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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 71 |
| AccB1I | GGYRCC | 2 cut(s) | 71, 163 |
| AccBSI | CCGCTC | 1 cut(s) | 140 |
| AccI | GTMKAC | 1 cut(s) | 506 |
| AccII | CGCG | 2 cut(s) | 355, 422 |
| AciI | CCGC | 5 cut(s) | 138, 167, 217, 261, 422 |
| AcoI | YGGCCR | 3 cut(s) | 302, 490, 568 |
| AfaI | GTAC | 2 cut(s) | 73, 203 |
| AfeI | AGCGCT | 1 cut(s) | 543 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 219, 294, 470, 527 |
| AgeI | ACCGGT | 1 cut(s) | 74 |
| AgsI | TTSAA | 1 cut(s) | 46 |
| Alw21I | GWGCWC | 2 cut(s) | 88, 322 |
| Alw26I | GTCTC | 1 cut(s) | 95 |
| Alw44I | GTGCAC | 1 cut(s) | 318 |
| Aor51HI | AGCGCT | 1 cut(s) | 543 |
| AoxI | GGCC | 6 cut(s) | 221, 302, 457, 490, 524, 568 |
| ApaLI | GTGCAC | 1 cut(s) | 318 |
| ApeKI | GCWGC | 3 cut(s) | 56, 377, 539 |
| AsiGI | ACCGGT | 1 cut(s) | 74 |
| Asp718I | GGTACC | 1 cut(s) | 71 |
| AspLEI | GCGC | 2 cut(s) | 355, 544 |
| AspS9I | GGNCC | 3 cut(s) | 158, 222, 525 |
| AsuC2I | CCSGG | 2 cut(s) | 249, 528 |
| AsuHPI | GGTGA | 4 cut(s) | 86, 134, 378, 445 |
| AvaII | GGWCC | 1 cut(s) | 158 |
| BaeGI | GKGCMC | 1 cut(s) | 322 |
| BalI | TGGCCA | 2 cut(s) | 304, 492 |
| BanI | GGYRCC | 2 cut(s) | 71, 163 |
| BbsI | GAAGAC | 1 cut(s) | 200 |
| Bbv12I | GWGCWC | 2 cut(s) | 88, 322 |
| BbvI | GCAGC | 3 cut(s) | 43, 364, 551 |
| BccI | CCATC | 9 cut(s) | 120, 200, 288, 313, 419, 458, 464, 473, 560 |
| BceAI | ACGGC | 2 cut(s) | 69, 365 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 38, 72 |
| BcnI | CCSGG | 2 cut(s) | 249, 528 |
| BcoDI | GTCTC | 1 cut(s) | 95 |
| BfaI | CTAG | 4 cut(s) | 98, 182, 230, 362 |
| BfoI | RGCGCY | 1 cut(s) | 545 |
| BglII | AGATCT | 1 cut(s) | 358 |
| BisI | GCNGC | 3 cut(s) | 57, 378, 540 |
| BlsI | GCNGC | 3 cut(s) | 58, 379, 541 |
| Bme1390I | CCNGG | 2 cut(s) | 249, 528 |
| Bme18I | GGWCC | 1 cut(s) | 158 |
| BmgT120I | GGNCC | 3 cut(s) | 158, 222, 525 |
| BmiI | GGNNCC | 4 cut(s) | 6, 73, 159, 165 |
| BmrFI | CCNGG | 2 cut(s) | 249, 528 |
| BmrI | ACTGGG | 1 cut(s) | 159 |
| BmsI | GCATC | 1 cut(s) | 178 |
| BmuI | ACTGGG | 1 cut(s) | 159 |
| BpiI | GAAGAC | 1 cut(s) | 200 |
| BpuMI | CCSGG | 2 cut(s) | 249, 528 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 468 |
| BsaI | GGTCTC | 1 cut(s) | 95 |
| BsaJI | CCNNGG | 1 cut(s) | 521 |
| BsaWI | WCCGGW | 2 cut(s) | 74, 601 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 219, 294, 470, 527 |
| Bse118I | RCCGGY | 4 cut(s) | 74, 219, 455, 570 |
| Bse1I | ACTGG | 1 cut(s) | 154 |
| BseCI | ATCGAT | 2 cut(s) | 27, 468 |
| BseDI | CCNNGG | 1 cut(s) | 521 |
| BseGI | GGATG | 1 cut(s) | 305 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 219, 294, 470, 527 |
| BseNI | ACTGG | 1 cut(s) | 154 |
| BseSI | GKGCMC | 1 cut(s) | 322 |
| BseXI | GCAGC | 3 cut(s) | 43, 364, 551 |
| Bsh1236I | CGCG | 2 cut(s) | 355, 422 |
| Bsh1285I | CGRYCG | 3 cut(s) | 31, 585, 602 |
| BshFI | GGCC | 6 cut(s) | 223, 304, 459, 492, 526, 570 |
| BshNI | GGYRCC | 2 cut(s) | 71, 163 |
| BshTI | ACCGGT | 1 cut(s) | 74 |
| BshVI | ATCGAT | 2 cut(s) | 27, 468 |
| BsiEI | CGRYCG | 3 cut(s) | 31, 585, 602 |
| BsiHKAI | GWGCWC | 2 cut(s) | 88, 322 |
| BsiSI | CCGG | 9 cut(s) | 75, 161, 220, 249, 370, 456, 528, 571, 602 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 219, 294, 470, 527 |
| BsmAI | GTCTC | 1 cut(s) | 95 |
| BsmI | GAATGC | 1 cut(s) | 90 |
| BsnI | GGCC | 6 cut(s) | 223, 304, 459, 492, 526, 570 |
| Bso31I | GGTCTC | 1 cut(s) | 95 |
| Bsp1286I | GDGCHC | 2 cut(s) | 88, 322 |
| Bsp143I | GATC | 2 cut(s) | 28, 358 |
| Bsp19I | CCATGG | 1 cut(s) | 521 |
| BspACI | CCGC | 5 cut(s) | 138, 167, 217, 261, 422 |
| BspANI | GGCC | 6 cut(s) | 223, 304, 459, 492, 526, 570 |
| BspDI | ATCGAT | 2 cut(s) | 27, 468 |
| BspFNI | CGCG | 2 cut(s) | 355, 422 |
| BspLI | GGNNCC | 4 cut(s) | 6, 73, 159, 165 |
| BspT107I | GGYRCC | 2 cut(s) | 71, 163 |
| BspTNI | GGTCTC | 1 cut(s) | 95 |
| BsrBI | CCGCTC | 1 cut(s) | 140 |
| BsrFI | RCCGGY | 4 cut(s) | 74, 219, 455, 570 |
| BsrI | ACTGG | 1 cut(s) | 154 |
| BssAI | RCCGGY | 4 cut(s) | 74, 219, 455, 570 |
| BssECI | CCNNGG | 1 cut(s) | 521 |
| BssMI | GATC | 2 cut(s) | 28, 358 |
| BssT1I | CCWWGG | 1 cut(s) | 521 |
| Bst4CI | ACNGT | 2 cut(s) | 206, 583 |
| BstC8I | GCNNGC | 4 cut(s) | 88, 221, 476, 572 |
| BstDEI | CTNAG | 1 cut(s) | 12 |
| BstDSI | CCRYGG | 1 cut(s) | 521 |
| BstF5I | GGATG | 1 cut(s) | 305 |
| BstFNI | CGCG | 2 cut(s) | 355, 422 |
| BstH2I | RGCGCY | 1 cut(s) | 545 |
| BstHHI | GCGC | 2 cut(s) | 355, 544 |
| BstKTI | GATC | 2 cut(s) | 31, 361 |
| BstMAI | GTCTC | 1 cut(s) | 95 |
| BstMBI | GATC | 2 cut(s) | 28, 358 |
| BstMCI | CGRYCG | 3 cut(s) | 31, 585, 602 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 350, 484 |
| BstSCI | CCNGG | 2 cut(s) | 247, 526 |
| BstSLI | GKGCMC | 1 cut(s) | 322 |
| BstUI | CGCG | 2 cut(s) | 355, 422 |
| BstV1I | GCAGC | 3 cut(s) | 43, 364, 551 |
| BstV2I | GAAGAC | 1 cut(s) | 200 |
| BstX2I | RGATCY | 1 cut(s) | 358 |
| BstYI | RGATCY | 1 cut(s) | 358 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 468 |
| BsuRI | GGCC | 6 cut(s) | 223, 304, 459, 492, 526, 570 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 468 |
| BtgI | CCRYGG | 1 cut(s) | 521 |
| BtgZI | GCGATG | 1 cut(s) | 178 |
| BtsCI | GGATG | 1 cut(s) | 305 |
| BtsIMutI | CAGTG | 1 cut(s) | 147 |
| Cac8I | GCNNGC | 4 cut(s) | 88, 221, 476, 572 |
| CfoI | GCGC | 2 cut(s) | 355, 544 |
| Cfr10I | RCCGGY | 4 cut(s) | 74, 219, 455, 570 |
| Cfr13I | GGNCC | 3 cut(s) | 158, 222, 525 |
| ClaI | ATCGAT | 2 cut(s) | 27, 468 |
| Csp6I | GTAC | 2 cut(s) | 72, 202 |
| CspAI | ACCGGT | 1 cut(s) | 74 |
| CviAII | CATG | 4 cut(s) | 66, 199, 488, 522 |
| CviQI | GTAC | 2 cut(s) | 72, 202 |
| DdeI | CTNAG | 1 cut(s) | 12 |
| DpnI | GATC | 2 cut(s) | 30, 360 |
| DpnII | GATC | 2 cut(s) | 28, 358 |
| EaeI | YGGCCR | 3 cut(s) | 302, 490, 568 |
| EciI | GGCGGA | 1 cut(s) | 206 |
| Eco130I | CCWWGG | 1 cut(s) | 521 |
| Eco31I | GGTCTC | 1 cut(s) | 95 |
| Eco32I | GATATC | 1 cut(s) | 442 |
| Eco47I | GGWCC | 1 cut(s) | 158 |
| Eco47III | AGCGCT | 1 cut(s) | 543 |
| EcoRV | GATATC | 1 cut(s) | 442 |
| EcoT14I | CCWWGG | 1 cut(s) | 521 |
| ErhI | CCWWGG | 1 cut(s) | 521 |
| FaeI | CATG | 4 cut(s) | 69, 202, 491, 525 |
| FaiI | YATR | 7 cut(s) | 67, 200, 483, 489, 523, 548, 558 |
| FatI | CATG | 4 cut(s) | 65, 198, 487, 521 |
| FblI | GTMKAC | 1 cut(s) | 506 |
| Fnu4HI | GCNGC | 3 cut(s) | 57, 378, 540 |
| FokI | GGATG | 1 cut(s) | 292 |
| Fsp4HI | GCNGC | 3 cut(s) | 57, 378, 540 |
| FspBI | CTAG | 4 cut(s) | 98, 182, 230, 362 |
| GlaI | GCGC | 2 cut(s) | 354, 543 |
| GluI | GCNGC | 3 cut(s) | 57, 378, 540 |
| HaeII | RGCGCY | 1 cut(s) | 545 |
| HaeIII | GGCC | 6 cut(s) | 223, 304, 459, 492, 526, 570 |
| HapII | CCGG | 9 cut(s) | 75, 161, 220, 249, 370, 456, 528, 571, 602 |
| HhaI | GCGC | 2 cut(s) | 355, 544 |
| Hin1II | CATG | 4 cut(s) | 69, 202, 491, 525 |
| Hin6I | GCGC | 2 cut(s) | 353, 542 |
| HinP1I | GCGC | 2 cut(s) | 353, 542 |
| HincII | GTYRAC | 1 cut(s) | 507 |
| HindII | GTYRAC | 1 cut(s) | 507 |
| HinfI | GANTC | 2 cut(s) | 244, 500 |
| HpaII | CCGG | 9 cut(s) | 75, 161, 220, 249, 370, 456, 528, 571, 602 |
| HphI | GGTGA | 4 cut(s) | 86, 134, 378, 445 |
| Hpy166II | GTNNAC | 2 cut(s) | 320, 507 |
| Hpy188I | TCNGA | 2 cut(s) | 63, 239 |
| Hpy188III | TCNNGA | 2 cut(s) | 32, 586 |
| Hpy8I | GTNNAC | 2 cut(s) | 320, 507 |
| Hpy99I | CGWCG | 1 cut(s) | 508 |
| HpyAV | CCTTC | 1 cut(s) | 234 |
| HpyCH4III | ACNGT | 2 cut(s) | 206, 583 |
| HpyCH4V | TGCA | 3 cut(s) | 320, 427, 487 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 350, 484 |
| HpyF3I | CTNAG | 1 cut(s) | 12 |
| Hsp92II | CATG | 4 cut(s) | 69, 202, 491, 525 |
| HspAI | GCGC | 2 cut(s) | 353, 542 |
| KpnI | GGTACC | 1 cut(s) | 75 |
| KroI | GCCGGC | 2 cut(s) | 219, 570 |
| KroNI | GCCGGC | 2 cut(s) | 221, 572 |
| Kzo9I | GATC | 2 cut(s) | 28, 358 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| Lsp1109I | GCAGC | 3 cut(s) | 43, 364, 551 |
| LweI | GCATC | 1 cut(s) | 178 |
| MaeI | CTAG | 4 cut(s) | 98, 182, 230, 362 |
| MalI | GATC | 2 cut(s) | 30, 360 |
| MbiI | CCGCTC | 1 cut(s) | 140 |
| MboI | GATC | 2 cut(s) | 28, 358 |
| MboII | GAAGA | 3 cut(s) | 47, 50, 200 |
| MflI | RGATCY | 1 cut(s) | 358 |
| MhlI | GDGCHC | 2 cut(s) | 88, 322 |
| MlsI | TGGCCA | 2 cut(s) | 304, 492 |
| MluCI | AATT | 3 cut(s) | 41, 298, 494 |
| MluNI | TGGCCA | 2 cut(s) | 304, 492 |
| MlyI | GAGTC | 2 cut(s) | 238, 494 |
| MmeI | TCCRAC | 1 cut(s) | 417 |
| MnlI | CCTC | 5 cut(s) | 245, 319, 428, 455, 598 |
| Mox20I | TGGCCA | 2 cut(s) | 304, 492 |
| MroNI | GCCGGC | 2 cut(s) | 219, 570 |
| MscI | TGGCCA | 2 cut(s) | 304, 492 |
| MslI | CAYNNNNRTG | 1 cut(s) | 197 |
| Msp20I | TGGCCA | 2 cut(s) | 304, 492 |
| MspI | CCGG | 9 cut(s) | 75, 161, 220, 249, 370, 456, 528, 571, 602 |
| MspR9I | CCNGG | 2 cut(s) | 249, 528 |
| Mva1269I | GAATGC | 1 cut(s) | 90 |
| MvnI | CGCG | 2 cut(s) | 355, 422 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 350, 484 |
| NaeI | GCCGGC | 2 cut(s) | 221, 572 |
| NciI | CCSGG | 2 cut(s) | 249, 528 |
| NcoI | CCATGG | 1 cut(s) | 521 |
| NdeII | GATC | 2 cut(s) | 28, 358 |
| NgoMIV | GCCGGC | 2 cut(s) | 219, 570 |
| NlaIII | CATG | 4 cut(s) | 69, 202, 491, 525 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 73, 159, 165 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 210 |
| PctI | GAATGC | 1 cut(s) | 90 |
| PdiI | GCCGGC | 2 cut(s) | 221, 572 |
| PfoI | TCCNGGA | 1 cut(s) | 247 |
| PinAI | ACCGGT | 1 cut(s) | 74 |
| PkrI | GCNGC | 3 cut(s) | 58, 379, 541 |
| Ple19I | CGATCG | 1 cut(s) | 31 |
| PleI | GAGTC | 2 cut(s) | 238, 494 |
| PpsI | GAGTC | 2 cut(s) | 238, 494 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 73, 159, 165 |
| PspPI | GGNCC | 3 cut(s) | 158, 222, 525 |
| PsuI | RGATCY | 1 cut(s) | 358 |
| PvuI | CGATCG | 1 cut(s) | 31 |
| RsaI | GTAC | 2 cut(s) | 73, 203 |
| RsaNI | GTAC | 2 cut(s) | 72, 202 |
| RseI | CAYNNNNRTG | 1 cut(s) | 197 |
| SalI | GTCGAC | 1 cut(s) | 505 |
| SatI | GCNGC | 3 cut(s) | 57, 378, 540 |
| Sau3AI | GATC | 2 cut(s) | 28, 358 |
| Sau96I | GGNCC | 3 cut(s) | 158, 222, 525 |
| SchI | GAGTC | 2 cut(s) | 238, 494 |
| ScrFI | CCNGG | 2 cut(s) | 249, 528 |
| SduI | GDGCHC | 2 cut(s) | 88, 322 |
| SetI | ASST | 4 cut(s) | 99, 175, 367, 537 |
| SfaNI | GCATC | 1 cut(s) | 178 |
| SinI | GGWCC | 1 cut(s) | 158 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 197 |
| SmlI | CTYRAG | 1 cut(s) | 619 |
| SmoI | CTYRAG | 1 cut(s) | 619 |
| Sse9I | AATT | 3 cut(s) | 41, 298, 494 |
| SsiI | CCGC | 5 cut(s) | 138, 167, 217, 261, 422 |
| SspMI | CTAG | 4 cut(s) | 98, 182, 230, 362 |
| StyD4I | CCNGG | 2 cut(s) | 247, 526 |
| StyI | CCWWGG | 1 cut(s) | 521 |
| TaaI | ACNGT | 2 cut(s) | 206, 583 |
| TaqI | TCGA | 6 cut(s) | 27, 115, 283, 468, 506, 517 |
| TasI | AATT | 3 cut(s) | 41, 298, 494 |
| TscAI | CASTG | 1 cut(s) | 154 |
| TseI | GCWGC | 3 cut(s) | 56, 377, 539 |
| TspDTI | ATGAA | 1 cut(s) | 545 |
| TspGWI | ACGGA | 1 cut(s) | 119 |
| TspRI | CASTG | 1 cut(s) | 154 |
| VneI | GTGCAC | 1 cut(s) | 318 |
| VpaK11BI | GGWCC | 1 cut(s) | 158 |
| XmiI | GTMKAC | 1 cut(s) | 506 |
| XspI | CTAG | 4 cut(s) | 98, 182, 230, 362 |