Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 165 |
| Acc36I | ACCTGC | 1 cut(s) | 260 |
| AccBSI | CCGCTC | 1 cut(s) | 765 |
| AccII | CGCG | 5 cut(s) | 123, 209, 513, 591, 748 |
| AciI | CCGC | 9 cut(s) | 42, 121, 336, 360, 511, 513, 589, 698, 763 |
| AcoI | YGGCCR | 4 cut(s) | 333, 388, 463, 508 |
| AcsI | RAATTY | 1 cut(s) | 482 |
| AfaI | GTAC | 2 cut(s) | 602, 675 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 158, 186, 443 |
| AgsI | TTSAA | 1 cut(s) | 704 |
| AjnI | CCWGG | 2 cut(s) | 645, 718 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 173, 205, 356, 388 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 696, 728 |
| AluBI | AGCT | 2 cut(s) | 217, 568 |
| AluI | AGCT | 2 cut(s) | 217, 568 |
| Alw21I | GWGCWC | 3 cut(s) | 219, 244, 555 |
| Alw26I | GTCTC | 1 cut(s) | 63 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 532 |
| AoxI | GGCC | 7 cut(s) | 194, 333, 388, 463, 508, 534, 753 |
| ApeKI | GCWGC | 2 cut(s) | 10, 44 |
| ApoI | RAATTY | 1 cut(s) | 482 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 368, 400 |
| AspA2I | CCTAGG | 1 cut(s) | 20 |
| AspLEI | GCGC | 4 cut(s) | 166, 209, 748, 750 |
| AspS9I | GGNCC | 2 cut(s) | 112, 535 |
| AsuHPI | GGTGA | 4 cut(s) | 110, 141, 412, 752 |
| AvaII | GGWCC | 1 cut(s) | 112 |
| AvrII | CCTAGG | 1 cut(s) | 20 |
| BaeGI | GKGCMC | 1 cut(s) | 42 |
| BalI | TGGCCA | 2 cut(s) | 390, 465 |
| BanII | GRGCYC | 2 cut(s) | 219, 453 |
| BauI | CACGAG | 1 cut(s) | 243 |
| BbsI | GAAGAC | 1 cut(s) | 146 |
| Bbv12I | GWGCWC | 3 cut(s) | 219, 244, 555 |
| BbvI | GCAGC | 1 cut(s) | 31 |
| BccI | CCATC | 5 cut(s) | 209, 293, 431, 485, 490 |
| BceAI | ACGGC | 1 cut(s) | 460 |
| BciT130I | CCWGG | 2 cut(s) | 647, 720 |
| BclI | TGATCA | 1 cut(s) | 739 |
| BcoDI | GTCTC | 1 cut(s) | 63 |
| BfaI | CTAG | 2 cut(s) | 21, 410 |
| BfmI | CTRYAG | 1 cut(s) | 733 |
| BfuAI | ACCTGC | 1 cut(s) | 260 |
| BglII | AGATCT | 1 cut(s) | 247 |
| BisI | GCNGC | 6 cut(s) | 11, 45, 336, 511, 514, 589 |
| BlnI | CCTAGG | 1 cut(s) | 20 |
| BlsI | GCNGC | 6 cut(s) | 12, 46, 337, 512, 515, 590 |
| Bme1390I | CCNGG | 2 cut(s) | 647, 720 |
| Bme18I | GGWCC | 1 cut(s) | 112 |
| BmgT120I | GGNCC | 2 cut(s) | 112, 535 |
| BmiI | GGNNCC | 4 cut(s) | 27, 113, 517, 713 |
| BmrFI | CCNGG | 2 cut(s) | 647, 720 |
| BmrI | ACTGGG | 1 cut(s) | 118 |
| BmsI | GCATC | 4 cut(s) | 175, 408, 645, 733 |
| BmuI | ACTGGG | 1 cut(s) | 118 |
| BpiI | GAAGAC | 1 cut(s) | 146 |
| Bsa29I | ATCGAT | 1 cut(s) | 288 |
| BsaBI | GATNNNNATC | 1 cut(s) | 398 |
| BsaI | GGTCTC | 1 cut(s) | 63 |
| BsaJI | CCNNGG | 3 cut(s) | 20, 511, 719 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 71, 101 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 158, 186, 443 |
| Bse118I | RCCGGY | 1 cut(s) | 506 |
| Bse1I | ACTGG | 3 cut(s) | 113, 336, 433 |
| Bse8I | GATNNNNATC | 1 cut(s) | 398 |
| BseBI | CCWGG | 2 cut(s) | 647, 720 |
| BseCI | ATCGAT | 1 cut(s) | 288 |
| BseDI | CCNNGG | 3 cut(s) | 20, 511, 719 |
| BseGI | GGATG | 2 cut(s) | 605, 724 |
| BseJI | GATNNNNATC | 1 cut(s) | 398 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 158, 186, 443 |
| BseMII | CTCAG | 2 cut(s) | 48, 96 |
| BseNI | ACTGG | 3 cut(s) | 113, 336, 433 |
| BsePI | GCGCGC | 1 cut(s) | 746 |
| BseSI | GKGCMC | 1 cut(s) | 42 |
| BseX3I | CGGCCG | 1 cut(s) | 508 |
| BseXI | GCAGC | 1 cut(s) | 31 |
| BsgI | GTGCAG | 2 cut(s) | 155, 293 |
| Bsh1236I | CGCG | 5 cut(s) | 123, 209, 513, 591, 748 |
| Bsh1285I | CGRYCG | 1 cut(s) | 511 |
| BshFI | GGCC | 7 cut(s) | 196, 335, 390, 465, 510, 536, 755 |
| BshVI | ATCGAT | 1 cut(s) | 288 |
| BsiEI | CGRYCG | 1 cut(s) | 511 |
| BsiHKAI | GWGCWC | 3 cut(s) | 219, 244, 555 |
| BsiSI | CCGG | 2 cut(s) | 104, 507 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 158, 186, 443 |
| BsmAI | GTCTC | 1 cut(s) | 63 |
| BsnI | GGCC | 7 cut(s) | 196, 335, 390, 465, 510, 536, 755 |
| Bso31I | GGTCTC | 1 cut(s) | 63 |
| Bsp1286I | GDGCHC | 5 cut(s) | 42, 219, 244, 453, 555 |
| Bsp143I | GATC | 4 cut(s) | 247, 289, 739, 768 |
| BspACI | CCGC | 9 cut(s) | 42, 121, 336, 360, 511, 513, 589, 698, 763 |
| BspANI | GGCC | 7 cut(s) | 196, 335, 390, 465, 510, 536, 755 |
| BspCNI | CTCAG | 2 cut(s) | 47, 95 |
| BspDI | ATCGAT | 1 cut(s) | 288 |
| BspFNI | CGCG | 5 cut(s) | 123, 209, 513, 591, 748 |
| BspLI | GGNNCC | 4 cut(s) | 27, 113, 517, 713 |
| BspMI | ACCTGC | 1 cut(s) | 260 |
| BspQI | GCTCTTC | 1 cut(s) | 228 |
| BspTNI | GGTCTC | 1 cut(s) | 63 |
| BsrBI | CCGCTC | 1 cut(s) | 765 |
| BsrFI | RCCGGY | 1 cut(s) | 506 |
| BsrI | ACTGG | 3 cut(s) | 113, 336, 433 |
| BssAI | RCCGGY | 1 cut(s) | 506 |
| BssECI | CCNNGG | 3 cut(s) | 20, 511, 719 |
| BssHII | GCGCGC | 1 cut(s) | 746 |
| BssMI | GATC | 4 cut(s) | 247, 289, 739, 768 |
| BssSI | CACGAG | 1 cut(s) | 243 |
| BssT1I | CCWWGG | 1 cut(s) | 20 |
| Bst2BI | CACGAG | 1 cut(s) | 243 |
| Bst2UI | CCWGG | 2 cut(s) | 647, 720 |
| Bst4CI | ACNGT | 3 cut(s) | 63, 314, 528 |
| Bst6I | CTCTTC | 1 cut(s) | 228 |
| BstC8I | GCNNGC | 6 cut(s) | 42, 240, 256, 449, 534, 748 |
| BstDEI | CTNAG | 3 cut(s) | 34, 82, 677 |
| BstDSI | CCRYGG | 1 cut(s) | 511 |
| BstF5I | GGATG | 2 cut(s) | 605, 724 |
| BstFNI | CGCG | 5 cut(s) | 123, 209, 513, 591, 748 |
| BstHHI | GCGC | 4 cut(s) | 166, 209, 748, 750 |
| BstKTI | GATC | 4 cut(s) | 250, 292, 742, 771 |
| BstMAI | GTCTC | 1 cut(s) | 63 |
| BstMBI | GATC | 4 cut(s) | 247, 289, 739, 768 |
| BstMCI | CGRYCG | 1 cut(s) | 511 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 396, 457, 752 |
| BstNI | CCWGG | 2 cut(s) | 647, 720 |
| BstSCI | CCNGG | 2 cut(s) | 645, 718 |
| BstSFI | CTRYAG | 1 cut(s) | 733 |
| BstSLI | GKGCMC | 1 cut(s) | 42 |
| BstUI | CGCG | 5 cut(s) | 123, 209, 513, 591, 748 |
| BstV1I | GCAGC | 1 cut(s) | 31 |
| BstV2I | GAAGAC | 1 cut(s) | 146 |
| BstX2I | RGATCY | 1 cut(s) | 247 |
| BstYI | RGATCY | 1 cut(s) | 247 |
| BstZI | CGGCCG | 1 cut(s) | 508 |
| Bsu15I | ATCGAT | 1 cut(s) | 288 |
| BsuRI | GGCC | 7 cut(s) | 196, 335, 390, 465, 510, 536, 755 |
| BsuTUI | ATCGAT | 1 cut(s) | 288 |
| BtgI | CCRYGG | 1 cut(s) | 511 |
| BtsCI | GGATG | 2 cut(s) | 605, 724 |
| BtsIMutI | CAGTG | 5 cut(s) | 42, 59, 329, 426, 533 |
| BveI | ACCTGC | 1 cut(s) | 260 |
| Cac8I | GCNNGC | 6 cut(s) | 42, 240, 256, 449, 534, 748 |
| CaiI | CAGNNNCTG | 1 cut(s) | 532 |
| CfoI | GCGC | 4 cut(s) | 166, 209, 748, 750 |
| Cfr10I | RCCGGY | 1 cut(s) | 506 |
| Cfr13I | GGNCC | 2 cut(s) | 112, 535 |
| Cfr42I | CCGCGG | 1 cut(s) | 514 |
| ClaI | ATCGAT | 1 cut(s) | 288 |
| CseI | GACGC | 1 cut(s) | 151 |
| Csp6I | GTAC | 2 cut(s) | 601, 674 |
| CviAII | CATG | 5 cut(s) | 100, 222, 461, 664, 707 |
| CviQI | GTAC | 2 cut(s) | 601, 674 |
| DdeI | CTNAG | 3 cut(s) | 34, 82, 677 |
| DpnI | GATC | 4 cut(s) | 249, 291, 741, 770 |
| DpnII | GATC | 4 cut(s) | 247, 289, 739, 768 |
| EaeI | YGGCCR | 4 cut(s) | 333, 388, 463, 508 |
| EagI | CGGCCG | 1 cut(s) | 508 |
| Eam1104I | CTCTTC | 1 cut(s) | 228 |
| EarI | CTCTTC | 1 cut(s) | 228 |
| Ecl136II | GAGCTC | 1 cut(s) | 217 |
| EclXI | CGGCCG | 1 cut(s) | 508 |
| Eco130I | CCWWGG | 1 cut(s) | 20 |
| Eco24I | GRGCYC | 2 cut(s) | 219, 453 |
| Eco31I | GGTCTC | 1 cut(s) | 63 |
| Eco47I | GGWCC | 1 cut(s) | 112 |
| Eco52I | CGGCCG | 1 cut(s) | 508 |
| Eco53kI | GAGCTC | 1 cut(s) | 217 |
| EcoICRI | GAGCTC | 1 cut(s) | 217 |
| EcoO109I | RGGNCCY | 1 cut(s) | 112 |
| EcoRII | CCWGG | 2 cut(s) | 645, 718 |
| EcoT14I | CCWWGG | 1 cut(s) | 20 |
| EcoT38I | GRGCYC | 2 cut(s) | 219, 453 |
| ErhI | CCWWGG | 1 cut(s) | 20 |
| FaeI | CATG | 5 cut(s) | 103, 225, 464, 667, 710 |
| FatI | CATG | 5 cut(s) | 99, 221, 460, 663, 706 |
| FauI | CCCGC | 2 cut(s) | 49, 705 |
| FbaI | TGATCA | 1 cut(s) | 739 |
| Fnu4HI | GCNGC | 6 cut(s) | 11, 45, 336, 511, 514, 589 |
| FokI | GGATG | 2 cut(s) | 592, 711 |
| FriOI | GRGCYC | 2 cut(s) | 219, 453 |
| Fsp4HI | GCNGC | 6 cut(s) | 11, 45, 336, 511, 514, 589 |
| FspAI | RTGCGCAY | 1 cut(s) | 165 |
| FspBI | CTAG | 2 cut(s) | 21, 410 |
| FspI | TGCGCA | 1 cut(s) | 165 |
| GlaI | GCGC | 4 cut(s) | 165, 208, 747, 749 |
| GluI | GCNGC | 6 cut(s) | 11, 45, 336, 511, 514, 589 |
| HaeIII | GGCC | 7 cut(s) | 196, 335, 390, 465, 510, 536, 755 |
| HapII | CCGG | 2 cut(s) | 104, 507 |
| HgaI | GACGC | 1 cut(s) | 151 |
| HhaI | GCGC | 4 cut(s) | 166, 209, 748, 750 |
| Hin1II | CATG | 5 cut(s) | 103, 225, 464, 667, 710 |
| Hin6I | GCGC | 4 cut(s) | 164, 207, 746, 748 |
| HinP1I | GCGC | 4 cut(s) | 164, 207, 746, 748 |
| HindIII | AAGCTT | 1 cut(s) | 566 |
| HinfI | GANTC | 5 cut(s) | 86, 127, 473, 668, 687 |
| HpaII | CCGG | 2 cut(s) | 104, 507 |
| HphI | GGTGA | 4 cut(s) | 110, 141, 412, 752 |
| Hpy166II | GTNNAC | 2 cut(s) | 434, 603 |
| Hpy188I | TCNGA | 2 cut(s) | 85, 622 |
| Hpy188III | TCNNGA | 4 cut(s) | 66, 136, 230, 352 |
| Hpy8I | GTNNAC | 2 cut(s) | 434, 603 |
| Hpy99I | CGWCG | 2 cut(s) | 214, 496 |
| HpyAV | CCTTC | 3 cut(s) | 125, 498, 725 |
| HpyCH4III | ACNGT | 3 cut(s) | 63, 314, 528 |
| HpyCH4IV | ACGT | 2 cut(s) | 264, 404 |
| HpyCH4V | TGCA | 3 cut(s) | 172, 310, 460 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 396, 457, 752 |
| HpyF3I | CTNAG | 3 cut(s) | 34, 82, 677 |
| HpySE526I | ACGT | 2 cut(s) | 264, 404 |
| Hsp92II | CATG | 5 cut(s) | 103, 225, 464, 667, 710 |
| HspAI | GCGC | 4 cut(s) | 164, 207, 746, 748 |
| Ksp22I | TGATCA | 1 cut(s) | 739 |
| KspI | CCGCGG | 1 cut(s) | 514 |
| Kzo9I | GATC | 4 cut(s) | 247, 289, 739, 768 |
| LguI | GCTCTTC | 1 cut(s) | 228 |
| LmnI | GCTCC | 3 cut(s) | 214, 521, 550 |
| Lsp1109I | GCAGC | 1 cut(s) | 31 |
| LweI | GCATC | 4 cut(s) | 175, 408, 645, 733 |
| MaeI | CTAG | 2 cut(s) | 21, 410 |
| MaeII | ACGT | 2 cut(s) | 264, 404 |
| MaeIII | GTNAC | 1 cut(s) | 77 |
| MalI | GATC | 4 cut(s) | 249, 291, 741, 770 |
| MbiI | CCGCTC | 1 cut(s) | 765 |
| MboI | GATC | 4 cut(s) | 247, 289, 739, 768 |
| MboII | GAAGA | 3 cut(s) | 151, 245, 696 |
| MflI | RGATCY | 1 cut(s) | 247 |
| MhlI | GDGCHC | 5 cut(s) | 42, 219, 244, 453, 555 |
| MlsI | TGGCCA | 2 cut(s) | 390, 465 |
| MluCI | AATT | 4 cut(s) | 93, 383, 467, 482 |
| MluNI | TGGCCA | 2 cut(s) | 390, 465 |
| MlyI | GAGTC | 3 cut(s) | 80, 467, 662 |
| MmeI | TCCRAC | 1 cut(s) | 325 |
| MnlI | CCTC | 5 cut(s) | 43, 83, 163, 586, 653 |
| Mox20I | TGGCCA | 2 cut(s) | 390, 465 |
| MscI | TGGCCA | 2 cut(s) | 390, 465 |
| Msp20I | TGGCCA | 2 cut(s) | 390, 465 |
| MspA1I | CMGCKG | 2 cut(s) | 44, 513 |
| MspI | CCGG | 2 cut(s) | 104, 507 |
| MspR9I | CCNGG | 2 cut(s) | 647, 720 |
| MvaI | CCWGG | 2 cut(s) | 647, 720 |
| MvnI | CGCG | 5 cut(s) | 123, 209, 513, 591, 748 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 396, 457, 752 |
| NdeII | GATC | 4 cut(s) | 247, 289, 739, 768 |
| NlaIII | CATG | 5 cut(s) | 103, 225, 464, 667, 710 |
| NlaIV | GGNNCC | 4 cut(s) | 27, 113, 517, 713 |
| NsbI | TGCGCA | 1 cut(s) | 165 |
| PauI | GCGCGC | 1 cut(s) | 746 |
| PciSI | GCTCTTC | 1 cut(s) | 228 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 235 |
| PfeI | GAWTC | 2 cut(s) | 127, 687 |
| PflFI | GACNNNGTC | 1 cut(s) | 110 |
| PfoI | TCCNGGA | 1 cut(s) | 645 |
| PkrI | GCNGC | 6 cut(s) | 12, 46, 337, 512, 515, 590 |
| PleI | GAGTC | 3 cut(s) | 80, 467, 662 |
| PpsI | GAGTC | 3 cut(s) | 80, 467, 662 |
| PpuMI | RGGWCCY | 1 cut(s) | 112 |
| Psp124BI | GAGCTC | 1 cut(s) | 219 |
| Psp5II | RGGWCCY | 1 cut(s) | 112 |
| Psp6I | CCWGG | 2 cut(s) | 645, 718 |
| PspGI | CCWGG | 2 cut(s) | 645, 718 |
| PspN4I | GGNNCC | 4 cut(s) | 27, 113, 517, 713 |
| PspPI | GGNCC | 2 cut(s) | 112, 535 |
| PspPPI | RGGWCCY | 1 cut(s) | 112 |
| PstNI | CAGNNNCTG | 1 cut(s) | 532 |
| PsuI | RGATCY | 1 cut(s) | 247 |
| PsyI | GACNNNGTC | 1 cut(s) | 110 |
| PteI | GCGCGC | 1 cut(s) | 746 |
| RsaI | GTAC | 2 cut(s) | 602, 675 |
| RsaNI | GTAC | 2 cut(s) | 601, 674 |
| SacI | GAGCTC | 1 cut(s) | 219 |
| SacII | CCGCGG | 1 cut(s) | 514 |
| SapI | GCTCTTC | 1 cut(s) | 228 |
| SatI | GCNGC | 6 cut(s) | 11, 45, 336, 511, 514, 589 |
| Sau3AI | GATC | 4 cut(s) | 247, 289, 739, 768 |
| Sau96I | GGNCC | 2 cut(s) | 112, 535 |
| SchI | GAGTC | 3 cut(s) | 80, 467, 662 |
| ScrFI | CCNGG | 2 cut(s) | 647, 720 |
| SduI | GDGCHC | 5 cut(s) | 42, 219, 244, 453, 555 |
| SfaNI | GCATC | 4 cut(s) | 175, 408, 645, 733 |
| SfcI | CTRYAG | 1 cut(s) | 733 |
| Sfr303I | CCGCGG | 1 cut(s) | 514 |
| SgrBI | CCGCGG | 1 cut(s) | 514 |
| SinI | GGWCC | 1 cut(s) | 112 |
| Sse9I | AATT | 4 cut(s) | 93, 383, 467, 482 |
| SsiI | CCGC | 9 cut(s) | 42, 121, 336, 360, 511, 513, 589, 698, 763 |
| SspMI | CTAG | 2 cut(s) | 21, 410 |
| SstI | GAGCTC | 1 cut(s) | 219 |
| StyD4I | CCNGG | 2 cut(s) | 645, 718 |
| StyI | CCWWGG | 1 cut(s) | 20 |
| TaaI | ACNGT | 3 cut(s) | 63, 314, 528 |
| TaiI | ACGT | 2 cut(s) | 267, 407 |
| TaqI | TCGA | 5 cut(s) | 229, 288, 375, 491, 767 |
| TasI | AATT | 4 cut(s) | 93, 383, 467, 482 |
| TauI | GCSGC | 4 cut(s) | 338, 513, 516, 591 |
| TfiI | GAWTC | 2 cut(s) | 127, 687 |
| TscAI | CASTG | 5 cut(s) | 42, 66, 336, 433, 533 |
| TseI | GCWGC | 2 cut(s) | 10, 44 |
| TspDTI | ATGAA | 2 cut(s) | 39, 88 |
| TspGWI | ACGGA | 1 cut(s) | 227 |
| TspRI | CASTG | 5 cut(s) | 42, 66, 336, 433, 533 |
| Tth111I | GACNNNGTC | 1 cut(s) | 110 |
| VpaK11BI | GGWCC | 1 cut(s) | 112 |
| XapI | RAATTY | 1 cut(s) | 482 |
| XmaJI | CCTAGG | 1 cut(s) | 20 |
| XspI | CTAG | 2 cut(s) | 21, 410 |