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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 158 |
| AccII | CGCG | 4 cut(s) | 243, 245, 368, 617 |
| AclWI | GGATC | 1 cut(s) | 486 |
| AcoI | YGGCCR | 2 cut(s) | 72, 357 |
| AcyI | GRCGYC | 1 cut(s) | 298 |
| AfaI | GTAC | 1 cut(s) | 112 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 120, 149, 288, 396, 397, 460 |
| AgeI | ACCGGT | 2 cut(s) | 155, 520 |
| AluBI | AGCT | 5 cut(s) | 47, 239, 515, 613, 643 |
| AluI | AGCT | 5 cut(s) | 47, 239, 515, 613, 643 |
| Alw21I | GWGCWC | 3 cut(s) | 433, 517, 615 |
| AlwI | GGATC | 1 cut(s) | 486 |
| Ama87I | CYCGRG | 1 cut(s) | 608 |
| AoxI | GGCC | 5 cut(s) | 72, 279, 357, 400, 579 |
| ApeKI | GCWGC | 2 cut(s) | 643, 646 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 13, 45 |
| AsiGI | ACCGGT | 2 cut(s) | 155, 520 |
| AspLEI | GCGC | 3 cut(s) | 245, 247, 370 |
| AspS9I | GGNCC | 4 cut(s) | 153, 178, 400, 624 |
| AsuC2I | CCSGG | 4 cut(s) | 71, 264, 384, 438 |
| AsuHPI | GGTGA | 1 cut(s) | 142 |
| AvaI | CYCGRG | 1 cut(s) | 608 |
| AvaII | GGWCC | 3 cut(s) | 153, 178, 624 |
| BanI | GGYRCC | 1 cut(s) | 158 |
| BanII | GRGCYC | 5 cut(s) | 102, 346, 391, 517, 615 |
| BauI | CACGAG | 1 cut(s) | 426 |
| Bbv12I | GWGCWC | 3 cut(s) | 433, 517, 615 |
| BbvI | GCAGC | 2 cut(s) | 630, 633 |
| BccI | CCATC | 1 cut(s) | 281 |
| BceAI | ACGGC | 5 cut(s) | 38, 146, 343, 549, 640 |
| BcnI | CCSGG | 4 cut(s) | 71, 264, 384, 438 |
| BfaI | CTAG | 3 cut(s) | 222, 236, 575 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 71 |
| BisI | GCNGC | 4 cut(s) | 357, 360, 644, 647 |
| BlsI | GCNGC | 4 cut(s) | 358, 361, 645, 648 |
| Bme1390I | CCNGG | 4 cut(s) | 71, 264, 384, 438 |
| Bme18I | GGWCC | 3 cut(s) | 153, 178, 624 |
| BmeT110I | CYCGRG | 1 cut(s) | 608 |
| BmgT120I | GGNCC | 4 cut(s) | 153, 178, 400, 624 |
| BmiI | GGNNCC | 9 cut(s) | 154, 160, 168, 179, 180, 388, 401, 555, 602 |
| BmrFI | CCNGG | 4 cut(s) | 71, 264, 384, 438 |
| BmsI | GCATC | 1 cut(s) | 642 |
| BpuEI | CTTGAG | 3 cut(s) | 233, 487, 563 |
| BpuMI | CCSGG | 4 cut(s) | 71, 264, 384, 438 |
| BsaHI | GRCGYC | 1 cut(s) | 298 |
| BsaJI | CCNNGG | 2 cut(s) | 162, 282 |
| BsaWI | WCCGGW | 2 cut(s) | 155, 520 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 120, 149, 288, 396, 397, 460 |
| Bse118I | RCCGGY | 4 cut(s) | 74, 155, 520, 603 |
| Bse3DI | GCAATG | 1 cut(s) | 557 |
| BseDI | CCNNGG | 2 cut(s) | 162, 282 |
| BseGI | GGATG | 2 cut(s) | 280, 292 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 120, 149, 288, 396, 397, 460 |
| BseMI | GCAATG | 1 cut(s) | 557 |
| BsePI | GCGCGC | 1 cut(s) | 243 |
| BseRI | GAGGAG | 2 cut(s) | 249, 412 |
| BseX3I | CGGCCG | 2 cut(s) | 72, 357 |
| BseXI | GCAGC | 2 cut(s) | 630, 633 |
| Bsh1236I | CGCG | 4 cut(s) | 243, 245, 368, 617 |
| Bsh1285I | CGRYCG | 3 cut(s) | 75, 339, 360 |
| BshFI | GGCC | 5 cut(s) | 74, 281, 359, 402, 581 |
| BshNI | GGYRCC | 1 cut(s) | 158 |
| BshTI | ACCGGT | 2 cut(s) | 155, 520 |
| BsiEI | CGRYCG | 3 cut(s) | 75, 339, 360 |
| BsiHKAI | GWGCWC | 3 cut(s) | 433, 517, 615 |
| BsiHKCI | CYCGRG | 1 cut(s) | 608 |
| BslFI | GGGAC | 4 cut(s) | 164, 166, 294, 476 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 120, 149, 288, 396, 397, 460 |
| BsmFI | GGGAC | 4 cut(s) | 164, 166, 294, 476 |
| BsnI | GGCC | 5 cut(s) | 74, 281, 359, 402, 581 |
| BsoBI | CYCGRG | 1 cut(s) | 608 |
| Bsp1286I | GDGCHC | 6 cut(s) | 102, 346, 391, 433, 517, 615 |
| Bsp143I | GATC | 1 cut(s) | 491 |
| Bsp68I | TCGCGA | 1 cut(s) | 617 |
| BspANI | GGCC | 5 cut(s) | 74, 281, 359, 402, 581 |
| BspFNI | CGCG | 4 cut(s) | 243, 245, 368, 617 |
| BspLI | GGNNCC | 9 cut(s) | 154, 160, 168, 179, 180, 388, 401, 555, 602 |
| BspPI | GGATC | 1 cut(s) | 486 |
| BspQI | GCTCTTC | 1 cut(s) | 438 |
| BspT107I | GGYRCC | 1 cut(s) | 158 |
| BsrDI | GCAATG | 1 cut(s) | 557 |
| BsrFI | RCCGGY | 4 cut(s) | 74, 155, 520, 603 |
| BssAI | RCCGGY | 4 cut(s) | 74, 155, 520, 603 |
| BssECI | CCNNGG | 2 cut(s) | 162, 282 |
| BssHII | GCGCGC | 1 cut(s) | 243 |
| BssMI | GATC | 1 cut(s) | 491 |
| BssNI | GRCGYC | 1 cut(s) | 298 |
| BssSI | CACGAG | 1 cut(s) | 426 |
| Bst2BI | CACGAG | 1 cut(s) | 426 |
| Bst4CI | ACNGT | 2 cut(s) | 115, 594 |
| Bst6I | CTCTTC | 2 cut(s) | 177, 438 |
| BstACI | GRCGYC | 1 cut(s) | 298 |
| BstC8I | GCNNGC | 8 cut(s) | 76, 102, 241, 245, 372, 583, 615, 641 |
| BstDEI | CTNAG | 1 cut(s) | 665 |
| BstDSI | CCRYGG | 1 cut(s) | 162 |
| BstF5I | GGATG | 2 cut(s) | 280, 292 |
| BstFNI | CGCG | 4 cut(s) | 243, 245, 368, 617 |
| BstHHI | GCGC | 3 cut(s) | 245, 247, 370 |
| BstKTI | GATC | 1 cut(s) | 494 |
| BstMBI | GATC | 1 cut(s) | 491 |
| BstMCI | CGRYCG | 3 cut(s) | 75, 339, 360 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 71, 365, 619, 640, 652 |
| BstSCI | CCNGG | 4 cut(s) | 69, 262, 382, 436 |
| BstUI | CGCG | 4 cut(s) | 243, 245, 368, 617 |
| BstV1I | GCAGC | 2 cut(s) | 630, 633 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 26 |
| BstZI | CGGCCG | 2 cut(s) | 72, 357 |
| BsuRI | GGCC | 5 cut(s) | 74, 281, 359, 402, 581 |
| BtgI | CCRYGG | 1 cut(s) | 162 |
| BtsCI | GGATG | 2 cut(s) | 280, 292 |
| BtuMI | TCGCGA | 1 cut(s) | 617 |
| Cac8I | GCNNGC | 8 cut(s) | 76, 102, 241, 245, 372, 583, 615, 641 |
| CciNI | GCGGCCGC | 1 cut(s) | 357 |
| CfoI | GCGC | 3 cut(s) | 245, 247, 370 |
| Cfr10I | RCCGGY | 4 cut(s) | 74, 155, 520, 603 |
| Cfr13I | GGNCC | 4 cut(s) | 153, 178, 400, 624 |
| CpoI | CGGWCCG | 1 cut(s) | 624 |
| CseI | GACGC | 1 cut(s) | 287 |
| Csp6I | GTAC | 1 cut(s) | 111 |
| CspAI | ACCGGT | 2 cut(s) | 155, 520 |
| CspI | CGGWCCG | 1 cut(s) | 624 |
| CviAII | CATG | 2 cut(s) | 108, 548 |
| CviQI | GTAC | 1 cut(s) | 111 |
| DdeI | CTNAG | 1 cut(s) | 665 |
| DpnI | GATC | 1 cut(s) | 493 |
| DpnII | GATC | 1 cut(s) | 491 |
| EaeI | YGGCCR | 2 cut(s) | 72, 357 |
| EagI | CGGCCG | 2 cut(s) | 72, 357 |
| Eam1104I | CTCTTC | 2 cut(s) | 177, 438 |
| EarI | CTCTTC | 2 cut(s) | 177, 438 |
| Ecl136II | GAGCTC | 2 cut(s) | 515, 613 |
| EclXI | CGGCCG | 2 cut(s) | 72, 357 |
| Eco24I | GRGCYC | 5 cut(s) | 102, 346, 391, 517, 615 |
| Eco32I | GATATC | 1 cut(s) | 316 |
| Eco47I | GGWCC | 3 cut(s) | 153, 178, 624 |
| Eco52I | CGGCCG | 2 cut(s) | 72, 357 |
| Eco53kI | GAGCTC | 2 cut(s) | 515, 613 |
| Eco88I | CYCGRG | 1 cut(s) | 608 |
| EcoICRI | GAGCTC | 2 cut(s) | 515, 613 |
| EcoO109I | RGGNCCY | 2 cut(s) | 178, 400 |
| EcoRV | GATATC | 1 cut(s) | 316 |
| EcoT38I | GRGCYC | 5 cut(s) | 102, 346, 391, 517, 615 |
| FaeI | CATG | 2 cut(s) | 111, 551 |
| FaiI | YATR | 4 cut(s) | 109, 272, 353, 549 |
| FaqI | GGGAC | 4 cut(s) | 164, 166, 294, 476 |
| FatI | CATG | 2 cut(s) | 107, 547 |
| FauI | CCCGC | 6 cut(s) | 70, 109, 112, 119, 190, 219 |
| Fnu4HI | GCNGC | 4 cut(s) | 357, 360, 644, 647 |
| FokI | GGATG | 2 cut(s) | 287, 299 |
| FriOI | GRGCYC | 5 cut(s) | 102, 346, 391, 517, 615 |
| Fsp4HI | GCNGC | 4 cut(s) | 357, 360, 644, 647 |
| FspBI | CTAG | 3 cut(s) | 222, 236, 575 |
| GlaI | GCGC | 3 cut(s) | 244, 246, 369 |
| GluI | GCNGC | 4 cut(s) | 357, 360, 644, 647 |
| HaeIII | GGCC | 5 cut(s) | 74, 281, 359, 402, 581 |
| HgaI | GACGC | 1 cut(s) | 287 |
| HhaI | GCGC | 3 cut(s) | 245, 247, 370 |
| Hin1I | GRCGYC | 1 cut(s) | 298 |
| Hin1II | CATG | 2 cut(s) | 111, 551 |
| Hin6I | GCGC | 3 cut(s) | 243, 245, 368 |
| HinP1I | GCGC | 3 cut(s) | 243, 245, 368 |
| HinfI | GANTC | 4 cut(s) | 4, 307, 419, 471 |
| HphI | GGTGA | 1 cut(s) | 142 |
| Hpy166II | GTNNAC | 1 cut(s) | 133 |
| Hpy188I | TCNGA | 3 cut(s) | 348, 491, 600 |
| Hpy188III | TCNNGA | 2 cut(s) | 311, 616 |
| Hpy8I | GTNNAC | 1 cut(s) | 133 |
| Hpy99I | CGWCG | 1 cut(s) | 632 |
| HpyAV | CCTTC | 2 cut(s) | 143, 518 |
| HpyCH4III | ACNGT | 2 cut(s) | 115, 594 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 2 cut(s) | 325, 478 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 71, 365, 619, 640, 652 |
| HpyF3I | CTNAG | 1 cut(s) | 665 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92I | GRCGYC | 1 cut(s) | 298 |
| Hsp92II | CATG | 2 cut(s) | 111, 551 |
| HspAI | GCGC | 3 cut(s) | 243, 245, 368 |
| KflI | GGGWCCC | 1 cut(s) | 178 |
| KroI | GCCGGC | 1 cut(s) | 74 |
| KroNI | GCCGGC | 1 cut(s) | 76 |
| Kzo9I | GATC | 1 cut(s) | 491 |
| LguI | GCTCTTC | 1 cut(s) | 438 |
| LmnI | GCTCC | 3 cut(s) | 166, 386, 565 |
| Lsp1109I | GCAGC | 2 cut(s) | 630, 633 |
| LweI | GCATC | 1 cut(s) | 642 |
| MaeI | CTAG | 3 cut(s) | 222, 236, 575 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 2 cut(s) | 253, 529 |
| MalI | GATC | 1 cut(s) | 493 |
| MboI | GATC | 1 cut(s) | 491 |
| MboII | GAAGA | 4 cut(s) | 53, 92, 164, 425 |
| MhlI | GDGCHC | 6 cut(s) | 102, 346, 391, 433, 517, 615 |
| MluCI | AATT | 1 cut(s) | 87 |
| MlyI | GAGTC | 2 cut(s) | 316, 413 |
| MroNI | GCCGGC | 1 cut(s) | 74 |
| MspA1I | CMGCKG | 1 cut(s) | 185 |
| MspR9I | CCNGG | 4 cut(s) | 71, 264, 384, 438 |
| MvnI | CGCG | 4 cut(s) | 243, 245, 368, 617 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 71, 365, 619, 640, 652 |
| NaeI | GCCGGC | 1 cut(s) | 76 |
| NciI | CCSGG | 4 cut(s) | 71, 264, 384, 438 |
| NdeII | GATC | 1 cut(s) | 491 |
| NgoMIV | GCCGGC | 1 cut(s) | 74 |
| NlaIII | CATG | 2 cut(s) | 111, 551 |
| NlaIV | GGNNCC | 9 cut(s) | 154, 160, 168, 179, 180, 388, 401, 555, 602 |
| NmeAIII | GCCGAG | 2 cut(s) | 307, 517 |
| NmuCI | GTSAC | 1 cut(s) | 529 |
| NotI | GCGGCCGC | 1 cut(s) | 357 |
| NruI | TCGCGA | 1 cut(s) | 617 |
| PaeR7I | CTCGAG | 1 cut(s) | 608 |
| PauI | GCGCGC | 1 cut(s) | 243 |
| PciSI | GCTCTTC | 1 cut(s) | 438 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 636 |
| PdiI | GCCGGC | 1 cut(s) | 76 |
| PfeI | GAWTC | 2 cut(s) | 4, 471 |
| PfoI | TCCNGGA | 2 cut(s) | 262, 436 |
| PinAI | ACCGGT | 2 cut(s) | 155, 520 |
| PkrI | GCNGC | 4 cut(s) | 358, 361, 645, 648 |
| PleI | GAGTC | 2 cut(s) | 315, 413 |
| PpsI | GAGTC | 2 cut(s) | 315, 413 |
| PpuMI | RGGWCCY | 1 cut(s) | 178 |
| Psp124BI | GAGCTC | 2 cut(s) | 517, 615 |
| Psp5II | RGGWCCY | 1 cut(s) | 178 |
| PspN4I | GGNNCC | 9 cut(s) | 154, 160, 168, 179, 180, 388, 401, 555, 602 |
| PspPI | GGNCC | 4 cut(s) | 153, 178, 400, 624 |
| PspPPI | RGGWCCY | 1 cut(s) | 178 |
| PspXI | VCTCGAGB | 1 cut(s) | 608 |
| PteI | GCGCGC | 1 cut(s) | 243 |
| RruI | TCGCGA | 1 cut(s) | 617 |
| RsaI | GTAC | 1 cut(s) | 112 |
| RsaNI | GTAC | 1 cut(s) | 111 |
| Rsr2I | CGGWCCG | 1 cut(s) | 624 |
| RsrII | CGGWCCG | 1 cut(s) | 624 |
| SacI | GAGCTC | 2 cut(s) | 517, 615 |
| SapI | GCTCTTC | 1 cut(s) | 438 |
| SatI | GCNGC | 4 cut(s) | 357, 360, 644, 647 |
| Sau3AI | GATC | 1 cut(s) | 491 |
| Sau96I | GGNCC | 4 cut(s) | 153, 178, 400, 624 |
| SchI | GAGTC | 2 cut(s) | 316, 413 |
| ScrFI | CCNGG | 4 cut(s) | 71, 264, 384, 438 |
| SduI | GDGCHC | 6 cut(s) | 102, 346, 391, 433, 517, 615 |
| SetI | ASST | 8 cut(s) | 49, 138, 241, 255, 510, 517, 615, 645 |
| SfaNI | GCATC | 1 cut(s) | 642 |
| Sfr274I | CTCGAG | 1 cut(s) | 608 |
| SinI | GGWCC | 3 cut(s) | 153, 178, 624 |
| SlaI | CTCGAG | 1 cut(s) | 608 |
| SmlI | CTYRAG | 4 cut(s) | 248, 466, 542, 608 |
| SmoI | CTYRAG | 4 cut(s) | 248, 466, 542, 608 |
| Sse9I | AATT | 1 cut(s) | 87 |
| SspMI | CTAG | 3 cut(s) | 222, 236, 575 |
| SstI | GAGCTC | 2 cut(s) | 517, 615 |
| StyD4I | CCNGG | 4 cut(s) | 69, 262, 382, 436 |
| TaaI | ACNGT | 2 cut(s) | 115, 594 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 2 cut(s) | 511, 609 |
| TaqII | GACCGA | 1 cut(s) | 325 |
| TasI | AATT | 1 cut(s) | 87 |
| TauI | GCSGC | 2 cut(s) | 359, 362 |
| TfiI | GAWTC | 2 cut(s) | 4, 471 |
| TseFI | GTSAC | 1 cut(s) | 529 |
| TseI | GCWGC | 2 cut(s) | 643, 646 |
| Tsp45I | GTSAC | 1 cut(s) | 529 |
| TspGWI | ACGGA | 1 cut(s) | 616 |
| VpaK11BI | GGWCC | 3 cut(s) | 153, 178, 624 |
| XhoI | CTCGAG | 1 cut(s) | 608 |
| XspI | CTAG | 3 cut(s) | 222, 236, 575 |