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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1089 |
| AatII | GACGTC | 1 cut(s) | 639 |
| Acc36I | ACCTGC | 5 cut(s) | 435, 727, 871, 1249, 1589 |
| AccB1I | GGYRCC | 1 cut(s) | 887 |
| AccI | GTMKAC | 1 cut(s) | 51 |
| AccIII | TCCGGA | 1 cut(s) | 631 |
| AclWI | GGATC | 5 cut(s) | 332, 861, 1229, 1350, 1358 |
| AcoI | YGGCCR | 1 cut(s) | 255 |
| AcsI | RAATTY | 1 cut(s) | 1178 |
| AcuI | CTGAAG | 5 cut(s) | 132, 315, 459, 999, 1191 |
| AcyI | GRCGYC | 1 cut(s) | 636 |
| AfaI | GTAC | 4 cut(s) | 217, 288, 906, 1029 |
| AfeI | AGCGCT | 2 cut(s) | 247, 675 |
| AgsI | TTSAA | 4 cut(s) | 92, 713, 1187, 1382 |
| AjnI | CCWGG | 6 cut(s) | 174, 401, 870, 1045, 1086, 1503 |
| Alw21I | GWGCWC | 4 cut(s) | 99, 163, 1129, 1200 |
| Alw26I | GTCTC | 3 cut(s) | 602, 739, 1500 |
| AlwI | GGATC | 5 cut(s) | 332, 861, 1229, 1350, 1358 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1504 |
| Aor13HI | TCCGGA | 1 cut(s) | 631 |
| Aor51HI | AGCGCT | 2 cut(s) | 247, 675 |
| ApaI | GGGCCC | 2 cut(s) | 34, 749 |
| ApeKI | GCWGC | 9 cut(s) | 356, 479, 953, 956, 1078, 1115, 1118, 1544, 1547 |
| ApoI | RAATTY | 1 cut(s) | 1178 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1524 |
| AsuC2I | CCSGG | 2 cut(s) | 170, 1110 |
| AsuHPI | GGTGA | 3 cut(s) | 243, 531, 675 |
| AsuNHI | GCTAGC | 1 cut(s) | 1556 |
| AvaII | GGWCC | 5 cut(s) | 57, 524, 649, 1091, 1371 |
| BaeGI | GKGCMC | 2 cut(s) | 34, 749 |
| BanI | GGYRCC | 1 cut(s) | 887 |
| BanII | GRGCYC | 7 cut(s) | 34, 163, 749, 834, 1129, 1200, 1458 |
| BbsI | GAAGAC | 1 cut(s) | 120 |
| Bbv12I | GWGCWC | 4 cut(s) | 99, 163, 1129, 1200 |
| BbvCI | CCTCAGC | 3 cut(s) | 306, 774, 801 |
| BbvI | GCAGC | 9 cut(s) | 343, 466, 940, 943, 1090, 1105, 1127, 1531, 1534 |
| BccI | CCATC | 2 cut(s) | 551, 1135 |
| BceAI | ACGGC | 3 cut(s) | 797, 1449, 1494 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 881, 915, 1565, 1599 |
| BciT130I | CCWGG | 6 cut(s) | 176, 403, 872, 1047, 1088, 1505 |
| BcnI | CCSGG | 2 cut(s) | 170, 1110 |
| BcoDI | GTCTC | 3 cut(s) | 602, 739, 1500 |
| BfaI | CTAG | 5 cut(s) | 228, 362, 1031, 1557, 1568 |
| BfmI | CTRYAG | 3 cut(s) | 48, 300, 1076 |
| BfoI | RGCGCY | 4 cut(s) | 249, 512, 677, 1484 |
| BfuAI | ACCTGC | 5 cut(s) | 435, 727, 871, 1249, 1589 |
| BlpI | GCTNAGC | 1 cut(s) | 828 |
| BmcAI | AGTACT | 1 cut(s) | 288 |
| Bme1390I | CCNGG | 8 cut(s) | 170, 176, 403, 872, 1047, 1088, 1110, 1505 |
| Bme18I | GGWCC | 5 cut(s) | 57, 524, 649, 1091, 1371 |
| BmrFI | CCNGG | 8 cut(s) | 170, 176, 403, 872, 1047, 1088, 1110, 1505 |
| BmsI | GCATC | 3 cut(s) | 34, 192, 952 |
| BmtI | GCTAGC | 1 cut(s) | 1560 |
| BpiI | GAAGAC | 1 cut(s) | 120 |
| BpmI | CTGGAG | 4 cut(s) | 189, 924, 1029, 1463 |
| Bpu10I | CCTNAGC | 3 cut(s) | 306, 774, 801 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 828 |
| BpuEI | CTTGAG | 3 cut(s) | 471, 1113, 1494 |
| BpuMI | CCSGG | 2 cut(s) | 170, 1110 |
| BsaHI | GRCGYC | 1 cut(s) | 636 |
| BsaJI | CCNNGG | 9 cut(s) | 174, 401, 402, 870, 1046, 1087, 1239, 1315, 1410 |
| BsaWI | WCCGGW | 2 cut(s) | 577, 631 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 145, 175 |
| Bse118I | RCCGGY | 2 cut(s) | 179, 253 |
| Bse1I | ACTGG | 3 cut(s) | 274, 941, 1446 |
| BseAI | TCCGGA | 1 cut(s) | 631 |
| BseBI | CCWGG | 6 cut(s) | 176, 403, 872, 1047, 1088, 1505 |
| BseDI | CCNNGG | 9 cut(s) | 174, 401, 402, 870, 1046, 1087, 1239, 1315, 1410 |
| BseGI | GGATG | 2 cut(s) | 765, 1063 |
| BseMII | CTCAG | 8 cut(s) | 297, 396, 750, 765, 792, 819, 1337, 1511 |
| BseNI | ACTGG | 3 cut(s) | 274, 941, 1446 |
| BsePI | GCGCGC | 2 cut(s) | 1514, 1540 |
| BseRI | GAGGAG | 6 cut(s) | 153, 791, 818, 978, 1032, 1466 |
| BseSI | GKGCMC | 2 cut(s) | 34, 749 |
| BseX3I | CGGCCG | 1 cut(s) | 255 |
| BseXI | GCAGC | 9 cut(s) | 343, 466, 940, 943, 1090, 1105, 1127, 1531, 1534 |
| BseYI | CCCAGC | 2 cut(s) | 461, 1395 |
| BsgI | GTGCAG | 1 cut(s) | 602 |
| Bsh1285I | CGRYCG | 4 cut(s) | 258, 657, 930, 1239 |
| BshNI | GGYRCC | 1 cut(s) | 887 |
| BsiEI | CGRYCG | 4 cut(s) | 258, 657, 930, 1239 |
| BsiHKAI | GWGCWC | 4 cut(s) | 99, 163, 1129, 1200 |
| BsiSI | CCGG | 6 cut(s) | 170, 180, 254, 578, 632, 1109 |
| BslFI | GGGAC | 4 cut(s) | 70, 537, 623, 1082 |
| BsmAI | GTCTC | 3 cut(s) | 602, 739, 1500 |
| BsmBI | CGTCTC | 1 cut(s) | 602 |
| BsmFI | GGGAC | 4 cut(s) | 70, 537, 623, 1082 |
| BsmI | GAATGC | 1 cut(s) | 625 |
| Bsp120I | GGGCCC | 2 cut(s) | 30, 745 |
| Bsp1286I | GDGCHC | 8 cut(s) | 34, 99, 163, 749, 834, 1129, 1200, 1458 |
| Bsp13I | TCCGGA | 1 cut(s) | 631 |
| Bsp143I | GATC | 9 cut(s) | 337, 585, 654, 853, 927, 1221, 1321, 1342, 1350 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 828 |
| Bsp68I | TCGCGA | 1 cut(s) | 505 |
| BspCNI | CTCAG | 8 cut(s) | 298, 395, 749, 766, 793, 820, 1338, 1510 |
| BspEI | TCCGGA | 1 cut(s) | 631 |
| BspMAI | CTGCAG | 1 cut(s) | 1080 |
| BspMI | ACCTGC | 5 cut(s) | 435, 727, 871, 1249, 1589 |
| BspOI | GCTAGC | 1 cut(s) | 1560 |
| BspPI | GGATC | 5 cut(s) | 332, 861, 1229, 1350, 1358 |
| BspQI | GCTCTTC | 1 cut(s) | 478 |
| BspT107I | GGYRCC | 1 cut(s) | 887 |
| BsrFI | RCCGGY | 2 cut(s) | 179, 253 |
| BsrI | ACTGG | 3 cut(s) | 274, 941, 1446 |
| BssAI | RCCGGY | 2 cut(s) | 179, 253 |
| BssECI | CCNNGG | 9 cut(s) | 174, 401, 402, 870, 1046, 1087, 1239, 1315, 1410 |
| BssHII | GCGCGC | 2 cut(s) | 1514, 1540 |
| BssMI | GATC | 9 cut(s) | 337, 585, 654, 853, 927, 1221, 1321, 1342, 1350 |
| BssNI | GRCGYC | 1 cut(s) | 636 |
| BssT1I | CCWWGG | 2 cut(s) | 1315, 1410 |
| Bst2UI | CCWGG | 6 cut(s) | 176, 403, 872, 1047, 1088, 1505 |
| Bst4CI | ACNGT | 3 cut(s) | 349, 1429, 1525 |
| Bst6I | CTCTTC | 2 cut(s) | 478, 609 |
| BstACI | GRCGYC | 1 cut(s) | 636 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 290 |
| BstDEI | CTNAG | 8 cut(s) | 306, 382, 736, 774, 801, 828, 1346, 1497 |
| BstDSI | CCRYGG | 1 cut(s) | 1239 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 207, 942 |
| BstF5I | GGATG | 2 cut(s) | 765, 1063 |
| BstH2I | RGCGCY | 4 cut(s) | 249, 512, 677, 1484 |
| BstKTI | GATC | 9 cut(s) | 340, 588, 657, 856, 930, 1224, 1324, 1345, 1353 |
| BstMAI | GTCTC | 3 cut(s) | 602, 739, 1500 |
| BstMBI | GATC | 9 cut(s) | 337, 585, 654, 853, 927, 1221, 1321, 1342, 1350 |
| BstMCI | CGRYCG | 4 cut(s) | 258, 657, 930, 1239 |
| BstNI | CCWGG | 6 cut(s) | 176, 403, 872, 1047, 1088, 1505 |
| BstSCI | CCNGG | 8 cut(s) | 168, 174, 401, 870, 1045, 1086, 1108, 1503 |
| BstSFI | CTRYAG | 3 cut(s) | 48, 300, 1076 |
| BstSLI | GKGCMC | 2 cut(s) | 34, 749 |
| BstV1I | GCAGC | 9 cut(s) | 343, 466, 940, 943, 1090, 1105, 1127, 1531, 1534 |
| BstV2I | GAAGAC | 1 cut(s) | 120 |
| BstX2I | RGATCY | 2 cut(s) | 1342, 1350 |
| BstYI | RGATCY | 2 cut(s) | 1342, 1350 |
| BstZI | CGGCCG | 1 cut(s) | 255 |
| BtgI | CCRYGG | 1 cut(s) | 1239 |
| BtgZI | GCGATG | 2 cut(s) | 958, 1505 |
| BtsCI | GGATG | 2 cut(s) | 765, 1063 |
| BtsIMutI | CAGTG | 1 cut(s) | 552 |
| BtuMI | TCGCGA | 1 cut(s) | 505 |
| BveI | ACCTGC | 5 cut(s) | 435, 727, 871, 1249, 1589 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1504 |
| Cfr10I | RCCGGY | 2 cut(s) | 179, 253 |
| Cfr42I | CCGCGG | 1 cut(s) | 1242 |
| CseI | GACGC | 3 cut(s) | 669, 1324, 1562 |
| Csp6I | GTAC | 4 cut(s) | 216, 287, 905, 1028 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 501, 536 |
| CviAII | CATG | 4 cut(s) | 392, 644, 847, 1595 |
| CviQI | GTAC | 4 cut(s) | 216, 287, 905, 1028 |
| DdeI | CTNAG | 8 cut(s) | 306, 382, 736, 774, 801, 828, 1346, 1497 |
| DpnI | GATC | 9 cut(s) | 339, 587, 656, 855, 929, 1223, 1323, 1344, 1352 |
| DpnII | GATC | 9 cut(s) | 337, 585, 654, 853, 927, 1221, 1321, 1342, 1350 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1089 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1089 |
| EaeI | YGGCCR | 1 cut(s) | 255 |
| EagI | CGGCCG | 1 cut(s) | 255 |
| Eam1104I | CTCTTC | 2 cut(s) | 478, 609 |
| EarI | CTCTTC | 2 cut(s) | 478, 609 |
| EciI | GGCGGA | 1 cut(s) | 866 |
| Ecl136II | GAGCTC | 3 cut(s) | 161, 1127, 1198 |
| EclXI | CGGCCG | 1 cut(s) | 255 |
| Eco130I | CCWWGG | 2 cut(s) | 1315, 1410 |
| Eco147I | AGGCCT | 1 cut(s) | 127 |
| Eco24I | GRGCYC | 7 cut(s) | 34, 163, 749, 834, 1129, 1200, 1458 |
| Eco47I | GGWCC | 5 cut(s) | 57, 524, 649, 1091, 1371 |
| Eco47III | AGCGCT | 2 cut(s) | 247, 675 |
| Eco52I | CGGCCG | 1 cut(s) | 255 |
| Eco53kI | GAGCTC | 3 cut(s) | 161, 1127, 1198 |
| Eco57I | CTGAAG | 5 cut(s) | 132, 315, 459, 999, 1191 |
| EcoICRI | GAGCTC | 3 cut(s) | 161, 1127, 1198 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 207, 942 |
| EcoO109I | RGGNCCY | 7 cut(s) | 524, 649, 745, 746, 922, 947, 1091 |
| EcoRII | CCWGG | 6 cut(s) | 174, 401, 870, 1045, 1086, 1503 |
| EcoT14I | CCWWGG | 2 cut(s) | 1315, 1410 |
| EcoT38I | GRGCYC | 7 cut(s) | 34, 163, 749, 834, 1129, 1200, 1458 |
| ErhI | CCWWGG | 2 cut(s) | 1315, 1410 |
| Esp3I | CGTCTC | 1 cut(s) | 602 |
| FaeI | CATG | 4 cut(s) | 395, 647, 850, 1598 |
| FaqI | GGGAC | 4 cut(s) | 70, 537, 623, 1082 |
| FatI | CATG | 4 cut(s) | 391, 643, 846, 1594 |
| FauI | CCCGC | 4 cut(s) | 88, 374, 553, 841 |
| FauNDI | CATATG | 1 cut(s) | 1192 |
| FblI | GTMKAC | 1 cut(s) | 51 |
| FokI | GGATG | 2 cut(s) | 752, 1070 |
| FriOI | GRGCYC | 7 cut(s) | 34, 163, 749, 834, 1129, 1200, 1458 |
| FspBI | CTAG | 5 cut(s) | 228, 362, 1031, 1557, 1568 |
| GsaI | CCCAGC | 2 cut(s) | 465, 1399 |
| GsuI | CTGGAG | 4 cut(s) | 189, 924, 1029, 1463 |
| HaeII | RGCGCY | 4 cut(s) | 249, 512, 677, 1484 |
| HapII | CCGG | 6 cut(s) | 170, 180, 254, 578, 632, 1109 |
| HgaI | GACGC | 3 cut(s) | 669, 1324, 1562 |
| Hin1I | GRCGYC | 1 cut(s) | 636 |
| Hin1II | CATG | 4 cut(s) | 395, 647, 850, 1598 |
| HincII | GTYRAC | 1 cut(s) | 16 |
| HindII | GTYRAC | 1 cut(s) | 16 |
| HindIII | AAGCTT | 1 cut(s) | 1607 |
| HinfI | GANTC | 3 cut(s) | 311, 1083, 1330 |
| HpaII | CCGG | 6 cut(s) | 170, 180, 254, 578, 632, 1109 |
| HphI | GGTGA | 3 cut(s) | 243, 531, 675 |
| Hpy166II | GTNNAC | 3 cut(s) | 16, 52, 197 |
| Hpy188I | TCNGA | 9 cut(s) | 112, 149, 328, 385, 604, 739, 1347, 1371, 1500 |
| Hpy8I | GTNNAC | 3 cut(s) | 16, 52, 197 |
| Hpy99I | CGWCG | 4 cut(s) | 338, 444, 935, 1556 |
| HpyCH4III | ACNGT | 3 cut(s) | 349, 1429, 1525 |
| HpyCH4IV | ACGT | 1 cut(s) | 636 |
| HpyCH4V | TGCA | 7 cut(s) | 583, 728, 902, 1078, 1204, 1286, 1598 |
| HpyF3I | CTNAG | 8 cut(s) | 306, 382, 736, 774, 801, 828, 1346, 1497 |
| HpySE526I | ACGT | 1 cut(s) | 636 |
| Hsp92I | GRCGYC | 1 cut(s) | 636 |
| Hsp92II | CATG | 4 cut(s) | 395, 647, 850, 1598 |
| Kpn2I | TCCGGA | 1 cut(s) | 631 |
| KroI | GCCGGC | 1 cut(s) | 179 |
| KroNI | GCCGGC | 1 cut(s) | 181 |
| KspI | CCGCGG | 1 cut(s) | 1242 |
| Kzo9I | GATC | 9 cut(s) | 337, 585, 654, 853, 927, 1221, 1321, 1342, 1350 |
| LguI | GCTCTTC | 1 cut(s) | 478 |
| LmnI | GCTCC | 5 cut(s) | 166, 628, 1045, 1444, 1453 |
| Lsp1109I | GCAGC | 9 cut(s) | 343, 466, 940, 943, 1090, 1105, 1127, 1531, 1534 |
| LweI | GCATC | 3 cut(s) | 34, 192, 952 |
| MaeI | CTAG | 5 cut(s) | 228, 362, 1031, 1557, 1568 |
| MaeII | ACGT | 1 cut(s) | 636 |
| MaeIII | GTNAC | 4 cut(s) | 681, 761, 1423, 1429 |
| MalI | GATC | 9 cut(s) | 339, 587, 656, 855, 929, 1223, 1323, 1344, 1352 |
| MboI | GATC | 9 cut(s) | 337, 585, 654, 853, 927, 1221, 1321, 1342, 1350 |
| MboII | GAAGA | 7 cut(s) | 74, 125, 312, 315, 465, 626, 1184 |
| MflI | RGATCY | 2 cut(s) | 1342, 1350 |
| MhlI | GDGCHC | 8 cut(s) | 34, 99, 163, 749, 834, 1129, 1200, 1458 |
| MluCI | AATT | 3 cut(s) | 189, 1178, 1418 |
| MlyI | GAGTC | 1 cut(s) | 1077 |
| MroI | TCCGGA | 1 cut(s) | 631 |
| MroNI | GCCGGC | 1 cut(s) | 179 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1524 |
| MseI | TTAA | 1 cut(s) | 1475 |
| MspA1I | CMGCKG | 8 cut(s) | 83, 260, 305, 433, 479, 836, 1118, 1241 |
| MspI | CCGG | 6 cut(s) | 170, 180, 254, 578, 632, 1109 |
| MspR9I | CCNGG | 8 cut(s) | 170, 176, 403, 872, 1047, 1088, 1110, 1505 |
| Mva1269I | GAATGC | 1 cut(s) | 625 |
| MvaI | CCWGG | 6 cut(s) | 176, 403, 872, 1047, 1088, 1505 |
| NaeI | GCCGGC | 1 cut(s) | 181 |
| NciI | CCSGG | 2 cut(s) | 170, 1110 |
| NdeI | CATATG | 1 cut(s) | 1192 |
| NdeII | GATC | 9 cut(s) | 337, 585, 654, 853, 927, 1221, 1321, 1342, 1350 |
| NgoMIV | GCCGGC | 1 cut(s) | 179 |
| NheI | GCTAGC | 1 cut(s) | 1556 |
| NlaIII | CATG | 4 cut(s) | 395, 647, 850, 1598 |
| NmeAIII | GCCGAG | 1 cut(s) | 545 |
| NmuCI | GTSAC | 4 cut(s) | 681, 761, 1423, 1429 |
| NruI | TCGCGA | 1 cut(s) | 505 |
| PasI | CCCWGGG | 1 cut(s) | 402 |
| PauI | GCGCGC | 2 cut(s) | 1514, 1540 |
| PceI | AGGCCT | 1 cut(s) | 127 |
| PciSI | GCTCTTC | 1 cut(s) | 478 |
| PctI | GAATGC | 1 cut(s) | 625 |
| PdiI | GCCGGC | 1 cut(s) | 181 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1524 |
| PfeI | GAWTC | 2 cut(s) | 311, 1330 |
| Ple19I | CGATCG | 2 cut(s) | 657, 930 |
| PleI | GAGTC | 1 cut(s) | 1077 |
| PpsI | GAGTC | 1 cut(s) | 1077 |
| PpuMI | RGGWCCY | 3 cut(s) | 524, 649, 1091 |
| Psp124BI | GAGCTC | 3 cut(s) | 163, 1129, 1200 |
| Psp5II | RGGWCCY | 3 cut(s) | 524, 649, 1091 |
| Psp6I | CCWGG | 6 cut(s) | 174, 401, 870, 1045, 1086, 1503 |
| PspFI | CCCAGC | 2 cut(s) | 461, 1395 |
| PspGI | CCWGG | 6 cut(s) | 174, 401, 870, 1045, 1086, 1503 |
| PspOMI | GGGCCC | 2 cut(s) | 30, 745 |
| PspPPI | RGGWCCY | 3 cut(s) | 524, 649, 1091 |
| PstI | CTGCAG | 1 cut(s) | 1080 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1504 |
| PsuI | RGATCY | 2 cut(s) | 1342, 1350 |
| PteI | GCGCGC | 2 cut(s) | 1514, 1540 |
| PvuI | CGATCG | 2 cut(s) | 657, 930 |
| PvuII | CAGCTG | 4 cut(s) | 305, 433, 479, 1118 |
| RruI | TCGCGA | 1 cut(s) | 505 |
| RsaI | GTAC | 4 cut(s) | 217, 288, 906, 1029 |
| RsaNI | GTAC | 4 cut(s) | 216, 287, 905, 1028 |
| SacI | GAGCTC | 3 cut(s) | 163, 1129, 1200 |
| SacII | CCGCGG | 1 cut(s) | 1242 |
| SapI | GCTCTTC | 1 cut(s) | 478 |
| SaqAI | TTAA | 1 cut(s) | 1475 |
| Sau3AI | GATC | 9 cut(s) | 337, 585, 654, 853, 927, 1221, 1321, 1342, 1350 |
| ScaI | AGTACT | 1 cut(s) | 288 |
| SchI | GAGTC | 1 cut(s) | 1077 |
| ScrFI | CCNGG | 8 cut(s) | 170, 176, 403, 872, 1047, 1088, 1110, 1505 |
| SduI | GDGCHC | 8 cut(s) | 34, 99, 163, 749, 834, 1129, 1200, 1458 |
| SfaNI | GCATC | 3 cut(s) | 34, 192, 952 |
| SfcI | CTRYAG | 3 cut(s) | 48, 300, 1076 |
| Sfr303I | CCGCGG | 1 cut(s) | 1242 |
| SgrBI | CCGCGG | 1 cut(s) | 1242 |
| SinI | GGWCC | 5 cut(s) | 57, 524, 649, 1091, 1371 |
| SmlI | CTYRAG | 3 cut(s) | 486, 1128, 1509 |
| SmoI | CTYRAG | 3 cut(s) | 486, 1128, 1509 |
| Sse9I | AATT | 3 cut(s) | 189, 1178, 1418 |
| SseBI | AGGCCT | 1 cut(s) | 127 |
| SspMI | CTAG | 5 cut(s) | 228, 362, 1031, 1557, 1568 |
| SstI | GAGCTC | 3 cut(s) | 163, 1129, 1200 |
| StuI | AGGCCT | 1 cut(s) | 127 |
| StyD4I | CCNGG | 8 cut(s) | 168, 174, 401, 870, 1045, 1086, 1108, 1503 |
| StyI | CCWWGG | 2 cut(s) | 1315, 1410 |
| TaaI | ACNGT | 3 cut(s) | 349, 1429, 1525 |
| TaiI | ACGT | 1 cut(s) | 639 |
| TaqI | TCGA | 5 cut(s) | 130, 933, 1404, 1528, 1603 |
| TaqII | GACCGA | 1 cut(s) | 74 |
| TasI | AATT | 3 cut(s) | 189, 1178, 1418 |
| TatI | WGTACW | 1 cut(s) | 286 |
| TauI | GCSGC | 7 cut(s) | 223, 234, 237, 260, 1155, 1244, 1281 |
| TfiI | GAWTC | 2 cut(s) | 311, 1330 |
| Tru1I | TTAA | 1 cut(s) | 1475 |
| Tru9I | TTAA | 1 cut(s) | 1475 |
| TscAI | CASTG | 1 cut(s) | 559 |
| TseFI | GTSAC | 4 cut(s) | 681, 761, 1423, 1429 |
| TseI | GCWGC | 9 cut(s) | 356, 479, 953, 956, 1078, 1115, 1118, 1544, 1547 |
| Tsp45I | GTSAC | 4 cut(s) | 681, 761, 1423, 1429 |
| TspDTI | ATGAA | 5 cut(s) | 429, 855, 1074, 1191, 1242 |
| TspGWI | ACGGA | 1 cut(s) | 626 |
| TspRI | CASTG | 1 cut(s) | 559 |
| VpaK11BI | GGWCC | 5 cut(s) | 57, 524, 649, 1091, 1371 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 207, 942 |
| XapI | RAATTY | 1 cut(s) | 1178 |
| XbaI | TCTAGA | 1 cut(s) | 1567 |
| XmiI | GTMKAC | 1 cut(s) | 51 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1524 |
| XspI | CTAG | 5 cut(s) | 228, 362, 1031, 1557, 1568 |
| ZraI | GACGTC | 1 cut(s) | 637 |
| ZrmI | AGTACT | 1 cut(s) | 288 |