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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 778 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1221 |
| Acc16I | TGCGCA | 1 cut(s) | 1380 |
| Acc36I | ACCTGC | 2 cut(s) | 778, 1381 |
| Acc65I | GGTACC | 1 cut(s) | 211 |
| AccB1I | GGYRCC | 1 cut(s) | 211 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1555 |
| AccII | CGCG | 9 cut(s) | 305, 549, 577, 1046, 1082, 1287, 1351, 1373, 1440 |
| AccIII | TCCGGA | 3 cut(s) | 275, 559, 829 |
| AclWI | GGATC | 4 cut(s) | 65, 143, 881, 986 |
| AcoI | YGGCCR | 3 cut(s) | 583, 616, 1083 |
| AcuI | CTGAAG | 2 cut(s) | 489, 1505 |
| AcvI | CACGTG | 1 cut(s) | 1649 |
| AfaI | GTAC | 4 cut(s) | 213, 514, 820, 861 |
| AfeI | AGCGCT | 2 cut(s) | 91, 601 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 562, 563, 581, 614, 896, 1010, 1081, 1555 |
| AgeI | ACCGGT | 1 cut(s) | 518 |
| AgsI | TTSAA | 4 cut(s) | 50, 911, 1397, 1514 |
| AjnI | CCWGG | 5 cut(s) | 64, 96, 233, 934, 1177 |
| AleI | CACNNNNGTG | 1 cut(s) | 1407 |
| Alw21I | GWGCWC | 3 cut(s) | 645, 1247, 1261 |
| Alw26I | GTCTC | 1 cut(s) | 394 |
| AlwI | GGATC | 4 cut(s) | 65, 143, 881, 986 |
| Ama87I | CYCGRG | 1 cut(s) | 1124 |
| Aor13HI | TCCGGA | 3 cut(s) | 275, 559, 829 |
| Aor51HI | AGCGCT | 2 cut(s) | 91, 601 |
| AoxI | GGCC | 9 cut(s) | 583, 609, 616, 1047, 1083, 1411, 1524, 1545, 1566 |
| ApeKI | GCWGC | 6 cut(s) | 701, 704, 723, 1207, 1210, 1610 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 410, 442 |
| AsiGI | ACCGGT | 1 cut(s) | 518 |
| Asp718I | GGTACC | 1 cut(s) | 211 |
| AspLEI | GCGC | 9 cut(s) | 92, 258, 307, 574, 579, 602, 723, 1351, 1381 |
| AspS9I | GGNCC | 7 cut(s) | 278, 1048, 1223, 1503, 1525, 1546, 1567 |
| AsuC2I | CCSGG | 2 cut(s) | 608, 897 |
| AsuHPI | GGTGA | 3 cut(s) | 1291, 1319, 1573 |
| AvaI | CYCGRG | 1 cut(s) | 1124 |
| AvaII | GGWCC | 3 cut(s) | 278, 1223, 1503 |
| AxyI | CCTNAGG | 1 cut(s) | 843 |
| BalI | TGGCCA | 1 cut(s) | 618 |
| BanI | GGYRCC | 1 cut(s) | 211 |
| BanII | GRGCYC | 7 cut(s) | 270, 331, 530, 654, 1005, 1247, 1261 |
| BbrPI | CACGTG | 1 cut(s) | 1649 |
| Bbv12I | GWGCWC | 3 cut(s) | 645, 1247, 1261 |
| BbvCI | CCTCAGC | 2 cut(s) | 449, 972 |
| BbvI | GCAGC | 6 cut(s) | 691, 713, 735, 1194, 1222, 1622 |
| BccI | CCATC | 3 cut(s) | 344, 545, 1267 |
| BceAI | ACGGC | 1 cut(s) | 1581 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 149, 183, 410, 444 |
| BciT130I | CCWGG | 5 cut(s) | 66, 98, 235, 936, 1179 |
| BciVI | GTATCC | 1 cut(s) | 359 |
| BclI | TGATCA | 1 cut(s) | 783 |
| BcnI | CCSGG | 2 cut(s) | 608, 897 |
| BcoDI | GTCTC | 1 cut(s) | 394 |
| BfaI | CTAG | 4 cut(s) | 308, 809, 1386, 1607 |
| BfmI | CTRYAG | 1 cut(s) | 1208 |
| BfoI | RGCGCY | 2 cut(s) | 93, 603 |
| BfuAI | ACCTGC | 2 cut(s) | 778, 1381 |
| BfuI | GTATCC | 1 cut(s) | 359 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1619 |
| BglII | AGATCT | 2 cut(s) | 1457, 1482 |
| Bme1390I | CCNGG | 7 cut(s) | 66, 98, 235, 608, 897, 936, 1179 |
| Bme18I | GGWCC | 3 cut(s) | 278, 1223, 1503 |
| BmeT110I | CYCGRG | 1 cut(s) | 1124 |
| BmgT120I | GGNCC | 7 cut(s) | 278, 1048, 1223, 1503, 1525, 1546, 1567 |
| BmrFI | CCNGG | 7 cut(s) | 66, 98, 235, 608, 897, 936, 1179 |
| BmrI | ACTGGG | 1 cut(s) | 1543 |
| BmsI | GCATC | 3 cut(s) | 220, 468, 823 |
| BmuI | ACTGGG | 1 cut(s) | 1543 |
| Bpu10I | CCTNAGC | 4 cut(s) | 449, 804, 868, 972 |
| BpuEI | CTTGAG | 5 cut(s) | 858, 1050, 1245, 1595, 1626 |
| BpuMI | CCSGG | 2 cut(s) | 608, 897 |
| Bsa29I | ATCGAT | 1 cut(s) | 778 |
| BsaAI | YACGTR | 1 cut(s) | 1649 |
| BsaBI | GATNNNNATC | 1 cut(s) | 891 |
| BsaJI | CCNNGG | 4 cut(s) | 606, 749, 1080, 1302 |
| BsaWI | WCCGGW | 5 cut(s) | 275, 518, 559, 829, 1033 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1326, 1356 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 562, 563, 581, 614, 896, 1010, 1081, 1555 |
| Bse118I | RCCGGY | 1 cut(s) | 518 |
| Bse1I | ACTGG | 3 cut(s) | 190, 947, 1549 |
| Bse21I | CCTNAGG | 1 cut(s) | 843 |
| Bse8I | GATNNNNATC | 1 cut(s) | 891 |
| BseAI | TCCGGA | 3 cut(s) | 275, 559, 829 |
| BseBI | CCWGG | 5 cut(s) | 66, 98, 235, 936, 1179 |
| BseCI | ATCGAT | 1 cut(s) | 778 |
| BseDI | CCNNGG | 4 cut(s) | 606, 749, 1080, 1302 |
| BseGI | GGATG | 2 cut(s) | 838, 1174 |
| BseJI | GATNNNNATC | 1 cut(s) | 891 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 562, 563, 581, 614, 896, 1010, 1081, 1555 |
| BseMII | CTCAG | 9 cut(s) | 138, 166, 344, 440, 639, 795, 834, 963, 990 |
| BseNI | ACTGG | 3 cut(s) | 190, 947, 1549 |
| BseRI | GAGGAG | 3 cut(s) | 109, 112, 860 |
| BseX3I | CGGCCG | 2 cut(s) | 583, 1083 |
| BseXI | GCAGC | 6 cut(s) | 691, 713, 735, 1194, 1222, 1622 |
| BseYI | CCCAGC | 1 cut(s) | 1016 |
| BsgI | GTGCAG | 1 cut(s) | 903 |
| Bsh1236I | CGCG | 9 cut(s) | 305, 549, 577, 1046, 1082, 1287, 1351, 1373, 1440 |
| Bsh1285I | CGRYCG | 4 cut(s) | 519, 586, 1086, 1371 |
| BshFI | GGCC | 9 cut(s) | 585, 611, 618, 1049, 1085, 1413, 1526, 1547, 1568 |
| BshNI | GGYRCC | 1 cut(s) | 211 |
| BshTI | ACCGGT | 1 cut(s) | 518 |
| BshVI | ATCGAT | 1 cut(s) | 778 |
| BsiEI | CGRYCG | 4 cut(s) | 519, 586, 1086, 1371 |
| BsiHKAI | GWGCWC | 3 cut(s) | 645, 1247, 1261 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1124 |
| BsiSI | CCGG | 8 cut(s) | 276, 519, 560, 582, 608, 830, 897, 1034 |
| BslFI | GGGAC | 5 cut(s) | 1033, 1214, 1420, 1487, 1612 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 562, 563, 581, 614, 896, 1010, 1081, 1555 |
| BsmAI | GTCTC | 1 cut(s) | 394 |
| BsmFI | GGGAC | 5 cut(s) | 1033, 1214, 1420, 1487, 1612 |
| BsnI | GGCC | 9 cut(s) | 585, 611, 618, 1049, 1085, 1413, 1526, 1547, 1568 |
| BsoBI | CYCGRG | 1 cut(s) | 1124 |
| Bsp1286I | GDGCHC | 8 cut(s) | 270, 331, 530, 645, 654, 1005, 1247, 1261 |
| Bsp13I | TCCGGA | 3 cut(s) | 275, 559, 829 |
| Bsp1407I | TGTACA | 1 cut(s) | 859 |
| Bsp19I | CCATGG | 1 cut(s) | 749 |
| Bsp68I | TCGCGA | 1 cut(s) | 549 |
| BspANI | GGCC | 9 cut(s) | 585, 611, 618, 1049, 1085, 1413, 1526, 1547, 1568 |
| BspCNI | CTCAG | 9 cut(s) | 137, 165, 343, 441, 640, 796, 835, 964, 991 |
| BspDI | ATCGAT | 1 cut(s) | 778 |
| BspEI | TCCGGA | 3 cut(s) | 275, 559, 829 |
| BspFNI | CGCG | 9 cut(s) | 305, 549, 577, 1046, 1082, 1287, 1351, 1373, 1440 |
| BspMAI | CTGCAG | 1 cut(s) | 1212 |
| BspMI | ACCTGC | 2 cut(s) | 778, 1381 |
| BspPI | GGATC | 4 cut(s) | 65, 143, 881, 986 |
| BspT107I | GGYRCC | 1 cut(s) | 211 |
| BsrFI | RCCGGY | 1 cut(s) | 518 |
| BsrGI | TGTACA | 1 cut(s) | 859 |
| BsrI | ACTGG | 3 cut(s) | 190, 947, 1549 |
| BssAI | RCCGGY | 1 cut(s) | 518 |
| BssECI | CCNNGG | 4 cut(s) | 606, 749, 1080, 1302 |
| BssT1I | CCWWGG | 1 cut(s) | 749 |
| Bst2UI | CCWGG | 5 cut(s) | 66, 98, 235, 936, 1179 |
| Bst4CI | ACNGT | 1 cut(s) | 697 |
| Bst6I | CTCTTC | 3 cut(s) | 443, 508, 676 |
| BstAUI | TGTACA | 1 cut(s) | 859 |
| BstBAI | YACGTR | 1 cut(s) | 1649 |
| BstDSI | CCRYGG | 2 cut(s) | 749, 1080 |
| BstF5I | GGATG | 2 cut(s) | 838, 1174 |
| BstFNI | CGCG | 9 cut(s) | 305, 549, 577, 1046, 1082, 1287, 1351, 1373, 1440 |
| BstH2I | RGCGCY | 2 cut(s) | 93, 603 |
| BstHHI | GCGC | 9 cut(s) | 92, 258, 307, 574, 579, 602, 723, 1351, 1381 |
| BstMAI | GTCTC | 1 cut(s) | 394 |
| BstMCI | CGRYCG | 4 cut(s) | 519, 586, 1086, 1371 |
| BstNI | CCWGG | 5 cut(s) | 66, 98, 235, 936, 1179 |
| BstNSI | RCATGY | 1 cut(s) | 301 |
| BstSCI | CCNGG | 7 cut(s) | 64, 96, 233, 606, 895, 934, 1177 |
| BstSFI | CTRYAG | 1 cut(s) | 1208 |
| BstUI | CGCG | 9 cut(s) | 305, 549, 577, 1046, 1082, 1287, 1351, 1373, 1440 |
| BstV1I | GCAGC | 6 cut(s) | 691, 713, 735, 1194, 1222, 1622 |
| BstX2I | RGATCY | 2 cut(s) | 1457, 1482 |
| BstYI | RGATCY | 2 cut(s) | 1457, 1482 |
| BstZI | CGGCCG | 2 cut(s) | 583, 1083 |
| Bsu15I | ATCGAT | 1 cut(s) | 778 |
| Bsu36I | CCTNAGG | 1 cut(s) | 843 |
| BsuI | GTATCC | 1 cut(s) | 359 |
| BsuRI | GGCC | 9 cut(s) | 585, 611, 618, 1049, 1085, 1413, 1526, 1547, 1568 |
| BsuTUI | ATCGAT | 1 cut(s) | 778 |
| BtgI | CCRYGG | 2 cut(s) | 749, 1080 |
| BtgZI | GCGATG | 1 cut(s) | 1637 |
| BtsCI | GGATG | 2 cut(s) | 838, 1174 |
| BtsIMutI | CAGTG | 2 cut(s) | 645, 996 |
| BtuMI | TCGCGA | 1 cut(s) | 549 |
| BveI | ACCTGC | 2 cut(s) | 778, 1381 |
| CciNI | GCGGCCGC | 1 cut(s) | 1083 |
| CfoI | GCGC | 9 cut(s) | 92, 258, 307, 574, 579, 602, 723, 1351, 1381 |
| Cfr10I | RCCGGY | 1 cut(s) | 518 |
| Cfr13I | GGNCC | 7 cut(s) | 278, 1048, 1223, 1503, 1525, 1546, 1567 |
| Cfr42I | CCGCGG | 1 cut(s) | 1083 |
| ClaI | ATCGAT | 1 cut(s) | 778 |
| CseI | GACGC | 2 cut(s) | 1052, 1422 |
| Csp6I | GTAC | 4 cut(s) | 212, 513, 819, 860 |
| CspAI | ACCGGT | 1 cut(s) | 518 |
| CviAII | CATG | 2 cut(s) | 298, 750 |
| CviQI | GTAC | 4 cut(s) | 212, 513, 819, 860 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1221 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1221 |
| EaeI | YGGCCR | 3 cut(s) | 583, 616, 1083 |
| EagI | CGGCCG | 2 cut(s) | 583, 1083 |
| Eam1104I | CTCTTC | 3 cut(s) | 443, 508, 676 |
| EarI | CTCTTC | 3 cut(s) | 443, 508, 676 |
| Ecl136II | GAGCTC | 2 cut(s) | 1245, 1259 |
| EclXI | CGGCCG | 2 cut(s) | 583, 1083 |
| Eco130I | CCWWGG | 1 cut(s) | 749 |
| Eco24I | GRGCYC | 7 cut(s) | 270, 331, 530, 654, 1005, 1247, 1261 |
| Eco47I | GGWCC | 3 cut(s) | 278, 1223, 1503 |
| Eco47III | AGCGCT | 2 cut(s) | 91, 601 |
| Eco52I | CGGCCG | 2 cut(s) | 583, 1083 |
| Eco53kI | GAGCTC | 2 cut(s) | 1245, 1259 |
| Eco57I | CTGAAG | 2 cut(s) | 489, 1505 |
| Eco72I | CACGTG | 1 cut(s) | 1649 |
| Eco81I | CCTNAGG | 1 cut(s) | 843 |
| Eco88I | CYCGRG | 1 cut(s) | 1124 |
| EcoICRI | GAGCTC | 2 cut(s) | 1245, 1259 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1223 |
| EcoRII | CCWGG | 5 cut(s) | 64, 96, 233, 934, 1177 |
| EcoT14I | CCWWGG | 1 cut(s) | 749 |
| EcoT38I | GRGCYC | 7 cut(s) | 270, 331, 530, 654, 1005, 1247, 1261 |
| ErhI | CCWWGG | 1 cut(s) | 749 |
| FaeI | CATG | 2 cut(s) | 301, 753 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 867, 899 |
| FaqI | GGGAC | 5 cut(s) | 1033, 1214, 1420, 1487, 1612 |
| FatI | CATG | 2 cut(s) | 297, 749 |
| FauI | CCCGC | 3 cut(s) | 194, 291, 1445 |
| FbaI | TGATCA | 1 cut(s) | 783 |
| FokI | GGATG | 2 cut(s) | 845, 1161 |
| FriOI | GRGCYC | 7 cut(s) | 270, 331, 530, 654, 1005, 1247, 1261 |
| FspBI | CTAG | 4 cut(s) | 308, 809, 1386, 1607 |
| FspI | TGCGCA | 1 cut(s) | 1380 |
| GlaI | GCGC | 9 cut(s) | 91, 257, 306, 573, 578, 601, 722, 1350, 1380 |
| GsaI | CCCAGC | 1 cut(s) | 1020 |
| HaeII | RGCGCY | 2 cut(s) | 93, 603 |
| HaeIII | GGCC | 9 cut(s) | 585, 611, 618, 1049, 1085, 1413, 1526, 1547, 1568 |
| HapII | CCGG | 8 cut(s) | 276, 519, 560, 582, 608, 830, 897, 1034 |
| HgaI | GACGC | 2 cut(s) | 1052, 1422 |
| HhaI | GCGC | 9 cut(s) | 92, 258, 307, 574, 579, 602, 723, 1351, 1381 |
| Hin1II | CATG | 2 cut(s) | 301, 753 |
| Hin6I | GCGC | 9 cut(s) | 90, 256, 305, 572, 577, 600, 721, 1349, 1379 |
| HinP1I | GCGC | 9 cut(s) | 90, 256, 305, 572, 577, 600, 721, 1349, 1379 |
| HinfI | GANTC | 7 cut(s) | 33, 341, 406, 544, 665, 733, 1442 |
| HpaII | CCGG | 8 cut(s) | 276, 519, 560, 582, 608, 830, 897, 1034 |
| HphI | GGTGA | 3 cut(s) | 1291, 1319, 1573 |
| Hpy166II | GTNNAC | 1 cut(s) | 349 |
| Hpy188I | TCNGA | 7 cut(s) | 127, 333, 443, 496, 676, 1503, 1661 |
| Hpy8I | GTNNAC | 1 cut(s) | 349 |
| Hpy99I | CGWCG | 2 cut(s) | 422, 1061 |
| HpyAV | CCTTC | 5 cut(s) | 282, 356, 836, 1508, 1624 |
| HpyCH4III | ACNGT | 1 cut(s) | 697 |
| HpyCH4IV | ACGT | 1 cut(s) | 1648 |
| HpyCH4V | TGCA | 6 cut(s) | 431, 836, 920, 1210, 1418, 1480 |
| HpySE526I | ACGT | 1 cut(s) | 1648 |
| Hsp92II | CATG | 2 cut(s) | 301, 753 |
| HspAI | GCGC | 9 cut(s) | 90, 256, 305, 572, 577, 600, 721, 1349, 1379 |
| Kpn2I | TCCGGA | 3 cut(s) | 275, 559, 829 |
| KpnI | GGTACC | 1 cut(s) | 215 |
| Ksp22I | TGATCA | 1 cut(s) | 783 |
| KspI | CCGCGG | 1 cut(s) | 1083 |
| LmnI | GCTCC | 5 cut(s) | 175, 273, 584, 847, 1013 |
| Lsp1109I | GCAGC | 6 cut(s) | 691, 713, 735, 1194, 1222, 1622 |
| LweI | GCATC | 3 cut(s) | 220, 468, 823 |
| MaeI | CTAG | 4 cut(s) | 308, 809, 1386, 1607 |
| MaeII | ACGT | 1 cut(s) | 1648 |
| MaeIII | GTNAC | 1 cut(s) | 1561 |
| MboII | GAAGA | 9 cut(s) | 42, 53, 308, 371, 430, 495, 663, 770, 824 |
| MfeI | CAATTG | 3 cut(s) | 206, 397, 1529 |
| MflI | RGATCY | 2 cut(s) | 1457, 1482 |
| MhlI | GDGCHC | 8 cut(s) | 270, 331, 530, 645, 654, 1005, 1247, 1261 |
| MlsI | TGGCCA | 1 cut(s) | 618 |
| MluCI | AATT | 5 cut(s) | 18, 206, 397, 930, 1529 |
| MluNI | TGGCCA | 1 cut(s) | 618 |
| MlyI | GAGTC | 2 cut(s) | 335, 400 |
| Mox20I | TGGCCA | 1 cut(s) | 618 |
| MroI | TCCGGA | 3 cut(s) | 275, 559, 829 |
| MscI | TGGCCA | 1 cut(s) | 618 |
| MseI | TTAA | 1 cut(s) | 1356 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1407 |
| Msp20I | TGGCCA | 1 cut(s) | 618 |
| MspA1I | CMGCKG | 4 cut(s) | 286, 704, 1082, 1088 |
| MspI | CCGG | 8 cut(s) | 276, 519, 560, 582, 608, 830, 897, 1034 |
| MspR9I | CCNGG | 7 cut(s) | 66, 98, 235, 608, 897, 936, 1179 |
| MteI | GCGCNGCGC | 1 cut(s) | 575 |
| MunI | CAATTG | 3 cut(s) | 206, 397, 1529 |
| MvaI | CCWGG | 5 cut(s) | 66, 98, 235, 936, 1179 |
| MvnI | CGCG | 9 cut(s) | 305, 549, 577, 1046, 1082, 1287, 1351, 1373, 1440 |
| NciI | CCSGG | 2 cut(s) | 608, 897 |
| NcoI | CCATGG | 1 cut(s) | 749 |
| NlaIII | CATG | 2 cut(s) | 301, 753 |
| NmeAIII | GCCGAG | 1 cut(s) | 1266 |
| NmuCI | GTSAC | 1 cut(s) | 1561 |
| NotI | GCGGCCGC | 1 cut(s) | 1083 |
| NruI | TCGCGA | 1 cut(s) | 549 |
| NsbI | TGCGCA | 1 cut(s) | 1380 |
| NspI | RCATGY | 1 cut(s) | 301 |
| OliI | CACNNNNGTG | 1 cut(s) | 1407 |
| PaeI | GCATGC | 1 cut(s) | 301 |
| PaqCI | CACCTGC | 1 cut(s) | 778 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 521, 546, 1288 |
| PfeI | GAWTC | 5 cut(s) | 33, 544, 665, 733, 1442 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1555 |
| PfoI | TCCNGGA | 1 cut(s) | 1177 |
| PinAI | ACCGGT | 1 cut(s) | 518 |
| PleI | GAGTC | 2 cut(s) | 335, 400 |
| PmaCI | CACGTG | 1 cut(s) | 1649 |
| PmlI | CACGTG | 1 cut(s) | 1649 |
| PpsI | GAGTC | 2 cut(s) | 335, 400 |
| Ppu21I | YACGTR | 1 cut(s) | 1649 |
| PpuMI | RGGWCCY | 1 cut(s) | 1223 |
| Psp124BI | GAGCTC | 2 cut(s) | 1247, 1261 |
| Psp5II | RGGWCCY | 1 cut(s) | 1223 |
| Psp6I | CCWGG | 5 cut(s) | 64, 96, 233, 934, 1177 |
| PspCI | CACGTG | 1 cut(s) | 1649 |
| PspFI | CCCAGC | 1 cut(s) | 1016 |
| PspGI | CCWGG | 5 cut(s) | 64, 96, 233, 934, 1177 |
| PspPI | GGNCC | 7 cut(s) | 278, 1048, 1223, 1503, 1525, 1546, 1567 |
| PspPPI | RGGWCCY | 1 cut(s) | 1223 |
| PstI | CTGCAG | 1 cut(s) | 1212 |
| PsuI | RGATCY | 2 cut(s) | 1457, 1482 |
| PvuII | CAGCTG | 1 cut(s) | 704 |
| RruI | TCGCGA | 1 cut(s) | 549 |
| RsaI | GTAC | 4 cut(s) | 213, 514, 820, 861 |
| RsaNI | GTAC | 4 cut(s) | 212, 513, 819, 860 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1407 |
| SacI | GAGCTC | 2 cut(s) | 1247, 1261 |
| SacII | CCGCGG | 1 cut(s) | 1083 |
| SaqAI | TTAA | 1 cut(s) | 1356 |
| Sau96I | GGNCC | 7 cut(s) | 278, 1048, 1223, 1503, 1525, 1546, 1567 |
| SchI | GAGTC | 2 cut(s) | 335, 400 |
| ScrFI | CCNGG | 7 cut(s) | 66, 98, 235, 608, 897, 936, 1179 |
| SduI | GDGCHC | 8 cut(s) | 270, 331, 530, 645, 654, 1005, 1247, 1261 |
| SfaNI | GCATC | 3 cut(s) | 220, 468, 823 |
| SfcI | CTRYAG | 1 cut(s) | 1208 |
| Sfr303I | CCGCGG | 1 cut(s) | 1083 |
| SgrBI | CCGCGG | 1 cut(s) | 1083 |
| SinI | GGWCC | 3 cut(s) | 278, 1223, 1503 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1407 |
| SmlI | CTYRAG | 5 cut(s) | 873, 1065, 1260, 1574, 1641 |
| SmoI | CTYRAG | 5 cut(s) | 873, 1065, 1260, 1574, 1641 |
| SphI | GCATGC | 1 cut(s) | 301 |
| Sse9I | AATT | 5 cut(s) | 18, 206, 397, 930, 1529 |
| SspI | AATATT | 1 cut(s) | 1268 |
| SspMI | CTAG | 4 cut(s) | 308, 809, 1386, 1607 |
| SstI | GAGCTC | 2 cut(s) | 1247, 1261 |
| StyD4I | CCNGG | 7 cut(s) | 64, 96, 233, 606, 895, 934, 1177 |
| StyI | CCWWGG | 1 cut(s) | 749 |
| TaaI | ACNGT | 1 cut(s) | 697 |
| TaiI | ACGT | 1 cut(s) | 1651 |
| TaqI | TCGA | 8 cut(s) | 339, 731, 778, 1059, 1164, 1317, 1536, 1617 |
| TaqII | GACCGA | 1 cut(s) | 185 |
| TasI | AATT | 5 cut(s) | 18, 206, 397, 930, 1529 |
| TatI | WGTACW | 2 cut(s) | 818, 859 |
| TfiI | GAWTC | 5 cut(s) | 33, 544, 665, 733, 1442 |
| Tru1I | TTAA | 1 cut(s) | 1356 |
| Tru9I | TTAA | 1 cut(s) | 1356 |
| TscAI | CASTG | 2 cut(s) | 652, 1003 |
| TseFI | GTSAC | 1 cut(s) | 1561 |
| TseI | GCWGC | 6 cut(s) | 701, 704, 723, 1207, 1210, 1610 |
| Tsp45I | GTSAC | 1 cut(s) | 1561 |
| TspDTI | ATGAA | 3 cut(s) | 162, 777, 1206 |
| TspGWI | ACGGA | 2 cut(s) | 366, 382 |
| TspRI | CASTG | 2 cut(s) | 652, 1003 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1555 |
| VpaK11BI | GGWCC | 3 cut(s) | 278, 1223, 1503 |
| XceI | RCATGY | 1 cut(s) | 301 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 343 |
| XspI | CTAG | 4 cut(s) | 308, 809, 1386, 1607 |