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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 5 cut(s) | 90, 111, 113, 169, 280 |
| AccIII | TCCGGA | 1 cut(s) | 204 |
| AciI | CCGC | 5 cut(s) | 109, 252, 280, 380, 398 |
| AclWI | GGATC | 2 cut(s) | 65, 78 |
| AcoI | YGGCCR | 1 cut(s) | 281 |
| AcyI | GRCGYC | 1 cut(s) | 314 |
| AfaI | GTAC | 1 cut(s) | 21 |
| AgsI | TTSAA | 1 cut(s) | 292 |
| AluBI | AGCT | 1 cut(s) | 155 |
| AluI | AGCT | 1 cut(s) | 155 |
| Alw26I | GTCTC | 1 cut(s) | 249 |
| AlwI | GGATC | 2 cut(s) | 65, 78 |
| Ama87I | CYCGRG | 1 cut(s) | 368 |
| Aor13HI | TCCGGA | 1 cut(s) | 204 |
| AoxI | GGCC | 2 cut(s) | 99, 281 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 259, 291 |
| AspA2I | CCTAGG | 1 cut(s) | 65 |
| AspLEI | GCGC | 4 cut(s) | 92, 113, 142, 171 |
| AsuC2I | CCSGG | 1 cut(s) | 414 |
| AvaI | CYCGRG | 1 cut(s) | 368 |
| AvrII | CCTAGG | 1 cut(s) | 65 |
| BamHI | GGATCC | 1 cut(s) | 70 |
| BccI | CCATC | 2 cut(s) | 46, 292 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 301, 312, 335, 346, 389, 423 |
| BclI | TGATCA | 1 cut(s) | 222 |
| BcnI | CCSGG | 1 cut(s) | 414 |
| BcoDI | GTCTC | 1 cut(s) | 249 |
| BfaI | CTAG | 1 cut(s) | 66 |
| BfmI | CTRYAG | 1 cut(s) | 79 |
| BisI | GCNGC | 2 cut(s) | 109, 281 |
| BlnI | CCTAGG | 1 cut(s) | 65 |
| BlsI | GCNGC | 2 cut(s) | 110, 282 |
| Bme1390I | CCNGG | 1 cut(s) | 414 |
| BmeT110I | CYCGRG | 1 cut(s) | 368 |
| BmiI | GGNNCC | 1 cut(s) | 72 |
| BmrFI | CCNGG | 1 cut(s) | 414 |
| BmsI | GCATC | 2 cut(s) | 309, 409 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 341, 373 |
| BpuMI | CCSGG | 1 cut(s) | 414 |
| BsaBI | GATNNNNATC | 2 cut(s) | 37, 221 |
| BsaHI | GRCGYC | 1 cut(s) | 314 |
| BsaJI | CCNNGG | 2 cut(s) | 65, 143 |
| BsaWI | WCCGGW | 1 cut(s) | 204 |
| Bse8I | GATNNNNATC | 2 cut(s) | 37, 221 |
| BseAI | TCCGGA | 1 cut(s) | 204 |
| BseDI | CCNNGG | 2 cut(s) | 65, 143 |
| BseGI | GGATG | 3 cut(s) | 38, 270, 400 |
| BseJI | GATNNNNATC | 2 cut(s) | 37, 221 |
| Bsh1236I | CGCG | 5 cut(s) | 90, 111, 113, 169, 280 |
| Bsh1285I | CGRYCG | 1 cut(s) | 413 |
| BshFI | GGCC | 2 cut(s) | 101, 283 |
| BsiEI | CGRYCG | 1 cut(s) | 413 |
| BsiHKCI | CYCGRG | 1 cut(s) | 368 |
| BsiSI | CCGG | 2 cut(s) | 205, 413 |
| BsmAI | GTCTC | 1 cut(s) | 249 |
| BsmI | GAATGC | 1 cut(s) | 214 |
| BsnI | GGCC | 2 cut(s) | 101, 283 |
| BsoBI | CYCGRG | 1 cut(s) | 368 |
| Bsp13I | TCCGGA | 1 cut(s) | 204 |
| Bsp143I | GATC | 3 cut(s) | 70, 85, 222 |
| BspACI | CCGC | 5 cut(s) | 109, 252, 280, 380, 398 |
| BspANI | GGCC | 2 cut(s) | 101, 283 |
| BspEI | TCCGGA | 1 cut(s) | 204 |
| BspFNI | CGCG | 5 cut(s) | 90, 111, 113, 169, 280 |
| BspLI | GGNNCC | 1 cut(s) | 72 |
| BspPI | GGATC | 2 cut(s) | 65, 78 |
| BssECI | CCNNGG | 2 cut(s) | 65, 143 |
| BssMI | GATC | 3 cut(s) | 70, 85, 222 |
| BssNI | GRCGYC | 1 cut(s) | 314 |
| BssT1I | CCWWGG | 1 cut(s) | 65 |
| Bst6I | CTCTTC | 1 cut(s) | 280 |
| BstACI | GRCGYC | 1 cut(s) | 314 |
| BstC8I | GCNNGC | 7 cut(s) | 94, 138, 186, 335, 355, 375, 393 |
| BstF5I | GGATG | 3 cut(s) | 38, 270, 400 |
| BstFNI | CGCG | 5 cut(s) | 90, 111, 113, 169, 280 |
| BstHHI | GCGC | 4 cut(s) | 92, 113, 142, 171 |
| BstKTI | GATC | 3 cut(s) | 73, 88, 225 |
| BstMAI | GTCTC | 1 cut(s) | 249 |
| BstMBI | GATC | 3 cut(s) | 70, 85, 222 |
| BstMCI | CGRYCG | 1 cut(s) | 413 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 98, 379, 388, 397 |
| BstSCI | CCNGG | 1 cut(s) | 412 |
| BstSFI | CTRYAG | 1 cut(s) | 79 |
| BstUI | CGCG | 5 cut(s) | 90, 111, 113, 169, 280 |
| BstX2I | RGATCY | 1 cut(s) | 70 |
| BstYI | RGATCY | 1 cut(s) | 70 |
| BsuRI | GGCC | 2 cut(s) | 101, 283 |
| BtsCI | GGATG | 3 cut(s) | 38, 270, 400 |
| BtsIMutI | CAGTG | 1 cut(s) | 254 |
| Cac8I | GCNNGC | 7 cut(s) | 94, 138, 186, 335, 355, 375, 393 |
| CfoI | GCGC | 4 cut(s) | 92, 113, 142, 171 |
| CseI | GACGC | 1 cut(s) | 322 |
| Csp6I | GTAC | 1 cut(s) | 20 |
| CviJI | RGCY | 7 cut(s) | 101, 136, 155, 198, 283, 373, 395 |
| CviKI_1 | RGCY | 7 cut(s) | 101, 136, 155, 198, 283, 373, 395 |
| CviQI | GTAC | 1 cut(s) | 20 |
| DpnI | GATC | 3 cut(s) | 72, 87, 224 |
| DpnII | GATC | 3 cut(s) | 70, 85, 222 |
| EaeI | YGGCCR | 1 cut(s) | 281 |
| Eam1104I | CTCTTC | 1 cut(s) | 280 |
| EarI | CTCTTC | 1 cut(s) | 280 |
| EciI | GGCGGA | 1 cut(s) | 369 |
| Eco130I | CCWWGG | 1 cut(s) | 65 |
| Eco32I | GATATC | 2 cut(s) | 130, 304 |
| Eco88I | CYCGRG | 1 cut(s) | 368 |
| EcoRV | GATATC | 2 cut(s) | 130, 304 |
| EcoT14I | CCWWGG | 1 cut(s) | 65 |
| ErhI | CCWWGG | 1 cut(s) | 65 |
| FaiI | YATR | 2 cut(s) | 81, 221 |
| FauI | CCCGC | 1 cut(s) | 405 |
| FbaI | TGATCA | 1 cut(s) | 222 |
| Fnu4HI | GCNGC | 2 cut(s) | 109, 281 |
| FokI | GGATG | 3 cut(s) | 25, 277, 387 |
| Fsp4HI | GCNGC | 2 cut(s) | 109, 281 |
| FspBI | CTAG | 1 cut(s) | 66 |
| GlaI | GCGC | 4 cut(s) | 91, 112, 141, 170 |
| GluI | GCNGC | 2 cut(s) | 109, 281 |
| HaeIII | GGCC | 2 cut(s) | 101, 283 |
| HapII | CCGG | 2 cut(s) | 205, 413 |
| HgaI | GACGC | 1 cut(s) | 322 |
| HhaI | GCGC | 4 cut(s) | 92, 113, 142, 171 |
| Hin1I | GRCGYC | 1 cut(s) | 314 |
| Hin6I | GCGC | 4 cut(s) | 90, 111, 140, 169 |
| HinP1I | GCGC | 4 cut(s) | 90, 111, 140, 169 |
| HinfI | GANTC | 1 cut(s) | 33 |
| HpaII | CCGG | 2 cut(s) | 205, 413 |
| Hpy188I | TCNGA | 2 cut(s) | 127, 343 |
| Hpy188III | TCNNGA | 1 cut(s) | 205 |
| Hpy99I | CGWCG | 1 cut(s) | 316 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 98, 379, 388, 397 |
| Hsp92I | GRCGYC | 1 cut(s) | 314 |
| HspAI | GCGC | 4 cut(s) | 90, 111, 140, 169 |
| Kpn2I | TCCGGA | 1 cut(s) | 204 |
| Ksp22I | TGATCA | 1 cut(s) | 222 |
| Kzo9I | GATC | 3 cut(s) | 70, 85, 222 |
| LmnI | GCTCC | 1 cut(s) | 382 |
| LpnPI | CCDG | 3 cut(s) | 202, 218, 387 |
| LweI | GCATC | 2 cut(s) | 309, 409 |
| MaeI | CTAG | 1 cut(s) | 66 |
| MalI | GATC | 3 cut(s) | 72, 87, 224 |
| MboI | GATC | 3 cut(s) | 70, 85, 222 |
| MboII | GAAGA | 5 cut(s) | 42, 226, 267, 304, 356 |
| MflI | RGATCY | 1 cut(s) | 70 |
| MnlI | CCTC | 4 cut(s) | 15, 138, 231, 343 |
| MroI | TCCGGA | 1 cut(s) | 204 |
| MseI | TTAA | 1 cut(s) | 200 |
| MspI | CCGG | 2 cut(s) | 205, 413 |
| MspR9I | CCNGG | 1 cut(s) | 414 |
| Mva1269I | GAATGC | 1 cut(s) | 214 |
| MvnI | CGCG | 5 cut(s) | 90, 111, 113, 169, 280 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 98, 379, 388, 397 |
| NciI | CCSGG | 1 cut(s) | 414 |
| NdeII | GATC | 3 cut(s) | 70, 85, 222 |
| NlaIV | GGNNCC | 1 cut(s) | 72 |
| NmeAIII | GCCGAG | 1 cut(s) | 168 |
| PctI | GAATGC | 1 cut(s) | 214 |
| PfeI | GAWTC | 1 cut(s) | 33 |
| PkrI | GCNGC | 2 cut(s) | 110, 282 |
| PspN4I | GGNNCC | 1 cut(s) | 72 |
| PsuI | RGATCY | 1 cut(s) | 70 |
| RsaI | GTAC | 1 cut(s) | 21 |
| RsaNI | GTAC | 1 cut(s) | 20 |
| SaqAI | TTAA | 1 cut(s) | 200 |
| SatI | GCNGC | 2 cut(s) | 109, 281 |
| Sau3AI | GATC | 3 cut(s) | 70, 85, 222 |
| ScrFI | CCNGG | 1 cut(s) | 414 |
| SetI | ASST | 2 cut(s) | 157, 242 |
| SfaNI | GCATC | 2 cut(s) | 309, 409 |
| SfcI | CTRYAG | 1 cut(s) | 79 |
| SsiI | CCGC | 5 cut(s) | 109, 252, 280, 380, 398 |
| SspMI | CTAG | 1 cut(s) | 66 |
| StyD4I | CCNGG | 1 cut(s) | 412 |
| StyI | CCWWGG | 1 cut(s) | 65 |
| TaqI | TCGA | 2 cut(s) | 48, 409 |
| TauI | GCSGC | 2 cut(s) | 111, 283 |
| TfiI | GAWTC | 1 cut(s) | 33 |
| Tru1I | TTAA | 1 cut(s) | 200 |
| Tru9I | TTAA | 1 cut(s) | 200 |
| TscAI | CASTG | 1 cut(s) | 254 |
| TspRI | CASTG | 1 cut(s) | 254 |
| XmaJI | CCTAGG | 1 cut(s) | 65 |
| XspI | CTAG | 1 cut(s) | 66 |