIMutI | CAGTG | 1 cut(s) | 65 |
| BveI | ACCTGC | 1 cut(s) | 127 |
| Cac8I | GCNNGC | 1 cut(s) | 439 |
| CfoI | GCGC | 2 cut(s) | 272, 418 |
| Cfr10I | RCCGGY | 2 cut(s) | 74, 534 |
| Cfr13I | GGNCC | 6 cut(s) | 152, 158, 233, 244, 302, 440 |
| ClaI | ATCGAT | 3 cut(s) | 27, 394, 547 |
| CpoI | CGGWCCG | 1 cut(s) | 152 |
| CseI | GACGC | 2 cut(s) | 198, 494 |
| Csp6I | GTAC | 1 cut(s) | 125 |
| CspAI | ACCGGT | 1 cut(s) | 534 |
| CspI | CGGWCCG | 1 cut(s) | 152 |
| CviAII | CATG | 1 cut(s) | 146 |
| CviJI | RGCY | 8 cut(s) | 5, 56, 208, 287, 303, 361, 441, 496 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 56, 208, 287, 303, 361, 441, 496 |
| CviQI | GTAC | 1 cut(s) | 125 |
| DdeI | CTNAG | 1 cut(s) | 12 |
| DpnI | GATC | 4 cut(s) | 30, 325, 356, 397 |
| DpnII | GATC | 4 cut(s) | 28, 323, 354, 395 |
| EaeI | YGGCCR | 1 cut(s) | 494 |
| Eco47I | GGWCC | 4 cut(s) | 152, 158, 233, 244 |
| EcoO109I | RGGNCCY | 2 cut(s) | 158, 244 |
| FaeI | CATG | 1 cut(s) | 149 |
| FaiI | YATR | 2 cut(s) | 147, 205 |
| FatI | CATG | 1 cut(s) | 145 |
| FblI | GTMKAC | 2 cut(s) | 221, 539 |
| Fnu4HI | GCNGC | 1 cut(s) | 374 |
| FokI | GGATG | 5 cut(s) | 50, 83, 201, 261, 512 |
| Fsp4HI | GCNGC | 1 cut(s) | 374 |
| FspBI | CTAG | 2 cut(s) | 170, 516 |
| GlaI | GCGC | 2 cut(s) | 271, 417 |
| GluI | GCNGC | 1 cut(s) | 374 |
| HaeIII | GGCC | 5 cut(s) | 208, 287, 303, 441, 496 |
| HapII | CCGG | 8 cut(s) | 75, 150, 155, 231, 249, 358, 497, 535 |
| HgaI | GACGC | 2 cut(s) | 198, 494 |
| HhaI | GCGC | 2 cut(s) | 272, 418 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 1 cut(s) | 149 |
| Hin6I | GCGC | 2 cut(s) | 270, 416 |
| HinP1I | GCGC | 2 cut(s) | 270, 416 |
| HincII | GTYRAC | 1 cut(s) | 222 |
| HindII | GTYRAC | 1 cut(s) | 222 |
| HinfI | GANTC | 1 cut(s) | 173 |
| HpaII | CCGG | 8 cut(s) | 75, 150, 155, 231, 249, 358, 497, 535 |
| HphI | GGTGA | 5 cut(s) | 156, 424, 500, 518, 524 |
| Hpy166II | GTNNAC | 2 cut(s) | 222, 540 |
| Hpy188I | TCNGA | 3 cut(s) | 131, 183, 240 |
| Hpy188III | TCNNGA | 2 cut(s) | 32, 337 |
| Hpy8I | GTNNAC | 2 cut(s) | 222, 540 |
| Hpy99I | CGWCG | 1 cut(s) | 223 |
| HpyAV | CCTTC | 3 cut(s) | 171, 235, 488 |
| HpyCH4III | ACNGT | 2 cut(s) | 109, 263 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 415, 502 |
| HpyF3I | CTNAG | 1 cut(s) | 12 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 1 cut(s) | 149 |
| HspAI | GCGC | 2 cut(s) | 270, 416 |
| Kzo9I | GATC | 4 cut(s) | 28, 323, 354, 395 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| Lsp1109I | GCAGC | 1 cut(s) | 360 |
| LweI | GCATC | 1 cut(s) | 87 |
| MaeI | CTAG | 2 cut(s) | 170, 516 |
| MaeIII | GTNAC | 1 cut(s) | 506 |
| MalI | GATC | 4 cut(s) | 30, 325, 356, 397 |
| MboI | GATC | 4 cut(s) | 28, 323, 354, 395 |
| MboII | GAAGA | 1 cut(s) | 198 |
| MflI | RGATCY | 2 cut(s) | 323, 354 |
| MhlI | GDGCHC | 1 cut(s) | 88 |
| MnlI | CCTC | 3 cut(s) | 28, 46, 246 |
| MspA1I | CMGCKG | 2 cut(s) | 319, 437 |
| MspI | CCGG | 8 cut(s) | 75, 150, 155, 231, 249, 358, 497, 535 |
| MspR9I | CCNGG | 2 cut(s) | 156, 249 |
| MvnI | CGCG | 2 cut(s) | 416, 418 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 415, 502 |
| NciI | CCSGG | 2 cut(s) | 156, 249 |
| NdeII | GATC | 4 cut(s) | 28, 323, 354, 395 |
| NlaIII | CATG | 1 cut(s) | 149 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 73, 85, 159, 246, 442 |
| NmuCI | GTSAC | 1 cut(s) | 506 |
| PfeI | GAWTC | 1 cut(s) | 173 |
| PflFI | GACNNNGTC | 1 cut(s) | 156 |
| PinAI | ACCGGT | 1 cut(s) | 534 |
| PkrI | GCNGC | 1 cut(s) | 375 |
| Ple19I | CGATCG | 1 cut(s) | 31 |
| PpuMI | RGGWCCY | 2 cut(s) | 158, 244 |
| Psp5II | RGGWCCY | 2 cut(s) | 158, 244 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 73, 85, 159, 246, 442 |
| PspPI | GGNCC | 6 cut(s) | 152, 158, 233, 244, 302, 440 |
| PspPPI | RGGWCCY | 2 cut(s) | 158, 244 |
| PsuI | RGATCY | 2 cut(s) | 323, 354 |
| PsyI | GACNNNGTC | 1 cut(s) | 156 |
| PvuI | CGATCG | 1 cut(s) | 31 |
| RsaI | GTAC | 1 cut(s) | 126 |
| RsaNI | GTAC | 1 cut(s) | 125 |
| Rsr2I | CGGWCCG | 1 cut(s) | 152 |
| RsrII | CGGWCCG | 1 cut(s) | 152 |
| SalI | GTCGAC | 1 cut(s) | 220 |
| SatI | GCNGC | 1 cut(s) | 374 |
| Sau3AI | GATC | 4 cut(s) | 28, 323, 354, 395 |
| Sau96I | GGNCC | 6 cut(s) | 152, 158, 233, 244, 302, 440 |
| ScrFI | CCNGG | 2 cut(s) | 156, 249 |
| SduI | GDGCHC | 1 cut(s) | 88 |
| SetI | ASST | 4 cut(s) | 13, 121, 480, 513 |
| SfaNI | GCATC | 1 cut(s) | 87 |
| SinI | GGWCC | 4 cut(s) | 152, 158, 233, 244 |
| SsiI | CCGC | 8 cut(s) | 122, 167, 278, 319, 376, 418, 435, 466 |
| SspMI | CTAG | 2 cut(s) | 170, 516 |
| StyD4I | CCNGG | 2 cut(s) | 154, 247 |
| TaaI | ACNGT | 2 cut(s) | 109, 263 |
| TaqI | TCGA | 7 cut(s) | 27, 221, 367, 394, 481, 488, 547 |
| TfiI | GAWTC | 1 cut(s) | 173 |
| TscAI | CASTG | 1 cut(s) | 72 |
| TseFI | GTSAC | 1 cut(s) | 506 |
| TseI | GCWGC | 1 cut(s) | 373 |
| Tsp45I | GTSAC | 1 cut(s) | 506 |
| TspDTI | ATGAA | 2 cut(s) | 54, 85 |
| TspGWI | ACGGA | 2 cut(s) | 207, 388 |
| TspRI | CASTG | 1 cut(s) | 72 |
| Tth111I | GACNNNGTC | 1 cut(s) | 156 |
| VpaK11BI | GGWCC | 4 cut(s) | 152, 158, 233, 244 |
| XmiI | GTMKAC | 2 cut(s) | 221, 539 |
| XspI | CTAG | 2 cut(s) | 170, 516 |