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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 153 |
| AccII | CGCG | 6 cut(s) | 152, 291, 480, 482, 504, 530 |
| AccIII | TCCGGA | 1 cut(s) | 243 |
| AclWI | GGATC | 2 cut(s) | 241, 254 |
| AcoI | YGGCCR | 2 cut(s) | 144, 201 |
| AcsI | RAATTY | 1 cut(s) | 267 |
| AdeI | CACNNNGTG | 1 cut(s) | 153 |
| AfaI | GTAC | 3 cut(s) | 198, 359, 398 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 113, 153, 175, 457 |
| AgeI | ACCGGT | 1 cut(s) | 168 |
| AgsI | TTSAA | 2 cut(s) | 266, 440 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 432, 464 |
| AluBI | AGCT | 1 cut(s) | 523 |
| AluI | AGCT | 1 cut(s) | 523 |
| AlwI | GGATC | 2 cut(s) | 241, 254 |
| Ama87I | CYCGRG | 4 cut(s) | 124, 232, 455, 554 |
| Aor13HI | TCCGGA | 1 cut(s) | 243 |
| AoxI | GGCC | 3 cut(s) | 144, 201, 235 |
| ApaI | GGGCCC | 1 cut(s) | 239 |
| ApoI | RAATTY | 1 cut(s) | 267 |
| AsiGI | ACCGGT | 1 cut(s) | 168 |
| AspLEI | GCGC | 3 cut(s) | 482, 484, 532 |
| AspS9I | GGNCC | 3 cut(s) | 109, 235, 236 |
| AsuC2I | CCSGG | 4 cut(s) | 54, 456, 457, 595 |
| AsuII | TTCGAA | 1 cut(s) | 219 |
| AvaI | CYCGRG | 4 cut(s) | 124, 232, 455, 554 |
| AvaII | GGWCC | 1 cut(s) | 109 |
| BaeGI | GKGCMC | 1 cut(s) | 239 |
| BamHI | GGATCC | 1 cut(s) | 246 |
| BanII | GRGCYC | 3 cut(s) | 161, 181, 239 |
| BccI | CCATC | 1 cut(s) | 330 |
| BceAI | ACGGC | 1 cut(s) | 159 |
| BclI | TGATCA | 1 cut(s) | 411 |
| BcnI | CCSGG | 4 cut(s) | 54, 456, 457, 595 |
| BfaI | CTAG | 1 cut(s) | 613 |
| BisI | GCNGC | 3 cut(s) | 289, 305, 502 |
| BlsI | GCNGC | 3 cut(s) | 290, 306, 503 |
| Bme1390I | CCNGG | 4 cut(s) | 54, 456, 457, 595 |
| Bme18I | GGWCC | 1 cut(s) | 109 |
| BmeT110I | CYCGRG | 4 cut(s) | 124, 232, 455, 554 |
| BmgT120I | GGNCC | 3 cut(s) | 109, 235, 236 |
| BmiI | GGNNCC | 5 cut(s) | 180, 237, 238, 248, 449 |
| BmrFI | CCNGG | 4 cut(s) | 54, 456, 457, 595 |
| BmsI | GCATC | 2 cut(s) | 220, 580 |
| Bpu14I | TTCGAA | 1 cut(s) | 219 |
| BpuMI | CCSGG | 4 cut(s) | 54, 456, 457, 595 |
| BsaJI | CCNNGG | 3 cut(s) | 112, 455, 456 |
| BsaWI | WCCGGW | 3 cut(s) | 106, 168, 243 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 593 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 113, 153, 175, 457 |
| Bse118I | RCCGGY | 2 cut(s) | 168, 199 |
| BseAI | TCCGGA | 1 cut(s) | 243 |
| BseDI | CCNNGG | 3 cut(s) | 112, 455, 456 |
| BseGI | GGATG | 3 cut(s) | 211, 362, 466 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 113, 153, 175, 457 |
| BsePI | GCGCGC | 1 cut(s) | 480 |
| BseSI | GKGCMC | 1 cut(s) | 239 |
| Bsh1236I | CGCG | 6 cut(s) | 152, 291, 480, 482, 504, 530 |
| BshFI | GGCC | 3 cut(s) | 146, 203, 237 |
| BshTI | ACCGGT | 1 cut(s) | 168 |
| BsiHKCI | CYCGRG | 4 cut(s) | 124, 232, 455, 554 |
| BsiSI | CCGG | 8 cut(s) | 54, 107, 169, 200, 244, 456, 487, 595 |
| BslFI | GGGAC | 1 cut(s) | 141 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 113, 153, 175, 457 |
| BsmFI | GGGAC | 1 cut(s) | 141 |
| BsnI | GGCC | 3 cut(s) | 146, 203, 237 |
| BsoBI | CYCGRG | 4 cut(s) | 124, 232, 455, 554 |
| Bsp119I | TTCGAA | 1 cut(s) | 219 |
| Bsp120I | GGGCCC | 1 cut(s) | 235 |
| Bsp1286I | GDGCHC | 3 cut(s) | 161, 181, 239 |
| Bsp13I | TCCGGA | 1 cut(s) | 243 |
| Bsp143I | GATC | 3 cut(s) | 246, 411, 475 |
| BspANI | GGCC | 3 cut(s) | 146, 203, 237 |
| BspEI | TCCGGA | 1 cut(s) | 243 |
| BspFNI | CGCG | 6 cut(s) | 152, 291, 480, 482, 504, 530 |
| BspLI | GGNNCC | 5 cut(s) | 180, 237, 238, 248, 449 |
| BspPI | GGATC | 2 cut(s) | 241, 254 |
| BspT104I | TTCGAA | 1 cut(s) | 219 |
| BsrFI | RCCGGY | 2 cut(s) | 168, 199 |
| BssAI | RCCGGY | 2 cut(s) | 168, 199 |
| BssECI | CCNNGG | 3 cut(s) | 112, 455, 456 |
| BssHII | GCGCGC | 1 cut(s) | 480 |
| BssMI | GATC | 3 cut(s) | 246, 411, 475 |
| BssT1I | CCWWGG | 1 cut(s) | 112 |
| Bst6I | CTCTTC | 1 cut(s) | 330 |
| BstBI | TTCGAA | 1 cut(s) | 219 |
| BstC8I | GCNNGC | 3 cut(s) | 482, 499, 547 |
| BstDEI | CTNAG | 1 cut(s) | 406 |
| BstF5I | GGATG | 3 cut(s) | 211, 362, 466 |
| BstFNI | CGCG | 6 cut(s) | 152, 291, 480, 482, 504, 530 |
| BstHHI | GCGC | 3 cut(s) | 482, 484, 532 |
| BstKTI | GATC | 3 cut(s) | 249, 414, 478 |
| BstMBI | GATC | 3 cut(s) | 246, 411, 475 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 529 |
| BstSCI | CCNGG | 4 cut(s) | 52, 454, 455, 593 |
| BstSLI | GKGCMC | 1 cut(s) | 239 |
| BstUI | CGCG | 6 cut(s) | 152, 291, 480, 482, 504, 530 |
| BstX2I | RGATCY | 1 cut(s) | 246 |
| BstYI | RGATCY | 1 cut(s) | 246 |
| BsuRI | GGCC | 3 cut(s) | 146, 203, 237 |
| BtsCI | GGATG | 3 cut(s) | 211, 362, 466 |
| Cac8I | GCNNGC | 3 cut(s) | 482, 499, 547 |
| CfoI | GCGC | 3 cut(s) | 482, 484, 532 |
| Cfr10I | RCCGGY | 2 cut(s) | 168, 199 |
| Cfr13I | GGNCC | 3 cut(s) | 109, 235, 236 |
| Cfr9I | CCCGGG | 1 cut(s) | 455 |
| Csp6I | GTAC | 3 cut(s) | 197, 358, 397 |
| CspAI | ACCGGT | 1 cut(s) | 168 |
| CviAII | CATG | 1 cut(s) | 443 |
| CviQI | GTAC | 3 cut(s) | 197, 358, 397 |
| DdeI | CTNAG | 1 cut(s) | 406 |
| DpnI | GATC | 3 cut(s) | 248, 413, 477 |
| DpnII | GATC | 3 cut(s) | 246, 411, 475 |
| DraIII | CACNNNGTG | 1 cut(s) | 153 |
| EaeI | YGGCCR | 2 cut(s) | 144, 201 |
| Eam1104I | CTCTTC | 1 cut(s) | 330 |
| EarI | CTCTTC | 1 cut(s) | 330 |
| EciI | GGCGGA | 2 cut(s) | 275, 291 |
| Eco130I | CCWWGG | 1 cut(s) | 112 |
| Eco24I | GRGCYC | 3 cut(s) | 161, 181, 239 |
| Eco47I | GGWCC | 1 cut(s) | 109 |
| Eco88I | CYCGRG | 4 cut(s) | 124, 232, 455, 554 |
| EcoO109I | RGGNCCY | 1 cut(s) | 236 |
| EcoT14I | CCWWGG | 1 cut(s) | 112 |
| EcoT22I | ATGCAT | 1 cut(s) | 213 |
| EcoT38I | GRGCYC | 3 cut(s) | 161, 181, 239 |
| ErhI | CCWWGG | 1 cut(s) | 112 |
| FaeI | CATG | 1 cut(s) | 446 |
| FaiI | YATR | 5 cut(s) | 209, 391, 444, 471, 519 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 63, 95 |
| FaqI | GGGAC | 1 cut(s) | 141 |
| FatI | CATG | 1 cut(s) | 442 |
| FauI | CCCGC | 2 cut(s) | 375, 435 |
| FbaI | TGATCA | 1 cut(s) | 411 |
| Fnu4HI | GCNGC | 3 cut(s) | 289, 305, 502 |
| FokI | GGATG | 3 cut(s) | 198, 349, 473 |
| FriOI | GRGCYC | 3 cut(s) | 161, 181, 239 |
| Fsp4HI | GCNGC | 3 cut(s) | 289, 305, 502 |
| FspBI | CTAG | 1 cut(s) | 613 |
| GlaI | GCGC | 3 cut(s) | 481, 483, 531 |
| GluI | GCNGC | 3 cut(s) | 289, 305, 502 |
| HaeIII | GGCC | 3 cut(s) | 146, 203, 237 |
| HapII | CCGG | 8 cut(s) | 54, 107, 169, 200, 244, 456, 487, 595 |
| HhaI | GCGC | 3 cut(s) | 482, 484, 532 |
| Hin1II | CATG | 1 cut(s) | 446 |
| Hin6I | GCGC | 3 cut(s) | 480, 482, 530 |
| HinP1I | GCGC | 3 cut(s) | 480, 482, 530 |
| HinfI | GANTC | 3 cut(s) | 262, 423, 562 |
| HpaII | CCGG | 8 cut(s) | 54, 107, 169, 200, 244, 456, 487, 595 |
| Hpy166II | GTNNAC | 1 cut(s) | 360 |
| Hpy188I | TCNGA | 2 cut(s) | 163, 379 |
| Hpy188III | TCNNGA | 3 cut(s) | 126, 244, 259 |
| Hpy8I | GTNNAC | 1 cut(s) | 360 |
| Hpy99I | CGWCG | 1 cut(s) | 296 |
| HpyAV | CCTTC | 6 cut(s) | 33, 59, 99, 192, 250, 461 |
| HpyCH4V | TGCA | 3 cut(s) | 70, 191, 211 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 529 |
| HpyF3I | CTNAG | 1 cut(s) | 406 |
| Hsp92II | CATG | 1 cut(s) | 446 |
| HspAI | GCGC | 3 cut(s) | 480, 482, 530 |
| Kpn2I | TCCGGA | 1 cut(s) | 243 |
| Ksp22I | TGATCA | 1 cut(s) | 411 |
| Kzo9I | GATC | 3 cut(s) | 246, 411, 475 |
| LmnI | GCTCC | 2 cut(s) | 184, 489 |
| LpnPI | CCDG | 9 cut(s) | 67, 120, 182, 213, 244, 257, 469, 500, 608 |
| LweI | GCATC | 2 cut(s) | 220, 580 |
| MaeI | CTAG | 1 cut(s) | 613 |
| MalI | GATC | 3 cut(s) | 248, 413, 477 |
| MboI | GATC | 3 cut(s) | 246, 411, 475 |
| MboII | GAAGA | 3 cut(s) | 71, 317, 518 |
| MflI | RGATCY | 1 cut(s) | 246 |
| MhlI | GDGCHC | 3 cut(s) | 161, 181, 239 |
| MluCI | AATT | 4 cut(s) | 43, 267, 466, 514 |
| MnlI | CCTC | 5 cut(s) | 145, 260, 410, 441, 591 |
| Mph1103I | ATGCAT | 1 cut(s) | 213 |
| MroI | TCCGGA | 1 cut(s) | 243 |
| MseI | TTAA | 1 cut(s) | 465 |
| MspI | CCGG | 8 cut(s) | 54, 107, 169, 200, 244, 456, 487, 595 |
| MspR9I | CCNGG | 4 cut(s) | 54, 456, 457, 595 |
| MvnI | CGCG | 6 cut(s) | 152, 291, 480, 482, 504, 530 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 529 |
| NciI | CCSGG | 4 cut(s) | 54, 456, 457, 595 |
| NdeII | GATC | 3 cut(s) | 246, 411, 475 |
| NlaIII | CATG | 1 cut(s) | 446 |
| NlaIV | GGNNCC | 5 cut(s) | 180, 237, 238, 248, 449 |
| NsiI | ATGCAT | 1 cut(s) | 213 |
| NspV | TTCGAA | 1 cut(s) | 219 |
| PauI | GCGCGC | 1 cut(s) | 480 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 149, 501 |
| PfeI | GAWTC | 3 cut(s) | 262, 423, 562 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 153 |
| PfoI | TCCNGGA | 1 cut(s) | 52 |
| PinAI | ACCGGT | 1 cut(s) | 168 |
| PkrI | GCNGC | 3 cut(s) | 290, 306, 503 |
| PspN4I | GGNNCC | 5 cut(s) | 180, 237, 238, 248, 449 |
| PspOMI | GGGCCC | 1 cut(s) | 235 |
| PspPI | GGNCC | 3 cut(s) | 109, 235, 236 |
| PsuI | RGATCY | 1 cut(s) | 246 |
| PteI | GCGCGC | 1 cut(s) | 480 |
| RsaI | GTAC | 3 cut(s) | 198, 359, 398 |
| RsaNI | GTAC | 3 cut(s) | 197, 358, 397 |
| SaqAI | TTAA | 1 cut(s) | 465 |
| SatI | GCNGC | 3 cut(s) | 289, 305, 502 |
| Sau3AI | GATC | 3 cut(s) | 246, 411, 475 |
| Sau96I | GGNCC | 3 cut(s) | 109, 235, 236 |
| ScrFI | CCNGG | 4 cut(s) | 54, 456, 457, 595 |
| SduI | GDGCHC | 3 cut(s) | 161, 181, 239 |
| SetI | ASST | 6 cut(s) | 91, 114, 359, 402, 525, 611 |
| SfaNI | GCATC | 2 cut(s) | 220, 580 |
| SfuI | TTCGAA | 1 cut(s) | 219 |
| SinI | GGWCC | 1 cut(s) | 109 |
| SmaI | CCCGGG | 1 cut(s) | 457 |
| Sse9I | AATT | 4 cut(s) | 43, 267, 466, 514 |
| SspMI | CTAG | 1 cut(s) | 613 |
| StyD4I | CCNGG | 4 cut(s) | 52, 454, 455, 593 |
| StyI | CCWWGG | 1 cut(s) | 112 |
| TaqI | TCGA | 4 cut(s) | 219, 252, 334, 402 |
| TasI | AATT | 4 cut(s) | 43, 267, 466, 514 |
| TauI | GCSGC | 3 cut(s) | 291, 307, 504 |
| TfiI | GAWTC | 3 cut(s) | 262, 423, 562 |
| Tru1I | TTAA | 1 cut(s) | 465 |
| Tru9I | TTAA | 1 cut(s) | 465 |
| TspDTI | ATGAA | 1 cut(s) | 65 |
| TspGWI | ACGGA | 1 cut(s) | 51 |
| TspMI | CCCGGG | 1 cut(s) | 455 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 153 |
| VpaK11BI | GGWCC | 1 cut(s) | 109 |
| XapI | RAATTY | 1 cut(s) | 267 |
| XmaI | CCCGGG | 1 cut(s) | 455 |
| XspI | CTAG | 1 cut(s) | 613 |
| Zsp2I | ATGCAT | 1 cut(s) | 213 |