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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 114 |
| Acc36I | ACCTGC | 1 cut(s) | 489 |
| AccB1I | GGYRCC | 1 cut(s) | 219 |
| AccII | CGCG | 2 cut(s) | 371, 486 |
| AciI | CCGC | 5 cut(s) | 61, 84, 189, 444, 475 |
| AcoI | YGGCCR | 1 cut(s) | 186 |
| AcyI | GRCGYC | 2 cut(s) | 220, 441 |
| AfaI | GTAC | 2 cut(s) | 130, 239 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 42, 156, 216, 291 |
| AgeI | ACCGGT | 1 cut(s) | 149 |
| AluBI | AGCT | 2 cut(s) | 418, 472 |
| AluI | AGCT | 2 cut(s) | 418, 472 |
| Alw21I | GWGCWC | 1 cut(s) | 72 |
| Alw26I | GTCTC | 3 cut(s) | 257, 340, 462 |
| Ama87I | CYCGRG | 1 cut(s) | 464 |
| AoxI | GGCC | 3 cut(s) | 3, 173, 186 |
| ApeKI | GCWGC | 1 cut(s) | 469 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 350, 382 |
| AsiGI | ACCGGT | 1 cut(s) | 149 |
| AspLEI | GCGC | 2 cut(s) | 222, 486 |
| AspS9I | GGNCC | 3 cut(s) | 4, 174, 294 |
| AsuC2I | CCSGG | 2 cut(s) | 65, 504 |
| AvaI | CYCGRG | 1 cut(s) | 464 |
| AvaII | GGWCC | 1 cut(s) | 294 |
| BanI | GGYRCC | 1 cut(s) | 219 |
| BanII | GRGCYC | 2 cut(s) | 203, 492 |
| BbsI | GAAGAC | 1 cut(s) | 444 |
| Bbv12I | GWGCWC | 1 cut(s) | 72 |
| BbvI | GCAGC | 1 cut(s) | 481 |
| BccI | CCATC | 1 cut(s) | 284 |
| BceAI | ACGGC | 3 cut(s) | 176, 201, 269 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 476, 510 |
| BcnI | CCSGG | 2 cut(s) | 65, 504 |
| BcoDI | GTCTC | 3 cut(s) | 257, 340, 462 |
| BfaI | CTAG | 1 cut(s) | 508 |
| BfoI | RGCGCY | 1 cut(s) | 223 |
| BfuAI | ACCTGC | 1 cut(s) | 489 |
| BisI | GCNGC | 3 cut(s) | 189, 444, 470 |
| BlsI | GCNGC | 3 cut(s) | 190, 445, 471 |
| Bme1390I | CCNGG | 2 cut(s) | 65, 504 |
| Bme18I | GGWCC | 1 cut(s) | 294 |
| BmeT110I | CYCGRG | 1 cut(s) | 464 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 174, 294 |
| BmiI | GGNNCC | 3 cut(s) | 221, 295, 387 |
| BmrFI | CCNGG | 2 cut(s) | 65, 504 |
| BmsI | GCATC | 3 cut(s) | 262, 271, 384 |
| BpiI | GAAGAC | 1 cut(s) | 444 |
| BpuMI | CCSGG | 2 cut(s) | 65, 504 |
| Bsa29I | ATCGAT | 1 cut(s) | 279 |
| BsaHI | GRCGYC | 2 cut(s) | 220, 441 |
| BsaI | GGTCTC | 1 cut(s) | 462 |
| BsaJI | CCNNGG | 2 cut(s) | 41, 285 |
| BsaWI | WCCGGW | 1 cut(s) | 149 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 17, 47 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 42, 156, 216, 291 |
| Bse118I | RCCGGY | 2 cut(s) | 80, 149 |
| Bse3DI | GCAATG | 2 cut(s) | 25, 176 |
| BseCI | ATCGAT | 1 cut(s) | 279 |
| BseDI | CCNNGG | 2 cut(s) | 41, 285 |
| BseGI | GGATG | 2 cut(s) | 253, 295 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 42, 156, 216, 291 |
| BseMI | GCAATG | 2 cut(s) | 25, 176 |
| BseRI | GAGGAG | 1 cut(s) | 450 |
| BseX3I | CGGCCG | 1 cut(s) | 186 |
| BseXI | GCAGC | 1 cut(s) | 481 |
| Bsh1236I | CGCG | 2 cut(s) | 371, 486 |
| Bsh1285I | CGRYCG | 1 cut(s) | 189 |
| BshFI | GGCC | 3 cut(s) | 5, 175, 188 |
| BshNI | GGYRCC | 1 cut(s) | 219 |
| BshTI | ACCGGT | 1 cut(s) | 149 |
| BshVI | ATCGAT | 1 cut(s) | 279 |
| BsiEI | CGRYCG | 1 cut(s) | 189 |
| BsiHKAI | GWGCWC | 1 cut(s) | 72 |
| BsiHKCI | CYCGRG | 1 cut(s) | 464 |
| BsiSI | CCGG | 4 cut(s) | 64, 81, 150, 504 |
| BslFI | GGGAC | 1 cut(s) | 307 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 42, 156, 216, 291 |
| BsmAI | GTCTC | 3 cut(s) | 257, 340, 462 |
| BsmFI | GGGAC | 1 cut(s) | 307 |
| BsnI | GGCC | 3 cut(s) | 5, 175, 188 |
| Bso31I | GGTCTC | 1 cut(s) | 462 |
| BsoBI | CYCGRG | 1 cut(s) | 464 |
| Bsp1286I | GDGCHC | 3 cut(s) | 72, 203, 492 |
| Bsp68I | TCGCGA | 1 cut(s) | 371 |
| BspACI | CCGC | 5 cut(s) | 61, 84, 189, 444, 475 |
| BspANI | GGCC | 3 cut(s) | 5, 175, 188 |
| BspDI | ATCGAT | 1 cut(s) | 279 |
| BspFNI | CGCG | 2 cut(s) | 371, 486 |
| BspLI | GGNNCC | 3 cut(s) | 221, 295, 387 |
| BspMI | ACCTGC | 1 cut(s) | 489 |
| BspT107I | GGYRCC | 1 cut(s) | 219 |
| BspTNI | GGTCTC | 1 cut(s) | 462 |
| BsrDI | GCAATG | 2 cut(s) | 25, 176 |
| BsrFI | RCCGGY | 2 cut(s) | 80, 149 |
| BssAI | RCCGGY | 2 cut(s) | 80, 149 |
| BssECI | CCNNGG | 2 cut(s) | 41, 285 |
| BssNI | GRCGYC | 2 cut(s) | 220, 441 |
| Bst4CI | ACNGT | 2 cut(s) | 45, 242 |
| Bst6I | CTCTTC | 2 cut(s) | 168, 371 |
| BstACI | GRCGYC | 2 cut(s) | 220, 441 |
| BstC8I | GCNNGC | 3 cut(s) | 373, 427, 488 |
| BstDEI | CTNAG | 2 cut(s) | 97, 270 |
| BstDSI | CCRYGG | 2 cut(s) | 41, 285 |
| BstF5I | GGATG | 2 cut(s) | 253, 295 |
| BstFNI | CGCG | 2 cut(s) | 371, 486 |
| BstH2I | RGCGCY | 1 cut(s) | 223 |
| BstHHI | GCGC | 2 cut(s) | 222, 486 |
| BstMAI | GTCTC | 3 cut(s) | 257, 340, 462 |
| BstMCI | CGRYCG | 1 cut(s) | 189 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 483 |
| BstSCI | CCNGG | 2 cut(s) | 63, 502 |
| BstUI | CGCG | 2 cut(s) | 371, 486 |
| BstV1I | GCAGC | 1 cut(s) | 481 |
| BstV2I | GAAGAC | 1 cut(s) | 444 |
| BstZI | CGGCCG | 1 cut(s) | 186 |
| Bsu15I | ATCGAT | 1 cut(s) | 279 |
| BsuRI | GGCC | 3 cut(s) | 5, 175, 188 |
| BsuTUI | ATCGAT | 1 cut(s) | 279 |
| BtgI | CCRYGG | 2 cut(s) | 41, 285 |
| BtsCI | GGATG | 2 cut(s) | 253, 295 |
| BtuMI | TCGCGA | 1 cut(s) | 371 |
| BveI | ACCTGC | 1 cut(s) | 489 |
| Cac8I | GCNNGC | 3 cut(s) | 373, 427, 488 |
| CfoI | GCGC | 2 cut(s) | 222, 486 |
| Cfr10I | RCCGGY | 2 cut(s) | 80, 149 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 174, 294 |
| ClaI | ATCGAT | 1 cut(s) | 279 |
| CseI | GACGC | 1 cut(s) | 449 |
| Csp6I | GTAC | 2 cut(s) | 129, 238 |
| CspAI | ACCGGT | 1 cut(s) | 149 |
| CviQI | GTAC | 2 cut(s) | 129, 238 |
| DdeI | CTNAG | 2 cut(s) | 97, 270 |
| DinI | GGCGCC | 1 cut(s) | 221 |
| EaeI | YGGCCR | 1 cut(s) | 186 |
| EagI | CGGCCG | 1 cut(s) | 186 |
| Eam1104I | CTCTTC | 2 cut(s) | 168, 371 |
| EarI | CTCTTC | 2 cut(s) | 168, 371 |
| EciI | GGCGGA | 1 cut(s) | 99 |
| EclXI | CGGCCG | 1 cut(s) | 186 |
| Eco24I | GRGCYC | 2 cut(s) | 203, 492 |
| Eco31I | GGTCTC | 1 cut(s) | 462 |
| Eco32I | GATATC | 1 cut(s) | 395 |
| Eco47I | GGWCC | 1 cut(s) | 294 |
| Eco52I | CGGCCG | 1 cut(s) | 186 |
| Eco88I | CYCGRG | 1 cut(s) | 464 |
| EcoRV | GATATC | 1 cut(s) | 395 |
| EcoT22I | ATGCAT | 1 cut(s) | 255 |
| EcoT38I | GRGCYC | 2 cut(s) | 203, 492 |
| EgeI | GGCGCC | 1 cut(s) | 221 |
| EheI | GGCGCC | 1 cut(s) | 221 |
| FaiI | YATR | 5 cut(s) | 114, 141, 251, 309, 357 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 107, 139 |
| FaqI | GGGAC | 1 cut(s) | 307 |
| Fnu4HI | GCNGC | 3 cut(s) | 189, 444, 470 |
| FokI | GGATG | 2 cut(s) | 240, 302 |
| FriOI | GRGCYC | 2 cut(s) | 203, 492 |
| Fsp4HI | GCNGC | 3 cut(s) | 189, 444, 470 |
| FspBI | CTAG | 1 cut(s) | 508 |
| GlaI | GCGC | 2 cut(s) | 221, 485 |
| GluI | GCNGC | 3 cut(s) | 189, 444, 470 |
| HaeII | RGCGCY | 1 cut(s) | 223 |
| HaeIII | GGCC | 3 cut(s) | 5, 175, 188 |
| HapII | CCGG | 4 cut(s) | 64, 81, 150, 504 |
| HgaI | GACGC | 1 cut(s) | 449 |
| HhaI | GCGC | 2 cut(s) | 222, 486 |
| Hin1I | GRCGYC | 2 cut(s) | 220, 441 |
| Hin6I | GCGC | 2 cut(s) | 220, 484 |
| HinP1I | GCGC | 2 cut(s) | 220, 484 |
| HinfI | GANTC | 1 cut(s) | 160 |
| HpaII | CCGG | 4 cut(s) | 64, 81, 150, 504 |
| Hpy188I | TCNGA | 1 cut(s) | 345 |
| Hpy188III | TCNNGA | 4 cut(s) | 262, 370, 434, 464 |
| HpyAV | CCTTC | 2 cut(s) | 103, 296 |
| HpyCH4III | ACNGT | 2 cut(s) | 45, 242 |
| HpyCH4V | TGCA | 2 cut(s) | 77, 253 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 483 |
| HpyF3I | CTNAG | 2 cut(s) | 97, 270 |
| Hsp92I | GRCGYC | 2 cut(s) | 220, 441 |
| HspAI | GCGC | 2 cut(s) | 220, 484 |
| KasI | GGCGCC | 1 cut(s) | 219 |
| LmnI | GCTCC | 2 cut(s) | 67, 477 |
| LpnPI | CCDG | 4 cut(s) | 77, 94, 163, 494 |
| Lsp1109I | GCAGC | 1 cut(s) | 481 |
| LweI | GCATC | 3 cut(s) | 262, 271, 384 |
| MaeI | CTAG | 1 cut(s) | 508 |
| MboII | GAAGA | 4 cut(s) | 155, 311, 358, 449 |
| MfeI | CAATTG | 1 cut(s) | 337 |
| MhlI | GDGCHC | 3 cut(s) | 72, 203, 492 |
| MluCI | AATT | 2 cut(s) | 87, 337 |
| Mly113I | GGCGCC | 1 cut(s) | 220 |
| MlyI | GAGTC | 1 cut(s) | 154 |
| MmeI | TCCRAC | 1 cut(s) | 323 |
| MnlI | CCTC | 5 cut(s) | 145, 187, 234, 304, 471 |
| Mph1103I | ATGCAT | 1 cut(s) | 255 |
| MspI | CCGG | 4 cut(s) | 64, 81, 150, 504 |
| MspR9I | CCNGG | 2 cut(s) | 65, 504 |
| MunI | CAATTG | 1 cut(s) | 337 |
| MvnI | CGCG | 2 cut(s) | 371, 486 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 483 |
| NarI | GGCGCC | 1 cut(s) | 220 |
| NciI | CCSGG | 2 cut(s) | 65, 504 |
| NlaIV | GGNNCC | 3 cut(s) | 221, 295, 387 |
| NmeAIII | GCCGAG | 1 cut(s) | 182 |
| NruI | TCGCGA | 1 cut(s) | 371 |
| NsiI | ATGCAT | 1 cut(s) | 255 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 349 |
| PinAI | ACCGGT | 1 cut(s) | 149 |
| PkrI | GCNGC | 3 cut(s) | 190, 445, 471 |
| PleI | GAGTC | 1 cut(s) | 154 |
| PluTI | GGCGCC | 1 cut(s) | 223 |
| PpsI | GAGTC | 1 cut(s) | 154 |
| PsiI | TTATAA | 1 cut(s) | 114 |
| PspN4I | GGNNCC | 3 cut(s) | 221, 295, 387 |
| PspPI | GGNCC | 3 cut(s) | 4, 174, 294 |
| RruI | TCGCGA | 1 cut(s) | 371 |
| RsaI | GTAC | 2 cut(s) | 130, 239 |
| RsaNI | GTAC | 2 cut(s) | 129, 238 |
| SatI | GCNGC | 3 cut(s) | 189, 444, 470 |
| Sau96I | GGNCC | 3 cut(s) | 4, 174, 294 |
| SchI | GAGTC | 1 cut(s) | 154 |
| ScrFI | CCNGG | 2 cut(s) | 65, 504 |
| SduI | GDGCHC | 3 cut(s) | 72, 203, 492 |
| SetI | ASST | 4 cut(s) | 16, 420, 474, 483 |
| SfaNI | GCATC | 3 cut(s) | 262, 271, 384 |
| SfoI | GGCGCC | 1 cut(s) | 221 |
| SgrAI | CRCCGGYG | 1 cut(s) | 149 |
| SinI | GGWCC | 1 cut(s) | 294 |
| Sse9I | AATT | 2 cut(s) | 87, 337 |
| SsiI | CCGC | 5 cut(s) | 61, 84, 189, 444, 475 |
| SspDI | GGCGCC | 1 cut(s) | 219 |
| SspMI | CTAG | 1 cut(s) | 508 |
| StyD4I | CCNGG | 2 cut(s) | 63, 502 |
| TaaI | ACNGT | 2 cut(s) | 45, 242 |
| TaqI | TCGA | 3 cut(s) | 179, 261, 279 |
| TaqII | GACCGA | 2 cut(s) | 311, 444 |
| TasI | AATT | 2 cut(s) | 87, 337 |
| TatI | WGTACW | 1 cut(s) | 128 |
| TauI | GCSGC | 2 cut(s) | 191, 446 |
| TseI | GCWGC | 1 cut(s) | 469 |
| TspDTI | ATGAA | 1 cut(s) | 109 |
| VpaK11BI | GGWCC | 1 cut(s) | 294 |
| XspI | CTAG | 1 cut(s) | 508 |
| Zsp2I | ATGCAT | 1 cut(s) | 255 |