Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 364 |
| AccI | GTMKAC | 2 cut(s) | 135, 475 |
| AccII | CGCG | 3 cut(s) | 180, 240, 362 |
| AciI | CCGC | 8 cut(s) | 25, 172, 194, 228, 276, 298, 362, 404 |
| AcsI | RAATTY | 3 cut(s) | 219, 398, 463 |
| AfaI | GTAC | 1 cut(s) | 143 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 166 |
| AgsI | TTSAA | 2 cut(s) | 218, 377 |
| AjnI | CCWGG | 1 cut(s) | 223 |
| Alw26I | GTCTC | 1 cut(s) | 57 |
| Ama87I | CYCGRG | 2 cut(s) | 159, 509 |
| AoxI | GGCC | 8 cut(s) | 3, 76, 110, 168, 229, 255, 346, 379 |
| ApeKI | GCWGC | 1 cut(s) | 406 |
| ApoI | RAATTY | 3 cut(s) | 219, 398, 463 |
| AspLEI | GCGC | 4 cut(s) | 16, 180, 182, 242 |
| AspS9I | GGNCC | 4 cut(s) | 76, 111, 169, 346 |
| AsuC2I | CCSGG | 2 cut(s) | 38, 493 |
| AvaI | CYCGRG | 2 cut(s) | 159, 509 |
| BaeGI | GKGCMC | 1 cut(s) | 160 |
| BanI | GGYRCC | 1 cut(s) | 364 |
| BbsI | GAAGAC | 1 cut(s) | 206 |
| BbvI | GCAGC | 1 cut(s) | 393 |
| BccI | CCATC | 3 cut(s) | 29, 41, 362 |
| BceAI | ACGGC | 2 cut(s) | 12, 236 |
| BciT130I | CCWGG | 1 cut(s) | 225 |
| BcnI | CCSGG | 2 cut(s) | 38, 493 |
| BcoDI | GTCTC | 1 cut(s) | 57 |
| BfmI | CTRYAG | 2 cut(s) | 407, 469 |
| BglII | AGATCT | 1 cut(s) | 443 |
| BisI | GCNGC | 3 cut(s) | 229, 363, 407 |
| BlsI | GCNGC | 3 cut(s) | 230, 364, 408 |
| Bme1390I | CCNGG | 3 cut(s) | 38, 225, 493 |
| BmeT110I | CYCGRG | 2 cut(s) | 159, 509 |
| BmgT120I | GGNCC | 4 cut(s) | 76, 111, 169, 346 |
| BmiI | GGNNCC | 2 cut(s) | 77, 366 |
| BmrFI | CCNGG | 3 cut(s) | 38, 225, 493 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BoxI | GACNNNNGTC | 1 cut(s) | 210 |
| BpiI | GAAGAC | 1 cut(s) | 206 |
| BpuMI | CCSGG | 2 cut(s) | 38, 493 |
| BsaI | GGTCTC | 1 cut(s) | 57 |
| BsaJI | CCNNGG | 2 cut(s) | 252, 492 |
| BsaWI | WCCGGW | 1 cut(s) | 48 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 166 |
| Bse1I | ACTGG | 2 cut(s) | 143, 427 |
| Bse3DI | GCAATG | 1 cut(s) | 189 |
| BseBI | CCWGG | 1 cut(s) | 225 |
| BseDI | CCNNGG | 2 cut(s) | 252, 492 |
| BseGI | GGATG | 4 cut(s) | 21, 33, 202, 354 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BseMI | GCAATG | 1 cut(s) | 189 |
| BseMII | CTCAG | 1 cut(s) | 431 |
| BseNI | ACTGG | 2 cut(s) | 143, 427 |
| BsePI | GCGCGC | 1 cut(s) | 178 |
| BseRI | GAGGAG | 1 cut(s) | 234 |
| BseSI | GKGCMC | 1 cut(s) | 160 |
| BseXI | GCAGC | 1 cut(s) | 393 |
| Bsh1236I | CGCG | 3 cut(s) | 180, 240, 362 |
| BshFI | GGCC | 8 cut(s) | 5, 78, 112, 170, 231, 257, 348, 381 |
| BshNI | GGYRCC | 1 cut(s) | 364 |
| BsiHKCI | CYCGRG | 2 cut(s) | 159, 509 |
| BsiSI | CCGG | 3 cut(s) | 38, 49, 492 |
| BslFI | GGGAC | 1 cut(s) | 15 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BsmAI | GTCTC | 1 cut(s) | 57 |
| BsmFI | GGGAC | 1 cut(s) | 15 |
| BsmI | GAATGC | 1 cut(s) | 432 |
| BsnI | GGCC | 8 cut(s) | 5, 78, 112, 170, 231, 257, 348, 381 |
| Bso31I | GGTCTC | 1 cut(s) | 57 |
| BsoBI | CYCGRG | 2 cut(s) | 159, 509 |
| Bsp1286I | GDGCHC | 1 cut(s) | 160 |
| Bsp143I | GATC | 2 cut(s) | 61, 443 |
| BspACI | CCGC | 8 cut(s) | 25, 172, 194, 228, 276, 298, 362, 404 |
| BspANI | GGCC | 8 cut(s) | 5, 78, 112, 170, 231, 257, 348, 381 |
| BspCNI | CTCAG | 1 cut(s) | 430 |
| BspFNI | CGCG | 3 cut(s) | 180, 240, 362 |
| BspHI | TCATGA | 1 cut(s) | 481 |
| BspLI | GGNNCC | 2 cut(s) | 77, 366 |
| BspMAI | CTGCAG | 1 cut(s) | 411 |
| BspQI | GCTCTTC | 1 cut(s) | 48 |
| BspT107I | GGYRCC | 1 cut(s) | 364 |
| BspTNI | GGTCTC | 1 cut(s) | 57 |
| BsrDI | GCAATG | 1 cut(s) | 189 |
| BsrI | ACTGG | 2 cut(s) | 143, 427 |
| BssECI | CCNNGG | 2 cut(s) | 252, 492 |
| BssHII | GCGCGC | 1 cut(s) | 178 |
| BssMI | GATC | 2 cut(s) | 61, 443 |
| Bst2UI | CCWGG | 1 cut(s) | 225 |
| Bst4CI | ACNGT | 2 cut(s) | 369, 473 |
| Bst6I | CTCTTC | 1 cut(s) | 48 |
| BstC8I | GCNNGC | 4 cut(s) | 172, 176, 180, 280 |
| BstDEI | CTNAG | 1 cut(s) | 417 |
| BstDSI | CCRYGG | 1 cut(s) | 252 |
| BstF5I | GGATG | 4 cut(s) | 21, 33, 202, 354 |
| BstFNI | CGCG | 3 cut(s) | 180, 240, 362 |
| BstHHI | GCGC | 4 cut(s) | 16, 180, 182, 242 |
| BstKTI | GATC | 2 cut(s) | 64, 446 |
| BstMAI | GTCTC | 1 cut(s) | 57 |
| BstMBI | GATC | 2 cut(s) | 61, 443 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 11, 186, 237, 248, 438 |
| BstNI | CCWGG | 1 cut(s) | 225 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 210 |
| BstSCI | CCNGG | 3 cut(s) | 36, 223, 491 |
| BstSFI | CTRYAG | 2 cut(s) | 407, 469 |
| BstSLI | GKGCMC | 1 cut(s) | 160 |
| BstUI | CGCG | 3 cut(s) | 180, 240, 362 |
| BstV1I | GCAGC | 1 cut(s) | 393 |
| BstV2I | GAAGAC | 1 cut(s) | 206 |
| BstX2I | RGATCY | 1 cut(s) | 443 |
| BstYI | RGATCY | 1 cut(s) | 443 |
| BsuRI | GGCC | 8 cut(s) | 5, 78, 112, 170, 231, 257, 348, 381 |
| BtgI | CCRYGG | 1 cut(s) | 252 |
| BtsCI | GGATG | 4 cut(s) | 21, 33, 202, 354 |
| Cac8I | GCNNGC | 4 cut(s) | 172, 176, 180, 280 |
| CciI | TCATGA | 1 cut(s) | 481 |
| CfoI | GCGC | 4 cut(s) | 16, 180, 182, 242 |
| Cfr13I | GGNCC | 4 cut(s) | 76, 111, 169, 346 |
| Csp6I | GTAC | 1 cut(s) | 142 |
| CviAII | CATG | 1 cut(s) | 482 |
| CviJI | RGCY | 9 cut(s) | 5, 41, 78, 112, 170, 231, 257, 348, 381 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 41, 78, 112, 170, 231, 257, 348, 381 |
| CviQI | GTAC | 1 cut(s) | 142 |
| DdeI | CTNAG | 1 cut(s) | 417 |
| DpnI | GATC | 2 cut(s) | 63, 445 |
| DpnII | GATC | 2 cut(s) | 61, 443 |
| Eam1104I | CTCTTC | 1 cut(s) | 48 |
| EarI | CTCTTC | 1 cut(s) | 48 |
| EciI | GGCGGA | 1 cut(s) | 14 |
| Eco31I | GGTCTC | 1 cut(s) | 57 |
| Eco88I | CYCGRG | 2 cut(s) | 159, 509 |
| EcoRII | CCWGG | 1 cut(s) | 223 |
| FaeI | CATG | 1 cut(s) | 485 |
| FaiI | YATR | 6 cut(s) | 12, 90, 268, 372, 438, 483 |
| FaqI | GGGAC | 1 cut(s) | 15 |
| FatI | CATG | 1 cut(s) | 481 |
| FauI | CCCGC | 2 cut(s) | 179, 411 |
| FblI | GTMKAC | 2 cut(s) | 135, 475 |
| Fnu4HI | GCNGC | 3 cut(s) | 229, 363, 407 |
| FokI | GGATG | 4 cut(s) | 8, 20, 209, 341 |
| Fsp4HI | GCNGC | 3 cut(s) | 229, 363, 407 |
| GlaI | GCGC | 4 cut(s) | 15, 179, 181, 241 |
| GluI | GCNGC | 3 cut(s) | 229, 363, 407 |
| HaeIII | GGCC | 8 cut(s) | 5, 78, 112, 170, 231, 257, 348, 381 |
| HapII | CCGG | 3 cut(s) | 38, 49, 492 |
| HhaI | GCGC | 4 cut(s) | 16, 180, 182, 242 |
| Hin1II | CATG | 1 cut(s) | 485 |
| Hin6I | GCGC | 4 cut(s) | 14, 178, 180, 240 |
| HinP1I | GCGC | 4 cut(s) | 14, 178, 180, 240 |
| HinfI | GANTC | 2 cut(s) | 93, 415 |
| HpaII | CCGG | 3 cut(s) | 38, 49, 492 |
| Hpy166II | GTNNAC | 2 cut(s) | 136, 476 |
| Hpy188I | TCNGA | 1 cut(s) | 420 |
| Hpy188III | TCNNGA | 2 cut(s) | 128, 482 |
| Hpy8I | GTNNAC | 2 cut(s) | 136, 476 |
| HpyAV | CCTTC | 1 cut(s) | 514 |
| HpyCH4III | ACNGT | 2 cut(s) | 369, 473 |
| HpyCH4V | TGCA | 1 cut(s) | 409 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 11, 186, 237, 248, 438 |
| HpyF3I | CTNAG | 1 cut(s) | 417 |
| Hsp92II | CATG | 1 cut(s) | 485 |
| HspAI | GCGC | 4 cut(s) | 14, 178, 180, 240 |
| Kzo9I | GATC | 2 cut(s) | 61, 443 |
| LguI | GCTCTTC | 1 cut(s) | 48 |
| LmnI | GCTCC | 1 cut(s) | 247 |
| Lsp1109I | GCAGC | 1 cut(s) | 393 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeIII | GTNAC | 1 cut(s) | 425 |
| MalI | GATC | 2 cut(s) | 63, 445 |
| MboI | GATC | 2 cut(s) | 61, 443 |
| MboII | GAAGA | 2 cut(s) | 35, 206 |
| MflI | RGATCY | 1 cut(s) | 443 |
| MhlI | GDGCHC | 1 cut(s) | 160 |
| MluCI | AATT | 6 cut(s) | 99, 219, 383, 398, 463, 498 |
| MlyI | GAGTC | 2 cut(s) | 102, 409 |
| MmeI | TCCRAC | 1 cut(s) | 145 |
| MnlI | CCTC | 5 cut(s) | 62, 124, 135, 142, 255 |
| MseI | TTAA | 1 cut(s) | 234 |
| MspA1I | CMGCKG | 2 cut(s) | 174, 406 |
| MspI | CCGG | 3 cut(s) | 38, 49, 492 |
| MspR9I | CCNGG | 3 cut(s) | 38, 225, 493 |
| Mva1269I | GAATGC | 1 cut(s) | 432 |
| MvaI | CCWGG | 1 cut(s) | 225 |
| MvnI | CGCG | 3 cut(s) | 180, 240, 362 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 11, 186, 237, 248, 438 |
| NciI | CCSGG | 2 cut(s) | 38, 493 |
| NdeII | GATC | 2 cut(s) | 61, 443 |
| NlaIII | CATG | 1 cut(s) | 485 |
| NlaIV | GGNNCC | 2 cut(s) | 77, 366 |
| NmuCI | GTSAC | 1 cut(s) | 425 |
| PaeR7I | CTCGAG | 1 cut(s) | 509 |
| PagI | TCATGA | 1 cut(s) | 481 |
| PauI | GCGCGC | 1 cut(s) | 178 |
| PciSI | GCTCTTC | 1 cut(s) | 48 |
| PctI | GAATGC | 1 cut(s) | 432 |
| PkrI | GCNGC | 3 cut(s) | 230, 364, 408 |
| PleI | GAGTC | 2 cut(s) | 101, 409 |
| PpsI | GAGTC | 2 cut(s) | 101, 409 |
| PshAI | GACNNNNGTC | 1 cut(s) | 210 |
| Psp6I | CCWGG | 1 cut(s) | 223 |
| PspGI | CCWGG | 1 cut(s) | 223 |
| PspN4I | GGNNCC | 2 cut(s) | 77, 366 |
| PspPI | GGNCC | 4 cut(s) | 76, 111, 169, 346 |
| PspXI | VCTCGAGB | 1 cut(s) | 509 |
| PstI | CTGCAG | 1 cut(s) | 411 |
| PsuI | RGATCY | 1 cut(s) | 443 |
| PteI | GCGCGC | 1 cut(s) | 178 |
| RsaI | GTAC | 1 cut(s) | 143 |
| RsaNI | GTAC | 1 cut(s) | 142 |
| SapI | GCTCTTC | 1 cut(s) | 48 |
| SaqAI | TTAA | 1 cut(s) | 234 |
| SatI | GCNGC | 3 cut(s) | 229, 363, 407 |
| Sau3AI | GATC | 2 cut(s) | 61, 443 |
| Sau96I | GGNCC | 4 cut(s) | 76, 111, 169, 346 |
| SchI | GAGTC | 2 cut(s) | 102, 409 |
| ScrFI | CCNGG | 3 cut(s) | 38, 225, 493 |
| SduI | GDGCHC | 1 cut(s) | 160 |
| SetI | ASST | 3 cut(s) | 73, 127, 153 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SfcI | CTRYAG | 2 cut(s) | 407, 469 |
| Sfr274I | CTCGAG | 1 cut(s) | 509 |
| SlaI | CTCGAG | 1 cut(s) | 509 |
| SmlI | CTYRAG | 1 cut(s) | 509 |
| SmoI | CTYRAG | 1 cut(s) | 509 |
| Sse9I | AATT | 6 cut(s) | 99, 219, 383, 398, 463, 498 |
| SsiI | CCGC | 8 cut(s) | 25, 172, 194, 228, 276, 298, 362, 404 |
| StyD4I | CCNGG | 3 cut(s) | 36, 223, 491 |
| TaaI | ACNGT | 2 cut(s) | 369, 473 |
| TaqI | TCGA | 1 cut(s) | 510 |
| TasI | AATT | 6 cut(s) | 99, 219, 383, 398, 463, 498 |
| TauI | GCSGC | 2 cut(s) | 231, 365 |
| Tru1I | TTAA | 1 cut(s) | 234 |
| Tru9I | TTAA | 1 cut(s) | 234 |
| TseFI | GTSAC | 1 cut(s) | 425 |
| TseI | GCWGC | 1 cut(s) | 406 |
| Tsp45I | GTSAC | 1 cut(s) | 425 |
| TspDTI | ATGAA | 1 cut(s) | 425 |
| XapI | RAATTY | 3 cut(s) | 219, 398, 463 |
| XhoI | CTCGAG | 1 cut(s) | 509 |
| XmiI | GTMKAC | 2 cut(s) | 135, 475 |