Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 53, 194 |
| Acc36I | ACCTGC | 1 cut(s) | 371 |
| AccB1I | GGYRCC | 4 cut(s) | 83, 163, 740, 1186 |
| AccI | GTMKAC | 1 cut(s) | 220 |
| AclWI | GGATC | 2 cut(s) | 805, 818 |
| AcoI | YGGCCR | 3 cut(s) | 302, 499, 574 |
| AfaI | GTAC | 4 cut(s) | 761, 923, 962, 996 |
| AfeI | AGCGCT | 1 cut(s) | 628 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 425, 554, 737, 1042 |
| AgeI | ACCGGT | 1 cut(s) | 617 |
| AgsI | TTSAA | 2 cut(s) | 830, 1025 |
| AjnI | CCWGG | 5 cut(s) | 247, 332, 762, 1039, 1208 |
| AluBI | AGCT | 3 cut(s) | 207, 881, 1138 |
| AluI | AGCT | 3 cut(s) | 207, 881, 1138 |
| Alw26I | GTCTC | 2 cut(s) | 109, 779 |
| AlwI | GGATC | 2 cut(s) | 805, 818 |
| Aor51HI | AGCGCT | 1 cut(s) | 628 |
| AoxI | GGCC | 8 cut(s) | 302, 499, 541, 574, 609, 657, 765, 799 |
| ApeKI | GCWGC | 2 cut(s) | 624, 1115 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 108, 140 |
| AsiGI | ACCGGT | 1 cut(s) | 617 |
| AspLEI | GCGC | 9 cut(s) | 272, 274, 320, 355, 629, 1067, 1069, 1071, 1088 |
| AspS9I | GGNCC | 5 cut(s) | 158, 232, 243, 610, 800 |
| AsuHPI | GGTGA | 3 cut(s) | 379, 429, 523 |
| AsuII | TTCGAA | 1 cut(s) | 582 |
| AvaII | GGWCC | 3 cut(s) | 158, 232, 243 |
| BaeGI | GKGCMC | 2 cut(s) | 88, 745 |
| BalI | TGGCCA | 3 cut(s) | 304, 501, 576 |
| BamHI | GGATCC | 1 cut(s) | 810 |
| BanI | GGYRCC | 4 cut(s) | 83, 163, 740, 1186 |
| BanII | GRGCYC | 2 cut(s) | 564, 1048 |
| BbvI | GCAGC | 2 cut(s) | 636, 1102 |
| BccI | CCATC | 3 cut(s) | 313, 548, 645 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 263, 297 |
| BciT130I | CCWGG | 5 cut(s) | 249, 334, 764, 1041, 1210 |
| BclI | TGATCA | 1 cut(s) | 28 |
| BcoDI | GTCTC | 2 cut(s) | 109, 779 |
| BfaI | CTAG | 1 cut(s) | 789 |
| BfoI | RGCGCY | 1 cut(s) | 630 |
| BfuAI | ACCTGC | 1 cut(s) | 371 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 675 |
| BisI | GCNGC | 8 cut(s) | 378, 447, 625, 637, 691, 853, 1084, 1116 |
| BlsI | GCNGC | 8 cut(s) | 379, 448, 626, 638, 692, 854, 1085, 1117 |
| BmcAI | AGTACT | 1 cut(s) | 996 |
| Bme1390I | CCNGG | 5 cut(s) | 249, 334, 764, 1041, 1210 |
| Bme18I | GGWCC | 3 cut(s) | 158, 232, 243 |
| BmgT120I | GGNCC | 5 cut(s) | 158, 232, 243, 610, 800 |
| BmrFI | CCNGG | 5 cut(s) | 249, 334, 764, 1041, 1210 |
| BmrI | ACTGGG | 1 cut(s) | 164 |
| BmsI | GCATC | 4 cut(s) | 186, 784, 874, 1195 |
| BmuI | ACTGGG | 1 cut(s) | 164 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 935, 967 |
| BpmI | CTGGAG | 1 cut(s) | 725 |
| Bpu14I | TTCGAA | 1 cut(s) | 582 |
| BsaJI | CCNNGG | 3 cut(s) | 247, 248, 1040 |
| BsaWI | WCCGGW | 1 cut(s) | 617 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 425, 554, 737, 1042 |
| Bse118I | RCCGGY | 1 cut(s) | 617 |
| Bse1I | ACTGG | 5 cut(s) | 159, 544, 691, 731, 1165 |
| Bse3DI | GCAATG | 2 cut(s) | 685, 693 |
| BseBI | CCWGG | 5 cut(s) | 249, 334, 764, 1041, 1210 |
| BseDI | CCNNGG | 3 cut(s) | 247, 248, 1040 |
| BseGI | GGATG | 3 cut(s) | 177, 305, 775 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 425, 554, 737, 1042 |
| BseMI | GCAATG | 2 cut(s) | 685, 693 |
| BseMII | CTCAG | 2 cut(s) | 933, 1113 |
| BseNI | ACTGG | 5 cut(s) | 159, 544, 691, 731, 1165 |
| BsePI | GCGCGC | 3 cut(s) | 270, 1065, 1067 |
| BseRI | GAGGAG | 1 cut(s) | 1008 |
| BseSI | GKGCMC | 2 cut(s) | 88, 745 |
| BseXI | GCAGC | 2 cut(s) | 636, 1102 |
| BseYI | CCCAGC | 1 cut(s) | 181 |
| Bsh1285I | CGRYCG | 1 cut(s) | 622 |
| BshFI | GGCC | 8 cut(s) | 304, 501, 543, 576, 611, 659, 767, 801 |
| BshNI | GGYRCC | 4 cut(s) | 83, 163, 740, 1186 |
| BshTI | ACCGGT | 1 cut(s) | 617 |
| BsiEI | CGRYCG | 1 cut(s) | 622 |
| BsiSI | CCGG | 3 cut(s) | 150, 161, 618 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 425, 554, 737, 1042 |
| BsmAI | GTCTC | 2 cut(s) | 109, 779 |
| BsmI | GAATGC | 1 cut(s) | 379 |
| BsnI | GGCC | 8 cut(s) | 304, 501, 543, 576, 611, 659, 767, 801 |
| Bsp119I | TTCGAA | 1 cut(s) | 582 |
| Bsp1286I | GDGCHC | 4 cut(s) | 88, 564, 745, 1048 |
| Bsp143I | GATC | 4 cut(s) | 28, 810, 1060, 1089 |
| Bsp68I | TCGCGA | 2 cut(s) | 342, 912 |
| BspANI | GGCC | 8 cut(s) | 304, 501, 543, 576, 611, 659, 767, 801 |
| BspCNI | CTCAG | 2 cut(s) | 934, 1112 |
| BspMI | ACCTGC | 1 cut(s) | 371 |
| BspPI | GGATC | 2 cut(s) | 805, 818 |
| BspT104I | TTCGAA | 1 cut(s) | 582 |
| BspT107I | GGYRCC | 4 cut(s) | 83, 163, 740, 1186 |
| BsrDI | GCAATG | 2 cut(s) | 685, 693 |
| BsrFI | RCCGGY | 1 cut(s) | 617 |
| BsrI | ACTGG | 5 cut(s) | 159, 544, 691, 731, 1165 |
| BssAI | RCCGGY | 1 cut(s) | 617 |
| BssECI | CCNNGG | 3 cut(s) | 247, 248, 1040 |
| BssHII | GCGCGC | 3 cut(s) | 270, 1065, 1067 |
| BssMI | GATC | 4 cut(s) | 28, 810, 1060, 1089 |
| Bst2UI | CCWGG | 5 cut(s) | 249, 334, 764, 1041, 1210 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 976 |
| BstBI | TTCGAA | 1 cut(s) | 582 |
| BstDEI | CTNAG | 4 cut(s) | 942, 1099, 1127, 1227 |
| BstF5I | GGATG | 3 cut(s) | 177, 305, 775 |
| BstH2I | RGCGCY | 1 cut(s) | 630 |
| BstHHI | GCGC | 9 cut(s) | 272, 274, 320, 355, 629, 1067, 1069, 1071, 1088 |
| BstKTI | GATC | 4 cut(s) | 31, 813, 1063, 1092 |
| BstMAI | GTCTC | 2 cut(s) | 109, 779 |
| BstMBI | GATC | 4 cut(s) | 28, 810, 1060, 1089 |
| BstMCI | CGRYCG | 1 cut(s) | 622 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 130, 420, 633, 675, 798, 976, 1073 |
| BstNI | CCWGG | 5 cut(s) | 249, 334, 764, 1041, 1210 |
| BstSCI | CCNGG | 5 cut(s) | 247, 332, 762, 1039, 1208 |
| BstSLI | GKGCMC | 2 cut(s) | 88, 745 |
| BstV1I | GCAGC | 2 cut(s) | 636, 1102 |
| BstX2I | RGATCY | 1 cut(s) | 810 |
| BstYI | RGATCY | 1 cut(s) | 810 |
| BsuRI | GGCC | 8 cut(s) | 304, 501, 543, 576, 611, 659, 767, 801 |
| BtgZI | GCGATG | 1 cut(s) | 664 |
| BtsCI | GGATG | 3 cut(s) | 177, 305, 775 |
| BtsI | GCAGTG | 1 cut(s) | 866 |
| BtsIMutI | CAGTG | 2 cut(s) | 738, 866 |
| BtuMI | TCGCGA | 2 cut(s) | 342, 912 |
| BveI | ACCTGC | 1 cut(s) | 371 |
| CfoI | GCGC | 9 cut(s) | 272, 274, 320, 355, 629, 1067, 1069, 1071, 1088 |
| Cfr10I | RCCGGY | 1 cut(s) | 617 |
| Cfr13I | GGNCC | 5 cut(s) | 158, 232, 243, 610, 800 |
| Csp6I | GTAC | 4 cut(s) | 760, 922, 961, 995 |
| CspAI | ACCGGT | 1 cut(s) | 617 |
| CviAII | CATG | 2 cut(s) | 170, 572 |
| CviQI | GTAC | 4 cut(s) | 760, 922, 961, 995 |
| DdeI | CTNAG | 4 cut(s) | 942, 1099, 1127, 1227 |
| DpnI | GATC | 4 cut(s) | 30, 812, 1062, 1091 |
| DpnII | GATC | 4 cut(s) | 28, 810, 1060, 1089 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 53, 194 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 53, 194 |
| EaeI | YGGCCR | 3 cut(s) | 302, 499, 574 |
| Eco24I | GRGCYC | 2 cut(s) | 564, 1048 |
| Eco47I | GGWCC | 3 cut(s) | 158, 232, 243 |
| Eco47III | AGCGCT | 1 cut(s) | 628 |
| EcoO109I | RGGNCCY | 2 cut(s) | 232, 243 |
| EcoRII | CCWGG | 5 cut(s) | 247, 332, 762, 1039, 1208 |
| EcoT22I | ATGCAT | 1 cut(s) | 777 |
| EcoT38I | GRGCYC | 2 cut(s) | 564, 1048 |
| FaeI | CATG | 2 cut(s) | 173, 575 |
| FatI | CATG | 2 cut(s) | 169, 571 |
| FauI | CCCGC | 1 cut(s) | 95 |
| FbaI | TGATCA | 1 cut(s) | 28 |
| FblI | GTMKAC | 1 cut(s) | 220 |
| Fnu4HI | GCNGC | 8 cut(s) | 378, 447, 625, 637, 691, 853, 1084, 1116 |
| FokI | GGATG | 3 cut(s) | 164, 292, 762 |
| FriOI | GRGCYC | 2 cut(s) | 564, 1048 |
| Fsp4HI | GCNGC | 8 cut(s) | 378, 447, 625, 637, 691, 853, 1084, 1116 |
| FspBI | CTAG | 1 cut(s) | 789 |
| GlaI | GCGC | 9 cut(s) | 271, 273, 319, 354, 628, 1066, 1068, 1070, 1087 |
| GluI | GCNGC | 8 cut(s) | 378, 447, 625, 637, 691, 853, 1084, 1116 |
| GsaI | CCCAGC | 1 cut(s) | 185 |
| GsuI | CTGGAG | 1 cut(s) | 725 |
| HaeII | RGCGCY | 1 cut(s) | 630 |
| HaeIII | GGCC | 8 cut(s) | 304, 501, 543, 576, 611, 659, 767, 801 |
| HapII | CCGG | 3 cut(s) | 150, 161, 618 |
| HhaI | GCGC | 9 cut(s) | 272, 274, 320, 355, 629, 1067, 1069, 1071, 1088 |
| Hin1II | CATG | 2 cut(s) | 173, 575 |
| Hin6I | GCGC | 9 cut(s) | 270, 272, 318, 353, 627, 1065, 1067, 1069, 1086 |
| HinP1I | GCGC | 9 cut(s) | 270, 272, 318, 353, 627, 1065, 1067, 1069, 1086 |
| HincII | GTYRAC | 1 cut(s) | 221 |
| HindII | GTYRAC | 1 cut(s) | 221 |
| HinfI | GANTC | 3 cut(s) | 584, 826, 1008 |
| HpaII | CCGG | 3 cut(s) | 150, 161, 618 |
| HphI | GGTGA | 3 cut(s) | 379, 429, 523 |
| Hpy166II | GTNNAC | 2 cut(s) | 221, 924 |
| Hpy188I | TCNGA | 4 cut(s) | 239, 589, 943, 1102 |
| Hpy188III | TCNNGA | 6 cut(s) | 32, 112, 341, 704, 911, 1022 |
| Hpy8I | GTNNAC | 2 cut(s) | 221, 924 |
| Hpy99I | CGWCG | 3 cut(s) | 50, 59, 222 |
| HpyAV | CCTTC | 5 cut(s) | 234, 425, 604, 899, 1046 |
| HpyCH4IV | ACGT | 1 cut(s) | 54 |
| HpyCH4V | TGCA | 4 cut(s) | 177, 683, 775, 970 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 130, 420, 633, 675, 798, 976, 1073 |
| HpyF3I | CTNAG | 4 cut(s) | 942, 1099, 1127, 1227 |
| HpySE526I | ACGT | 1 cut(s) | 54 |
| Hsp92II | CATG | 2 cut(s) | 173, 575 |
| HspAI | GCGC | 9 cut(s) | 270, 272, 318, 353, 627, 1065, 1067, 1069, 1086 |
| Ksp22I | TGATCA | 1 cut(s) | 28 |
| Kzo9I | GATC | 4 cut(s) | 28, 810, 1060, 1089 |
| LmnI | GCTCC | 4 cut(s) | 10, 644, 1051, 1150 |
| Lsp1109I | GCAGC | 2 cut(s) | 636, 1102 |
| LweI | GCATC | 4 cut(s) | 186, 784, 874, 1195 |
| MaeI | CTAG | 1 cut(s) | 789 |
| MaeII | ACGT | 1 cut(s) | 54 |
| MaeIII | GTNAC | 1 cut(s) | 143 |
| MalI | GATC | 4 cut(s) | 30, 812, 1062, 1091 |
| MauBI | CGCGCGCG | 1 cut(s) | 1065 |
| MboI | GATC | 4 cut(s) | 28, 810, 1060, 1089 |
| MboII | GAAGA | 3 cut(s) | 47, 50, 560 |
| MfeI | CAATTG | 1 cut(s) | 1181 |
| MflI | RGATCY | 1 cut(s) | 810 |
| MhlI | GDGCHC | 4 cut(s) | 88, 564, 745, 1048 |
| MlsI | TGGCCA | 3 cut(s) | 304, 501, 576 |
| MluCI | AATT | 5 cut(s) | 312, 578, 1051, 1181, 1213 |
| MluNI | TGGCCA | 3 cut(s) | 304, 501, 576 |
| MnlI | CCTC | 8 cut(s) | 245, 429, 667, 755, 912, 974, 1029, 1208 |
| Mox20I | TGGCCA | 3 cut(s) | 304, 501, 576 |
| Mph1103I | ATGCAT | 1 cut(s) | 777 |
| MscI | TGGCCA | 3 cut(s) | 304, 501, 576 |
| Msp20I | TGGCCA | 3 cut(s) | 304, 501, 576 |
| MspA1I | CMGCKG | 2 cut(s) | 90, 881 |
| MspI | CCGG | 3 cut(s) | 150, 161, 618 |
| MspR9I | CCNGG | 5 cut(s) | 249, 334, 764, 1041, 1210 |
| MunI | CAATTG | 1 cut(s) | 1181 |
| Mva1269I | GAATGC | 1 cut(s) | 379 |
| MvaI | CCWGG | 5 cut(s) | 249, 334, 764, 1041, 1210 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 130, 420, 633, 675, 798, 976, 1073 |
| NdeII | GATC | 4 cut(s) | 28, 810, 1060, 1089 |
| NlaIII | CATG | 2 cut(s) | 173, 575 |
| NmuCI | GTSAC | 1 cut(s) | 143 |
| NruI | TCGCGA | 2 cut(s) | 342, 912 |
| NsiI | ATGCAT | 1 cut(s) | 777 |
| NspV | TTCGAA | 1 cut(s) | 582 |
| PasI | CCCWGGG | 1 cut(s) | 248 |
| PauI | GCGCGC | 3 cut(s) | 270, 1065, 1067 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 51 |
| PctI | GAATGC | 1 cut(s) | 379 |
| PfeI | GAWTC | 3 cut(s) | 584, 826, 1008 |
| PflFI | GACNNNGTC | 1 cut(s) | 156 |
| PinAI | ACCGGT | 1 cut(s) | 617 |
| PkrI | GCNGC | 8 cut(s) | 379, 448, 626, 638, 692, 854, 1085, 1117 |
| PpuMI | RGGWCCY | 2 cut(s) | 232, 243 |
| Psp5II | RGGWCCY | 2 cut(s) | 232, 243 |
| Psp6I | CCWGG | 5 cut(s) | 247, 332, 762, 1039, 1208 |
| PspFI | CCCAGC | 1 cut(s) | 181 |
| PspGI | CCWGG | 5 cut(s) | 247, 332, 762, 1039, 1208 |
| PspPI | GGNCC | 5 cut(s) | 158, 232, 243, 610, 800 |
| PspPPI | RGGWCCY | 2 cut(s) | 232, 243 |
| PsuI | RGATCY | 1 cut(s) | 810 |
| PsyI | GACNNNGTC | 1 cut(s) | 156 |
| PteI | GCGCGC | 3 cut(s) | 270, 1065, 1067 |
| PvuII | CAGCTG | 1 cut(s) | 881 |
| RruI | TCGCGA | 2 cut(s) | 342, 912 |
| RsaI | GTAC | 4 cut(s) | 761, 923, 962, 996 |
| RsaNI | GTAC | 4 cut(s) | 760, 922, 961, 995 |
| SalI | GTCGAC | 1 cut(s) | 219 |
| SatI | GCNGC | 8 cut(s) | 378, 447, 625, 637, 691, 853, 1084, 1116 |
| Sau3AI | GATC | 4 cut(s) | 28, 810, 1060, 1089 |
| Sau96I | GGNCC | 5 cut(s) | 158, 232, 243, 610, 800 |
| ScaI | AGTACT | 1 cut(s) | 996 |
| ScrFI | CCNGG | 5 cut(s) | 249, 334, 764, 1041, 1210 |
| SduI | GDGCHC | 4 cut(s) | 88, 564, 745, 1048 |
| SfaNI | GCATC | 4 cut(s) | 186, 784, 874, 1195 |
| SfuI | TTCGAA | 1 cut(s) | 582 |
| SinI | GGWCC | 3 cut(s) | 158, 232, 243 |
| Sse9I | AATT | 5 cut(s) | 312, 578, 1051, 1181, 1213 |
| SspMI | CTAG | 1 cut(s) | 789 |
| StyD4I | CCNGG | 5 cut(s) | 247, 332, 762, 1039, 1208 |
| TaiI | ACGT | 1 cut(s) | 57 |
| TaqI | TCGA | 5 cut(s) | 45, 220, 283, 493, 582 |
| TasI | AATT | 5 cut(s) | 312, 578, 1051, 1181, 1213 |
| TatI | WGTACW | 1 cut(s) | 994 |
| TauI | GCSGC | 6 cut(s) | 380, 449, 639, 693, 855, 1086 |
| TfiI | GAWTC | 3 cut(s) | 584, 826, 1008 |
| TscAI | CASTG | 2 cut(s) | 738, 873 |
| TseFI | GTSAC | 1 cut(s) | 143 |
| TseI | GCWGC | 2 cut(s) | 624, 1115 |
| Tsp45I | GTSAC | 1 cut(s) | 143 |
| TspDTI | ATGAA | 2 cut(s) | 560, 1137 |
| TspGWI | ACGGA | 1 cut(s) | 97 |
| TspRI | CASTG | 2 cut(s) | 738, 873 |
| Tth111I | GACNNNGTC | 1 cut(s) | 156 |
| VpaK11BI | GGWCC | 3 cut(s) | 158, 232, 243 |
| XmiI | GTMKAC | 1 cut(s) | 220 |
| XspI | CTAG | 1 cut(s) | 789 |
| ZrmI | AGTACT | 1 cut(s) | 996 |
| Zsp2I | ATGCAT | 1 cut(s) | 777 |