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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 410 |
| AccB1I | GGYRCC | 1 cut(s) | 83 |
| AccBSI | CCGCTC | 1 cut(s) | 241 |
| AccII | CGCG | 3 cut(s) | 198, 446, 804 |
| AccIII | TCCGGA | 1 cut(s) | 859 |
| AciI | CCGC | 9 cut(s) | 88, 91, 239, 267, 291, 564, 596, 736, 802 |
| AclWI | GGATC | 3 cut(s) | 161, 187, 475 |
| AcoI | YGGCCR | 6 cut(s) | 264, 320, 396, 476, 597, 799 |
| AcsI | RAATTY | 1 cut(s) | 544 |
| AcyI | GRCGYC | 2 cut(s) | 407, 449 |
| AfaI | GTAC | 3 cut(s) | 559, 815, 854 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 245, 361, 585, 647 |
| AgeI | ACCGGT | 3 cut(s) | 439, 509, 578 |
| AgsI | TTSAA | 2 cut(s) | 436, 694 |
| AjnI | CCWGG | 1 cut(s) | 145 |
| AleI | CACNNNNGTG | 1 cut(s) | 339 |
| AluBI | AGCT | 3 cut(s) | 462, 765, 782 |
| AluI | AGCT | 3 cut(s) | 462, 765, 782 |
| Alw21I | GWGCWC | 1 cut(s) | 464 |
| Alw26I | GTCTC | 1 cut(s) | 635 |
| AlwI | GGATC | 3 cut(s) | 161, 187, 475 |
| Aor13HI | TCCGGA | 1 cut(s) | 859 |
| AoxI | GGCC | 8 cut(s) | 148, 264, 320, 396, 476, 597, 603, 799 |
| ApeKI | GCWGC | 2 cut(s) | 56, 762 |
| ApoI | RAATTY | 1 cut(s) | 544 |
| AsiGI | ACCGGT | 3 cut(s) | 439, 509, 578 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 253 |
| AspS9I | GGNCC | 3 cut(s) | 159, 604, 710 |
| AsuC2I | CCSGG | 1 cut(s) | 314 |
| AsuHPI | GGTGA | 1 cut(s) | 344 |
| AsuNHI | GCTAGC | 1 cut(s) | 293 |
| AvaII | GGWCC | 2 cut(s) | 159, 710 |
| BaeGI | GKGCMC | 1 cut(s) | 88 |
| BalI | TGGCCA | 1 cut(s) | 398 |
| BanI | GGYRCC | 1 cut(s) | 83 |
| BanII | GRGCYC | 1 cut(s) | 464 |
| Bbv12I | GWGCWC | 1 cut(s) | 464 |
| BbvI | GCAGC | 2 cut(s) | 43, 774 |
| BccI | CCATC | 2 cut(s) | 363, 468 |
| BceAI | ACGGC | 5 cut(s) | 118, 471, 618, 631, 640 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 38, 72, 286, 320 |
| BciT130I | CCWGG | 1 cut(s) | 147 |
| BciVI | GTATCC | 1 cut(s) | 713 |
| BcnI | CCSGG | 1 cut(s) | 314 |
| BcoDI | GTCTC | 1 cut(s) | 635 |
| BfaI | CTAG | 1 cut(s) | 294 |
| BfuI | GTATCC | 1 cut(s) | 713 |
| BisI | GCNGC | 6 cut(s) | 57, 91, 267, 597, 763, 802 |
| BlsI | GCNGC | 6 cut(s) | 58, 92, 268, 598, 764, 803 |
| Bme1390I | CCNGG | 2 cut(s) | 147, 314 |
| Bme18I | GGWCC | 2 cut(s) | 159, 710 |
| BmgT120I | GGNCC | 3 cut(s) | 159, 604, 710 |
| BmiI | GGNNCC | 6 cut(s) | 6, 73, 85, 106, 160, 712 |
| BmrFI | CCNGG | 2 cut(s) | 147, 314 |
| BmsI | GCATC | 4 cut(s) | 87, 340, 672, 694 |
| BmtI | GCTAGC | 1 cut(s) | 297 |
| BpmI | CTGGAG | 1 cut(s) | 129 |
| BpuMI | CCSGG | 1 cut(s) | 314 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaBI | GATNNNNATC | 1 cut(s) | 330 |
| BsaHI | GRCGYC | 2 cut(s) | 407, 449 |
| BsaI | GGTCTC | 1 cut(s) | 635 |
| BsaJI | CCNNGG | 3 cut(s) | 453, 492, 600 |
| BsaWI | WCCGGW | 4 cut(s) | 439, 509, 578, 859 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 118, 148 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 245, 361, 585, 647 |
| Bse118I | RCCGGY | 7 cut(s) | 262, 439, 509, 534, 578, 698, 746 |
| Bse8I | GATNNNNATC | 1 cut(s) | 330 |
| BseAI | TCCGGA | 1 cut(s) | 859 |
| BseBI | CCWGG | 1 cut(s) | 147 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 3 cut(s) | 453, 492, 600 |
| BseGI | GGATG | 3 cut(s) | 331, 685, 868 |
| BseJI | GATNNNNATC | 1 cut(s) | 330 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 245, 361, 585, 647 |
| BseSI | GKGCMC | 1 cut(s) | 88 |
| BseX3I | CGGCCG | 2 cut(s) | 264, 799 |
| BseXI | GCAGC | 2 cut(s) | 43, 774 |
| Bsh1236I | CGCG | 3 cut(s) | 198, 446, 804 |
| Bsh1285I | CGRYCG | 5 cut(s) | 267, 444, 510, 622, 802 |
| BshFI | GGCC | 8 cut(s) | 150, 266, 322, 398, 478, 599, 605, 801 |
| BshNI | GGYRCC | 1 cut(s) | 83 |
| BshTI | ACCGGT | 3 cut(s) | 439, 509, 578 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 5 cut(s) | 267, 444, 510, 622, 802 |
| BsiHKAI | GWGCWC | 1 cut(s) | 464 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 245, 361, 585, 647 |
| BsmAI | GTCTC | 1 cut(s) | 635 |
| BsmI | GAATGC | 1 cut(s) | 842 |
| BsnI | GGCC | 8 cut(s) | 150, 266, 322, 398, 478, 599, 605, 801 |
| Bso31I | GGTCTC | 1 cut(s) | 635 |
| Bsp1286I | GDGCHC | 2 cut(s) | 88, 464 |
| Bsp13I | TCCGGA | 1 cut(s) | 859 |
| Bsp143I | GATC | 5 cut(s) | 28, 153, 179, 480, 619 |
| Bsp68I | TCGCGA | 1 cut(s) | 446 |
| BspACI | CCGC | 9 cut(s) | 88, 91, 239, 267, 291, 564, 596, 736, 802 |
| BspANI | GGCC | 8 cut(s) | 150, 266, 322, 398, 478, 599, 605, 801 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspEI | TCCGGA | 1 cut(s) | 859 |
| BspFNI | CGCG | 3 cut(s) | 198, 446, 804 |
| BspLI | GGNNCC | 6 cut(s) | 6, 73, 85, 106, 160, 712 |
| BspOI | GCTAGC | 1 cut(s) | 297 |
| BspPI | GGATC | 3 cut(s) | 161, 187, 475 |
| BspT107I | GGYRCC | 1 cut(s) | 83 |
| BspTNI | GGTCTC | 1 cut(s) | 635 |
| BsrBI | CCGCTC | 1 cut(s) | 241 |
| BsrFI | RCCGGY | 7 cut(s) | 262, 439, 509, 534, 578, 698, 746 |
| BssAI | RCCGGY | 7 cut(s) | 262, 439, 509, 534, 578, 698, 746 |
| BssECI | CCNNGG | 3 cut(s) | 453, 492, 600 |
| BssMI | GATC | 5 cut(s) | 28, 153, 179, 480, 619 |
| BssNI | GRCGYC | 2 cut(s) | 407, 449 |
| Bst2UI | CCWGG | 1 cut(s) | 147 |
| BstACI | GRCGYC | 2 cut(s) | 407, 449 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 503 |
| BstC8I | GCNNGC | 6 cut(s) | 88, 295, 460, 540, 653, 748 |
| BstDEI | CTNAG | 1 cut(s) | 12 |
| BstDSI | CCRYGG | 2 cut(s) | 453, 600 |
| BstF5I | GGATG | 3 cut(s) | 331, 685, 868 |
| BstFNI | CGCG | 3 cut(s) | 198, 446, 804 |
| BstKTI | GATC | 5 cut(s) | 31, 156, 182, 483, 622 |
| BstMAI | GTCTC | 1 cut(s) | 635 |
| BstMBI | GATC | 5 cut(s) | 28, 153, 179, 480, 619 |
| BstMCI | CGRYCG | 5 cut(s) | 267, 444, 510, 622, 802 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 328, 503, 602 |
| BstNI | CCWGG | 1 cut(s) | 147 |
| BstSCI | CCNGG | 2 cut(s) | 145, 312 |
| BstSLI | GKGCMC | 1 cut(s) | 88 |
| BstUI | CGCG | 3 cut(s) | 198, 446, 804 |
| BstV1I | GCAGC | 2 cut(s) | 43, 774 |
| BstX2I | RGATCY | 1 cut(s) | 179 |
| BstYI | RGATCY | 1 cut(s) | 179 |
| BstZI | CGGCCG | 2 cut(s) | 264, 799 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuI | GTATCC | 1 cut(s) | 713 |
| BsuRI | GGCC | 8 cut(s) | 150, 266, 322, 398, 478, 599, 605, 801 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgI | CCRYGG | 2 cut(s) | 453, 600 |
| BtsCI | GGATG | 3 cut(s) | 331, 685, 868 |
| BtuMI | TCGCGA | 1 cut(s) | 446 |
| Cac8I | GCNNGC | 6 cut(s) | 88, 295, 460, 540, 653, 748 |
| Cfr10I | RCCGGY | 7 cut(s) | 262, 439, 509, 534, 578, 698, 746 |
| Cfr13I | GGNCC | 3 cut(s) | 159, 604, 710 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CseI | GACGC | 1 cut(s) | 457 |
| Csp6I | GTAC | 3 cut(s) | 558, 814, 853 |
| CspAI | ACCGGT | 3 cut(s) | 439, 509, 578 |
| CviAII | CATG | 2 cut(s) | 394, 429 |
| CviQI | GTAC | 3 cut(s) | 558, 814, 853 |
| DdeI | CTNAG | 1 cut(s) | 12 |
| DpnI | GATC | 5 cut(s) | 30, 155, 181, 482, 621 |
| DpnII | GATC | 5 cut(s) | 28, 153, 179, 480, 619 |
| EaeI | YGGCCR | 6 cut(s) | 264, 320, 396, 476, 597, 799 |
| EagI | CGGCCG | 2 cut(s) | 264, 799 |
| EciI | GGCGGA | 1 cut(s) | 553 |
| Ecl136II | GAGCTC | 1 cut(s) | 462 |
| EclXI | CGGCCG | 2 cut(s) | 264, 799 |
| Eco24I | GRGCYC | 1 cut(s) | 464 |
| Eco31I | GGTCTC | 1 cut(s) | 635 |
| Eco47I | GGWCC | 2 cut(s) | 159, 710 |
| Eco52I | CGGCCG | 2 cut(s) | 264, 799 |
| Eco53kI | GAGCTC | 1 cut(s) | 462 |
| EcoICRI | GAGCTC | 1 cut(s) | 462 |
| EcoO109I | RGGNCCY | 1 cut(s) | 159 |
| EcoRII | CCWGG | 1 cut(s) | 145 |
| EcoT22I | ATGCAT | 1 cut(s) | 687 |
| EcoT38I | GRGCYC | 1 cut(s) | 464 |
| FaeI | CATG | 2 cut(s) | 397, 432 |
| FaiI | YATR | 7 cut(s) | 63, 224, 389, 395, 430, 644, 828 |
| FatI | CATG | 2 cut(s) | 393, 428 |
| FauI | CCCGC | 3 cut(s) | 95, 246, 743 |
| Fnu4HI | GCNGC | 6 cut(s) | 57, 91, 267, 597, 763, 802 |
| FokI | GGATG | 3 cut(s) | 338, 672, 875 |
| FriOI | GRGCYC | 1 cut(s) | 464 |
| Fsp4HI | GCNGC | 6 cut(s) | 57, 91, 267, 597, 763, 802 |
| FspBI | CTAG | 1 cut(s) | 294 |
| GluI | GCNGC | 6 cut(s) | 57, 91, 267, 597, 763, 802 |
| GsuI | CTGGAG | 1 cut(s) | 129 |
| HaeIII | GGCC | 8 cut(s) | 150, 266, 322, 398, 478, 599, 605, 801 |
| HgaI | GACGC | 1 cut(s) | 457 |
| Hin1I | GRCGYC | 2 cut(s) | 407, 449 |
| Hin1II | CATG | 2 cut(s) | 397, 432 |
| HincII | GTYRAC | 1 cut(s) | 414 |
| HindII | GTYRAC | 1 cut(s) | 414 |
| HphI | GGTGA | 1 cut(s) | 344 |
| Hpy166II | GTNNAC | 3 cut(s) | 344, 414, 816 |
| Hpy188I | TCNGA | 5 cut(s) | 109, 285, 493, 635, 719 |
| Hpy188III | TCNNGA | 6 cut(s) | 32, 445, 679, 694, 833, 860 |
| Hpy8I | GTNNAC | 3 cut(s) | 344, 414, 816 |
| Hpy99I | CGWCG | 5 cut(s) | 379, 409, 412, 451, 780 |
| HpyAV | CCTTC | 8 cut(s) | 46, 141, 178, 194, 313, 700, 724, 866 |
| HpyCH4IV | ACGT | 1 cut(s) | 407 |
| HpyCH4V | TGCA | 4 cut(s) | 393, 426, 663, 685 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 328, 503, 602 |
| HpyF3I | CTNAG | 1 cut(s) | 12 |
| HpySE526I | ACGT | 1 cut(s) | 407 |
| Hsp92I | GRCGYC | 2 cut(s) | 407, 449 |
| Hsp92II | CATG | 2 cut(s) | 397, 432 |
| Kpn2I | TCCGGA | 1 cut(s) | 859 |
| KroI | GCCGGC | 1 cut(s) | 746 |
| KroNI | GCCGGC | 1 cut(s) | 748 |
| Kzo9I | GATC | 5 cut(s) | 28, 153, 179, 480, 619 |
| LmnI | GCTCC | 4 cut(s) | 10, 110, 467, 770 |
| Lsp1109I | GCAGC | 2 cut(s) | 43, 774 |
| LweI | GCATC | 4 cut(s) | 87, 340, 672, 694 |
| MaeI | CTAG | 1 cut(s) | 294 |
| MaeII | ACGT | 1 cut(s) | 407 |
| MaeIII | GTNAC | 1 cut(s) | 676 |
| MalI | GATC | 5 cut(s) | 30, 155, 181, 482, 621 |
| MbiI | CCGCTC | 1 cut(s) | 241 |
| MboI | GATC | 5 cut(s) | 28, 153, 179, 480, 619 |
| MboII | GAAGA | 1 cut(s) | 50 |
| MflI | RGATCY | 1 cut(s) | 179 |
| MhlI | GDGCHC | 2 cut(s) | 88, 464 |
| MlsI | TGGCCA | 1 cut(s) | 398 |
| MluCI | AATT | 3 cut(s) | 400, 544, 724 |
| MluNI | TGGCCA | 1 cut(s) | 398 |
| MmeI | TCCRAC | 1 cut(s) | 132 |
| Mox20I | TGGCCA | 1 cut(s) | 398 |
| Mph1103I | ATGCAT | 1 cut(s) | 687 |
| MroI | TCCGGA | 1 cut(s) | 859 |
| MroNI | GCCGGC | 1 cut(s) | 746 |
| MroXI | GAANNNNTTC | 1 cut(s) | 253 |
| MscI | TGGCCA | 1 cut(s) | 398 |
| MslI | CAYNNNNRTG | 2 cut(s) | 221, 339 |
| Msp20I | TGGCCA | 1 cut(s) | 398 |
| MspR9I | CCNGG | 2 cut(s) | 147, 314 |
| Mva1269I | GAATGC | 1 cut(s) | 842 |
| MvaI | CCWGG | 1 cut(s) | 147 |
| MvnI | CGCG | 3 cut(s) | 198, 446, 804 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 328, 503, 602 |
| NaeI | GCCGGC | 1 cut(s) | 748 |
| NciI | CCSGG | 1 cut(s) | 314 |
| NdeII | GATC | 5 cut(s) | 28, 153, 179, 480, 619 |
| NgoMIV | GCCGGC | 1 cut(s) | 746 |
| NheI | GCTAGC | 1 cut(s) | 293 |
| NlaIII | CATG | 2 cut(s) | 397, 432 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 73, 85, 106, 160, 712 |
| NmeAIII | GCCGAG | 1 cut(s) | 777 |
| NmuCI | GTSAC | 1 cut(s) | 676 |
| NruI | TCGCGA | 1 cut(s) | 446 |
| NsiI | ATGCAT | 1 cut(s) | 687 |
| OliI | CACNNNNGTG | 1 cut(s) | 339 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 455 |
| PctI | GAATGC | 1 cut(s) | 842 |
| PdiI | GCCGGC | 1 cut(s) | 748 |
| PdmI | GAANNNNTTC | 1 cut(s) | 253 |
| PflFI | GACNNNGTC | 1 cut(s) | 409 |
| PinAI | ACCGGT | 3 cut(s) | 439, 509, 578 |
| PkrI | GCNGC | 6 cut(s) | 58, 92, 268, 598, 764, 803 |
| Ple19I | CGATCG | 1 cut(s) | 622 |
| PpuMI | RGGWCCY | 1 cut(s) | 159 |
| Psp124BI | GAGCTC | 1 cut(s) | 464 |
| Psp5II | RGGWCCY | 1 cut(s) | 159 |
| Psp6I | CCWGG | 1 cut(s) | 145 |
| PspGI | CCWGG | 1 cut(s) | 145 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 73, 85, 106, 160, 712 |
| PspPI | GGNCC | 3 cut(s) | 159, 604, 710 |
| PspPPI | RGGWCCY | 1 cut(s) | 159 |
| PsuI | RGATCY | 1 cut(s) | 179 |
| PsyI | GACNNNGTC | 1 cut(s) | 409 |
| PvuI | CGATCG | 1 cut(s) | 622 |
| RruI | TCGCGA | 1 cut(s) | 446 |
| RsaI | GTAC | 3 cut(s) | 559, 815, 854 |
| RsaNI | GTAC | 3 cut(s) | 558, 814, 853 |
| RseI | CAYNNNNRTG | 2 cut(s) | 221, 339 |
| SacI | GAGCTC | 1 cut(s) | 464 |
| SatI | GCNGC | 6 cut(s) | 57, 91, 267, 597, 763, 802 |
| Sau3AI | GATC | 5 cut(s) | 28, 153, 179, 480, 619 |
| Sau96I | GGNCC | 3 cut(s) | 159, 604, 710 |
| ScrFI | CCNGG | 2 cut(s) | 147, 314 |
| SduI | GDGCHC | 2 cut(s) | 88, 464 |
| SfaNI | GCATC | 4 cut(s) | 87, 340, 672, 694 |
| SinI | GGWCC | 2 cut(s) | 159, 710 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 221, 339 |
| Sse9I | AATT | 3 cut(s) | 400, 544, 724 |
| SsiI | CCGC | 9 cut(s) | 88, 91, 239, 267, 291, 564, 596, 736, 802 |
| SspMI | CTAG | 1 cut(s) | 294 |
| SstI | GAGCTC | 1 cut(s) | 464 |
| StyD4I | CCNGG | 2 cut(s) | 145, 312 |
| TaiI | ACGT | 1 cut(s) | 410 |
| TaqI | TCGA | 5 cut(s) | 27, 306, 404, 472, 834 |
| TasI | AATT | 3 cut(s) | 400, 544, 724 |
| TauI | GCSGC | 4 cut(s) | 93, 269, 599, 804 |
| TseFI | GTSAC | 1 cut(s) | 676 |
| TseI | GCWGC | 2 cut(s) | 56, 762 |
| Tsp45I | GTSAC | 1 cut(s) | 676 |
| TspDTI | ATGAA | 3 cut(s) | 395, 537, 879 |
| TspGWI | ACGGA | 2 cut(s) | 723, 840 |
| Tth111I | GACNNNGTC | 1 cut(s) | 409 |
| VpaK11BI | GGWCC | 2 cut(s) | 159, 710 |
| XapI | RAATTY | 1 cut(s) | 544 |
| XmnI | GAANNNNTTC | 1 cut(s) | 253 |
| XspI | CTAG | 1 cut(s) | 294 |
| ZraI | GACGTC | 1 cut(s) | 408 |
| Zsp2I | ATGCAT | 1 cut(s) | 687 |