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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 113 |
| Acc36I | ACCTGC | 1 cut(s) | 463 |
| Acc65I | GGTACC | 1 cut(s) | 649 |
| AccB1I | GGYRCC | 1 cut(s) | 649 |
| AccBSI | CCGCTC | 1 cut(s) | 917 |
| AccII | CGCG | 6 cut(s) | 203, 319, 328, 630, 774, 900 |
| AccIII | TCCGGA | 1 cut(s) | 681 |
| AclWI | GGATC | 1 cut(s) | 457 |
| AcyI | GRCGYC | 1 cut(s) | 273 |
| AfaI | GTAC | 4 cut(s) | 528, 651, 744, 777 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 49, 466, 472, 659, 916 |
| AgeI | ACCGGT | 2 cut(s) | 79, 403 |
| AgsI | TTSAA | 2 cut(s) | 602, 713 |
| AjnI | CCWGG | 1 cut(s) | 652 |
| AluBI | AGCT | 6 cut(s) | 250, 489, 716, 770, 890, 896 |
| AluI | AGCT | 6 cut(s) | 250, 489, 716, 770, 890, 896 |
| Alw26I | GTCTC | 3 cut(s) | 165, 172, 288 |
| AlwI | GGATC | 1 cut(s) | 457 |
| Aor13HI | TCCGGA | 1 cut(s) | 681 |
| AoxI | GGCC | 5 cut(s) | 40, 51, 352, 456, 982 |
| ApaI | GGGCCC | 1 cut(s) | 44 |
| ApeKI | GCWGC | 3 cut(s) | 641, 725, 860 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 182, 214 |
| AsiGI | ACCGGT | 2 cut(s) | 79, 403 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 689 |
| Asp718I | GGTACC | 1 cut(s) | 649 |
| AspLEI | GCGC | 4 cut(s) | 319, 330, 399, 574 |
| AspS9I | GGNCC | 7 cut(s) | 40, 41, 51, 126, 353, 457, 679 |
| AsuC2I | CCSGG | 4 cut(s) | 9, 347, 467, 560 |
| AsuHPI | GGTGA | 3 cut(s) | 351, 379, 676 |
| AsuNHI | GCTAGC | 1 cut(s) | 766 |
| AvaII | GGWCC | 2 cut(s) | 126, 679 |
| BaeGI | GKGCMC | 2 cut(s) | 44, 801 |
| BanI | GGYRCC | 1 cut(s) | 649 |
| BanII | GRGCYC | 1 cut(s) | 44 |
| BauI | CACGAG | 1 cut(s) | 531 |
| BbsI | GAAGAC | 1 cut(s) | 276 |
| BbvI | GCAGC | 3 cut(s) | 628, 712, 872 |
| BccI | CCATC | 2 cut(s) | 116, 215 |
| BceAI | ACGGC | 2 cut(s) | 315, 416 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 430, 451, 464, 485 |
| BciT130I | CCWGG | 1 cut(s) | 654 |
| BciVI | GTATCC | 1 cut(s) | 131 |
| BcnI | CCSGG | 4 cut(s) | 9, 347, 467, 560 |
| BcoDI | GTCTC | 3 cut(s) | 165, 172, 288 |
| BfaI | CTAG | 5 cut(s) | 569, 588, 767, 857, 887 |
| BfoI | RGCGCY | 2 cut(s) | 400, 575 |
| BfuAI | ACCTGC | 1 cut(s) | 463 |
| BfuI | GTATCC | 1 cut(s) | 131 |
| BglII | AGATCT | 1 cut(s) | 789 |
| BisI | GCNGC | 9 cut(s) | 60, 237, 276, 642, 726, 861, 927, 930, 939 |
| BlsI | GCNGC | 9 cut(s) | 61, 238, 277, 643, 727, 862, 928, 931, 940 |
| Bme1390I | CCNGG | 5 cut(s) | 9, 347, 467, 560, 654 |
| Bme18I | GGWCC | 2 cut(s) | 126, 679 |
| BmgT120I | GGNCC | 7 cut(s) | 40, 41, 51, 126, 353, 457, 679 |
| BmrFI | CCNGG | 5 cut(s) | 9, 347, 467, 560, 654 |
| BmsI | GCATC | 1 cut(s) | 925 |
| BmtI | GCTAGC | 1 cut(s) | 770 |
| BpiI | GAAGAC | 1 cut(s) | 276 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 499, 531 |
| Bpu10I | CCTNAGC | 1 cut(s) | 102 |
| BpuEI | CTTGAG | 4 cut(s) | 321, 800, 845, 876 |
| BpuMI | CCSGG | 4 cut(s) | 9, 347, 467, 560 |
| BsaHI | GRCGYC | 1 cut(s) | 273 |
| BsaI | GGTCTC | 1 cut(s) | 288 |
| BsaJI | CCNNGG | 1 cut(s) | 948 |
| BsaWI | WCCGGW | 4 cut(s) | 79, 403, 681, 757 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 648, 678 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 49, 466, 472, 659, 916 |
| Bse118I | RCCGGY | 6 cut(s) | 79, 301, 313, 364, 403, 819 |
| BseAI | TCCGGA | 1 cut(s) | 681 |
| BseBI | CCWGG | 1 cut(s) | 654 |
| BseDI | CCNNGG | 1 cut(s) | 948 |
| BseGI | GGATG | 2 cut(s) | 376, 529 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 49, 466, 472, 659, 916 |
| BseRI | GAGGAG | 1 cut(s) | 282 |
| BseSI | GKGCMC | 2 cut(s) | 44, 801 |
| BseXI | GCAGC | 3 cut(s) | 628, 712, 872 |
| BsgI | GTGCAG | 1 cut(s) | 491 |
| Bsh1236I | CGCG | 6 cut(s) | 203, 319, 328, 630, 774, 900 |
| BshFI | GGCC | 5 cut(s) | 42, 53, 354, 458, 984 |
| BshNI | GGYRCC | 1 cut(s) | 649 |
| BshTI | ACCGGT | 2 cut(s) | 79, 403 |
| BslFI | GGGAC | 3 cut(s) | 139, 308, 542 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 49, 466, 472, 659, 916 |
| BsmAI | GTCTC | 3 cut(s) | 165, 172, 288 |
| BsmFI | GGGAC | 3 cut(s) | 139, 308, 542 |
| BsmI | GAATGC | 1 cut(s) | 516 |
| BsnI | GGCC | 5 cut(s) | 42, 53, 354, 458, 984 |
| Bso31I | GGTCTC | 1 cut(s) | 288 |
| Bsp120I | GGGCCC | 1 cut(s) | 40 |
| Bsp1286I | GDGCHC | 2 cut(s) | 44, 801 |
| Bsp13I | TCCGGA | 1 cut(s) | 681 |
| Bsp143I | GATC | 4 cut(s) | 85, 462, 789, 805 |
| Bsp68I | TCGCGA | 3 cut(s) | 203, 630, 900 |
| BspANI | GGCC | 5 cut(s) | 42, 53, 354, 458, 984 |
| BspEI | TCCGGA | 1 cut(s) | 681 |
| BspFNI | CGCG | 6 cut(s) | 203, 319, 328, 630, 774, 900 |
| BspMI | ACCTGC | 1 cut(s) | 463 |
| BspOI | GCTAGC | 1 cut(s) | 770 |
| BspPI | GGATC | 1 cut(s) | 457 |
| BspT107I | GGYRCC | 1 cut(s) | 649 |
| BspTNI | GGTCTC | 1 cut(s) | 288 |
| BsrBI | CCGCTC | 1 cut(s) | 917 |
| BsrFI | RCCGGY | 6 cut(s) | 79, 301, 313, 364, 403, 819 |
| BssAI | RCCGGY | 6 cut(s) | 79, 301, 313, 364, 403, 819 |
| BssECI | CCNNGG | 1 cut(s) | 948 |
| BssMI | GATC | 4 cut(s) | 85, 462, 789, 805 |
| BssNI | GRCGYC | 1 cut(s) | 273 |
| BssSI | CACGAG | 1 cut(s) | 531 |
| BssT1I | CCWWGG | 1 cut(s) | 948 |
| Bst2BI | CACGAG | 1 cut(s) | 531 |
| Bst2UI | CCWGG | 1 cut(s) | 654 |
| Bst4CI | ACNGT | 1 cut(s) | 282 |
| Bst6I | CTCTTC | 2 cut(s) | 203, 498 |
| BstACI | GRCGYC | 1 cut(s) | 273 |
| BstDEI | CTNAG | 1 cut(s) | 102 |
| BstF5I | GGATG | 2 cut(s) | 376, 529 |
| BstFNI | CGCG | 6 cut(s) | 203, 319, 328, 630, 774, 900 |
| BstH2I | RGCGCY | 2 cut(s) | 400, 575 |
| BstHHI | GCGC | 4 cut(s) | 319, 330, 399, 574 |
| BstKTI | GATC | 4 cut(s) | 88, 465, 792, 808 |
| BstMAI | GTCTC | 3 cut(s) | 165, 172, 288 |
| BstMBI | GATC | 4 cut(s) | 85, 462, 789, 805 |
| BstNI | CCWGG | 1 cut(s) | 654 |
| BstNSI | RCATGY | 2 cut(s) | 73, 391 |
| BstSCI | CCNGG | 5 cut(s) | 7, 345, 465, 558, 652 |
| BstSLI | GKGCMC | 2 cut(s) | 44, 801 |
| BstUI | CGCG | 6 cut(s) | 203, 319, 328, 630, 774, 900 |
| BstV1I | GCAGC | 3 cut(s) | 628, 712, 872 |
| BstV2I | GAAGAC | 1 cut(s) | 276 |
| BstX2I | RGATCY | 1 cut(s) | 789 |
| BstYI | RGATCY | 1 cut(s) | 789 |
| BsuI | GTATCC | 1 cut(s) | 131 |
| BsuRI | GGCC | 5 cut(s) | 42, 53, 354, 458, 984 |
| BtsCI | GGATG | 2 cut(s) | 376, 529 |
| BtuMI | TCGCGA | 3 cut(s) | 203, 630, 900 |
| BveI | ACCTGC | 1 cut(s) | 463 |
| CfoI | GCGC | 4 cut(s) | 319, 330, 399, 574 |
| Cfr10I | RCCGGY | 6 cut(s) | 79, 301, 313, 364, 403, 819 |
| Cfr13I | GGNCC | 7 cut(s) | 40, 41, 51, 126, 353, 457, 679 |
| CpoI | CGGWCCG | 1 cut(s) | 679 |
| CseI | GACGC | 1 cut(s) | 281 |
| Csp6I | GTAC | 4 cut(s) | 527, 650, 743, 776 |
| CspAI | ACCGGT | 2 cut(s) | 79, 403 |
| CspI | CGGWCCG | 1 cut(s) | 679 |
| CviAII | CATG | 4 cut(s) | 70, 388, 830, 977 |
| CviQI | GTAC | 4 cut(s) | 527, 650, 743, 776 |
| DdeI | CTNAG | 1 cut(s) | 102 |
| DpnI | GATC | 4 cut(s) | 87, 464, 791, 807 |
| DpnII | GATC | 4 cut(s) | 85, 462, 789, 805 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 113 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 113 |
| Eam1104I | CTCTTC | 2 cut(s) | 203, 498 |
| EarI | CTCTTC | 2 cut(s) | 203, 498 |
| EciI | GGCGGA | 1 cut(s) | 276 |
| Eco130I | CCWWGG | 1 cut(s) | 948 |
| Eco24I | GRGCYC | 1 cut(s) | 44 |
| Eco31I | GGTCTC | 1 cut(s) | 288 |
| Eco32I | GATATC | 1 cut(s) | 227 |
| Eco47I | GGWCC | 2 cut(s) | 126, 679 |
| EcoO109I | RGGNCCY | 2 cut(s) | 41, 353 |
| EcoRII | CCWGG | 1 cut(s) | 652 |
| EcoRV | GATATC | 1 cut(s) | 227 |
| EcoT14I | CCWWGG | 1 cut(s) | 948 |
| EcoT38I | GRGCYC | 1 cut(s) | 44 |
| ErhI | CCWWGG | 1 cut(s) | 948 |
| FaeI | CATG | 4 cut(s) | 73, 391, 833, 980 |
| FaiI | YATR | 8 cut(s) | 71, 234, 389, 449, 479, 813, 831, 978 |
| FaqI | GGGAC | 3 cut(s) | 139, 308, 542 |
| FatI | CATG | 4 cut(s) | 69, 387, 829, 976 |
| FauI | CCCGC | 3 cut(s) | 333, 436, 808 |
| Fnu4HI | GCNGC | 9 cut(s) | 60, 237, 276, 642, 726, 861, 927, 930, 939 |
| FokI | GGATG | 2 cut(s) | 363, 536 |
| FriOI | GRGCYC | 1 cut(s) | 44 |
| Fsp4HI | GCNGC | 9 cut(s) | 60, 237, 276, 642, 726, 861, 927, 930, 939 |
| FspBI | CTAG | 5 cut(s) | 569, 588, 767, 857, 887 |
| GlaI | GCGC | 4 cut(s) | 318, 329, 398, 573 |
| GluI | GCNGC | 9 cut(s) | 60, 237, 276, 642, 726, 861, 927, 930, 939 |
| HaeII | RGCGCY | 2 cut(s) | 400, 575 |
| HaeIII | GGCC | 5 cut(s) | 42, 53, 354, 458, 984 |
| HgaI | GACGC | 1 cut(s) | 281 |
| HhaI | GCGC | 4 cut(s) | 319, 330, 399, 574 |
| Hin1I | GRCGYC | 1 cut(s) | 273 |
| Hin1II | CATG | 4 cut(s) | 73, 391, 833, 980 |
| Hin6I | GCGC | 4 cut(s) | 317, 328, 397, 572 |
| HinP1I | GCGC | 4 cut(s) | 317, 328, 397, 572 |
| HinfI | GANTC | 3 cut(s) | 321, 674, 782 |
| HphI | GGTGA | 3 cut(s) | 351, 379, 676 |
| Hpy166II | GTNNAC | 1 cut(s) | 667 |
| Hpy188I | TCNGA | 3 cut(s) | 523, 868, 911 |
| Hpy8I | GTNNAC | 1 cut(s) | 667 |
| Hpy99I | CGWCG | 3 cut(s) | 674, 701, 915 |
| HpyAV | CCTTC | 7 cut(s) | 56, 128, 344, 364, 635, 653, 759 |
| HpyCH4III | ACNGT | 1 cut(s) | 282 |
| HpyCH4IV | ACGT | 1 cut(s) | 669 |
| HpyCH4V | TGCA | 6 cut(s) | 77, 451, 472, 644, 728, 980 |
| HpyF3I | CTNAG | 1 cut(s) | 102 |
| HpySE526I | ACGT | 1 cut(s) | 669 |
| Hsp92I | GRCGYC | 1 cut(s) | 273 |
| Hsp92II | CATG | 4 cut(s) | 73, 391, 833, 980 |
| HspAI | GCGC | 4 cut(s) | 317, 328, 397, 572 |
| Kpn2I | TCCGGA | 1 cut(s) | 681 |
| KpnI | GGTACC | 1 cut(s) | 653 |
| KroI | GCCGGC | 1 cut(s) | 819 |
| KroNI | GCCGGC | 1 cut(s) | 821 |
| Kzo9I | GATC | 4 cut(s) | 85, 462, 789, 805 |
| LmnI | GCTCC | 4 cut(s) | 310, 721, 847, 919 |
| Lsp1109I | GCAGC | 3 cut(s) | 628, 712, 872 |
| LweI | GCATC | 1 cut(s) | 925 |
| MaeI | CTAG | 5 cut(s) | 569, 588, 767, 857, 887 |
| MaeII | ACGT | 1 cut(s) | 669 |
| MaeIII | GTNAC | 1 cut(s) | 881 |
| MalI | GATC | 4 cut(s) | 87, 464, 791, 807 |
| MbiI | CCGCTC | 1 cut(s) | 917 |
| MboI | GATC | 4 cut(s) | 85, 462, 789, 805 |
| MboII | GAAGA | 6 cut(s) | 80, 143, 190, 281, 515, 784 |
| MfeI | CAATTG | 2 cut(s) | 169, 452 |
| MflI | RGATCY | 1 cut(s) | 789 |
| MhlI | GDGCHC | 2 cut(s) | 44, 801 |
| MluCI | AATT | 3 cut(s) | 169, 452, 582 |
| MlyI | GAGTC | 3 cut(s) | 330, 683, 791 |
| MmeI | TCCRAC | 2 cut(s) | 155, 934 |
| MroI | TCCGGA | 1 cut(s) | 681 |
| MroNI | GCCGGC | 1 cut(s) | 819 |
| MroXI | GAANNNNTTC | 1 cut(s) | 689 |
| MseI | TTAA | 2 cut(s) | 246, 971 |
| MspA1I | CMGCKG | 1 cut(s) | 803 |
| MspR9I | CCNGG | 5 cut(s) | 9, 347, 467, 560, 654 |
| MunI | CAATTG | 2 cut(s) | 169, 452 |
| Mva1269I | GAATGC | 1 cut(s) | 516 |
| MvaI | CCWGG | 1 cut(s) | 654 |
| MvnI | CGCG | 6 cut(s) | 203, 319, 328, 630, 774, 900 |
| NaeI | GCCGGC | 1 cut(s) | 821 |
| NciI | CCSGG | 4 cut(s) | 9, 347, 467, 560 |
| NdeII | GATC | 4 cut(s) | 85, 462, 789, 805 |
| NgoMIV | GCCGGC | 1 cut(s) | 819 |
| NheI | GCTAGC | 1 cut(s) | 766 |
| NlaIII | CATG | 4 cut(s) | 73, 391, 833, 980 |
| NruI | TCGCGA | 3 cut(s) | 203, 630, 900 |
| NspI | RCATGY | 2 cut(s) | 73, 391 |
| PaeI | GCATGC | 1 cut(s) | 73 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 919 |
| PctI | GAATGC | 1 cut(s) | 516 |
| PdiI | GCCGGC | 1 cut(s) | 821 |
| PdmI | GAANNNNTTC | 1 cut(s) | 689 |
| PinAI | ACCGGT | 2 cut(s) | 79, 403 |
| PkrI | GCNGC | 9 cut(s) | 61, 238, 277, 643, 727, 862, 928, 931, 940 |
| PleI | GAGTC | 3 cut(s) | 329, 682, 790 |
| PpsI | GAGTC | 3 cut(s) | 329, 682, 790 |
| Psp6I | CCWGG | 1 cut(s) | 652 |
| PspGI | CCWGG | 1 cut(s) | 652 |
| PspOMI | GGGCCC | 1 cut(s) | 40 |
| PspPI | GGNCC | 7 cut(s) | 40, 41, 51, 126, 353, 457, 679 |
| PsuI | RGATCY | 1 cut(s) | 789 |
| RruI | TCGCGA | 3 cut(s) | 203, 630, 900 |
| RsaI | GTAC | 4 cut(s) | 528, 651, 744, 777 |
| RsaNI | GTAC | 4 cut(s) | 527, 650, 743, 776 |
| Rsr2I | CGGWCCG | 1 cut(s) | 679 |
| RsrII | CGGWCCG | 1 cut(s) | 679 |
| SaqAI | TTAA | 2 cut(s) | 246, 971 |
| SatI | GCNGC | 9 cut(s) | 60, 237, 276, 642, 726, 861, 927, 930, 939 |
| Sau3AI | GATC | 4 cut(s) | 85, 462, 789, 805 |
| Sau96I | GGNCC | 7 cut(s) | 40, 41, 51, 126, 353, 457, 679 |
| SchI | GAGTC | 3 cut(s) | 330, 683, 791 |
| ScrFI | CCNGG | 5 cut(s) | 9, 347, 467, 560, 654 |
| SduI | GDGCHC | 2 cut(s) | 44, 801 |
| SfaNI | GCATC | 1 cut(s) | 925 |
| SgrAI | CRCCGGYG | 1 cut(s) | 364 |
| SinI | GGWCC | 2 cut(s) | 126, 679 |
| SmlI | CTYRAG | 4 cut(s) | 336, 779, 824, 891 |
| SmoI | CTYRAG | 4 cut(s) | 336, 779, 824, 891 |
| SphI | GCATGC | 1 cut(s) | 73 |
| Sse9I | AATT | 3 cut(s) | 169, 452, 582 |
| SspMI | CTAG | 5 cut(s) | 569, 588, 767, 857, 887 |
| StyD4I | CCNGG | 5 cut(s) | 7, 345, 465, 558, 652 |
| StyI | CCWWGG | 1 cut(s) | 948 |
| TaaI | ACNGT | 1 cut(s) | 282 |
| TaiI | ACGT | 1 cut(s) | 672 |
| TaqI | TCGA | 1 cut(s) | 672 |
| TaqII | GACCGA | 2 cut(s) | 143, 667 |
| TasI | AATT | 3 cut(s) | 169, 452, 582 |
| TauI | GCSGC | 6 cut(s) | 62, 239, 278, 929, 932, 941 |
| Tru1I | TTAA | 2 cut(s) | 246, 971 |
| Tru9I | TTAA | 2 cut(s) | 246, 971 |
| TseI | GCWGC | 3 cut(s) | 641, 725, 860 |
| VpaK11BI | GGWCC | 2 cut(s) | 126, 679 |
| XceI | RCATGY | 2 cut(s) | 73, 391 |
| XmnI | GAANNNNTTC | 1 cut(s) | 689 |
| XspI | CTAG | 5 cut(s) | 569, 588, 767, 857, 887 |