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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 30 |
| AccB1I | GGYRCC | 1 cut(s) | 305 |
| AccII | CGCG | 6 cut(s) | 54, 103, 340, 342, 366, 368 |
| AccIII | TCCGGA | 1 cut(s) | 390 |
| AclWI | GGATC | 2 cut(s) | 182, 369 |
| AcoI | YGGCCR | 1 cut(s) | 58 |
| AcyI | GRCGYC | 1 cut(s) | 306 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 247, 302 |
| AflII | CTTAAG | 1 cut(s) | 169 |
| AgsI | TTSAA | 1 cut(s) | 206 |
| AhlI | ACTAGT | 1 cut(s) | 223 |
| AluBI | AGCT | 3 cut(s) | 66, 93, 383 |
| AluI | AGCT | 3 cut(s) | 66, 93, 383 |
| Alw21I | GWGCWC | 2 cut(s) | 95, 401 |
| Alw26I | GTCTC | 1 cut(s) | 325 |
| AlwI | GGATC | 2 cut(s) | 182, 369 |
| Ama87I | CYCGRG | 1 cut(s) | 28 |
| Aor13HI | TCCGGA | 1 cut(s) | 390 |
| AoxI | GGCC | 5 cut(s) | 58, 104, 159, 237, 258 |
| ApeKI | GCWGC | 1 cut(s) | 63 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 348 |
| AspLEI | GCGC | 6 cut(s) | 253, 308, 340, 342, 368, 370 |
| AspS9I | GGNCC | 5 cut(s) | 32, 159, 195, 238, 259 |
| AsuC2I | CCSGG | 2 cut(s) | 29, 30 |
| AsuNHI | GCTAGC | 1 cut(s) | 379 |
| AvaI | CYCGRG | 1 cut(s) | 28 |
| AvaII | GGWCC | 2 cut(s) | 32, 195 |
| BanI | GGYRCC | 1 cut(s) | 305 |
| BanII | GRGCYC | 1 cut(s) | 95 |
| Bbv12I | GWGCWC | 2 cut(s) | 95, 401 |
| BbvI | GCAGC | 1 cut(s) | 75 |
| BceAI | ACGGC | 2 cut(s) | 129, 273 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 388 |
| BcnI | CCSGG | 2 cut(s) | 29, 30 |
| BcoDI | GTCTC | 1 cut(s) | 325 |
| BcuI | ACTAGT | 1 cut(s) | 223 |
| BfaI | CTAG | 2 cut(s) | 224, 380 |
| BfoI | RGCGCY | 2 cut(s) | 254, 309 |
| BfrI | CTTAAG | 1 cut(s) | 169 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 57 |
| BisI | GCNGC | 7 cut(s) | 20, 52, 61, 64, 104, 249, 371 |
| BlsI | GCNGC | 7 cut(s) | 21, 53, 62, 65, 105, 250, 372 |
| Bme1390I | CCNGG | 2 cut(s) | 29, 30 |
| Bme18I | GGWCC | 2 cut(s) | 32, 195 |
| BmeT110I | CYCGRG | 1 cut(s) | 28 |
| BmgT120I | GGNCC | 5 cut(s) | 32, 159, 195, 238, 259 |
| BmiI | GGNNCC | 5 cut(s) | 33, 34, 185, 197, 307 |
| BmrFI | CCNGG | 2 cut(s) | 29, 30 |
| BmsI | GCATC | 1 cut(s) | 70 |
| BmtI | GCTAGC | 1 cut(s) | 383 |
| BpuEI | CTTGAG | 2 cut(s) | 52, 318 |
| BpuMI | CCSGG | 2 cut(s) | 29, 30 |
| BsaHI | GRCGYC | 1 cut(s) | 306 |
| BsaJI | CCNNGG | 4 cut(s) | 28, 52, 162, 234 |
| BsaWI | WCCGGW | 1 cut(s) | 390 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 247, 302 |
| BseAI | TCCGGA | 1 cut(s) | 390 |
| BseDI | CCNNGG | 4 cut(s) | 28, 52, 162, 234 |
| BseGI | GGATG | 1 cut(s) | 399 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 247, 302 |
| BsePI | GCGCGC | 2 cut(s) | 338, 366 |
| BseXI | GCAGC | 1 cut(s) | 75 |
| Bsh1236I | CGCG | 6 cut(s) | 54, 103, 340, 342, 366, 368 |
| Bsh1285I | CGRYCG | 1 cut(s) | 148 |
| BshFI | GGCC | 5 cut(s) | 60, 106, 161, 239, 260 |
| BshNI | GGYRCC | 1 cut(s) | 305 |
| BsiEI | CGRYCG | 1 cut(s) | 148 |
| BsiHKAI | GWGCWC | 2 cut(s) | 95, 401 |
| BsiHKCI | CYCGRG | 1 cut(s) | 28 |
| BsiSI | CCGG | 3 cut(s) | 29, 309, 391 |
| BslFI | GGGAC | 2 cut(s) | 18, 25 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 247, 302 |
| BsmAI | GTCTC | 1 cut(s) | 325 |
| BsmFI | GGGAC | 2 cut(s) | 18, 25 |
| BsnI | GGCC | 5 cut(s) | 60, 106, 161, 239, 260 |
| BsoBI | CYCGRG | 1 cut(s) | 28 |
| Bsp1286I | GDGCHC | 2 cut(s) | 95, 401 |
| Bsp13I | TCCGGA | 1 cut(s) | 390 |
| Bsp143I | GATC | 3 cut(s) | 145, 174, 361 |
| BspANI | GGCC | 5 cut(s) | 60, 106, 161, 239, 260 |
| BspEI | TCCGGA | 1 cut(s) | 390 |
| BspFNI | CGCG | 6 cut(s) | 54, 103, 340, 342, 366, 368 |
| BspLI | GGNNCC | 5 cut(s) | 33, 34, 185, 197, 307 |
| BspOI | GCTAGC | 1 cut(s) | 383 |
| BspPI | GGATC | 2 cut(s) | 182, 369 |
| BspT107I | GGYRCC | 1 cut(s) | 305 |
| BspTI | CTTAAG | 1 cut(s) | 169 |
| BssECI | CCNNGG | 4 cut(s) | 28, 52, 162, 234 |
| BssHII | GCGCGC | 2 cut(s) | 338, 366 |
| BssMI | GATC | 3 cut(s) | 145, 174, 361 |
| BssNI | GRCGYC | 1 cut(s) | 306 |
| BssT1I | CCWWGG | 1 cut(s) | 234 |
| BstACI | GRCGYC | 1 cut(s) | 306 |
| BstAFI | CTTAAG | 1 cut(s) | 169 |
| BstC8I | GCNNGC | 4 cut(s) | 118, 340, 368, 381 |
| BstDEI | CTNAG | 1 cut(s) | 140 |
| BstDSI | CCRYGG | 1 cut(s) | 52 |
| BstF5I | GGATG | 1 cut(s) | 399 |
| BstFNI | CGCG | 6 cut(s) | 54, 103, 340, 342, 366, 368 |
| BstH2I | RGCGCY | 2 cut(s) | 254, 309 |
| BstHHI | GCGC | 6 cut(s) | 253, 308, 340, 342, 368, 370 |
| BstKTI | GATC | 3 cut(s) | 148, 177, 364 |
| BstMAI | GTCTC | 1 cut(s) | 325 |
| BstMBI | GATC | 3 cut(s) | 145, 174, 361 |
| BstMCI | CGRYCG | 1 cut(s) | 148 |
| BstSCI | CCNGG | 2 cut(s) | 27, 28 |
| BstUI | CGCG | 6 cut(s) | 54, 103, 340, 342, 366, 368 |
| BstV1I | GCAGC | 1 cut(s) | 75 |
| BsuRI | GGCC | 5 cut(s) | 60, 106, 161, 239, 260 |
| BtgI | CCRYGG | 1 cut(s) | 52 |
| BtgZI | GCGATG | 1 cut(s) | 330 |
| BtsCI | GGATG | 1 cut(s) | 399 |
| Cac8I | GCNNGC | 4 cut(s) | 118, 340, 368, 381 |
| CfoI | GCGC | 6 cut(s) | 253, 308, 340, 342, 368, 370 |
| Cfr13I | GGNCC | 5 cut(s) | 32, 159, 195, 238, 259 |
| Cfr42I | CCGCGG | 1 cut(s) | 55 |
| Cfr9I | CCCGGG | 1 cut(s) | 28 |
| CseI | GACGC | 2 cut(s) | 277, 385 |
| DdeI | CTNAG | 1 cut(s) | 140 |
| DinI | GGCGCC | 1 cut(s) | 307 |
| DpnI | GATC | 3 cut(s) | 147, 176, 363 |
| DpnII | GATC | 3 cut(s) | 145, 174, 361 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 30 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 30 |
| EaeI | YGGCCR | 1 cut(s) | 58 |
| Ecl136II | GAGCTC | 1 cut(s) | 93 |
| Eco130I | CCWWGG | 1 cut(s) | 234 |
| Eco24I | GRGCYC | 1 cut(s) | 95 |
| Eco47I | GGWCC | 2 cut(s) | 32, 195 |
| Eco53kI | GAGCTC | 1 cut(s) | 93 |
| Eco88I | CYCGRG | 1 cut(s) | 28 |
| EcoICRI | GAGCTC | 1 cut(s) | 93 |
| EcoO109I | RGGNCCY | 1 cut(s) | 32 |
| EcoT14I | CCWWGG | 1 cut(s) | 234 |
| EcoT38I | GRGCYC | 1 cut(s) | 95 |
| EgeI | GGCGCC | 1 cut(s) | 307 |
| EheI | GGCGCC | 1 cut(s) | 307 |
| ErhI | CCWWGG | 1 cut(s) | 234 |
| FaiI | YATR | 2 cut(s) | 285, 287 |
| FaqI | GGGAC | 2 cut(s) | 18, 25 |
| Fnu4HI | GCNGC | 7 cut(s) | 20, 52, 61, 64, 104, 249, 371 |
| FokI | GGATG | 1 cut(s) | 406 |
| FriOI | GRGCYC | 1 cut(s) | 95 |
| Fsp4HI | GCNGC | 7 cut(s) | 20, 52, 61, 64, 104, 249, 371 |
| FspBI | CTAG | 2 cut(s) | 224, 380 |
| GlaI | GCGC | 6 cut(s) | 252, 307, 339, 341, 367, 369 |
| GluI | GCNGC | 7 cut(s) | 20, 52, 61, 64, 104, 249, 371 |
| HaeII | RGCGCY | 2 cut(s) | 254, 309 |
| HaeIII | GGCC | 5 cut(s) | 60, 106, 161, 239, 260 |
| HapII | CCGG | 3 cut(s) | 29, 309, 391 |
| HgaI | GACGC | 2 cut(s) | 277, 385 |
| HhaI | GCGC | 6 cut(s) | 253, 308, 340, 342, 368, 370 |
| Hin1I | GRCGYC | 1 cut(s) | 306 |
| Hin6I | GCGC | 6 cut(s) | 251, 306, 338, 340, 366, 368 |
| HinP1I | GCGC | 6 cut(s) | 251, 306, 338, 340, 366, 368 |
| HinfI | GANTC | 2 cut(s) | 24, 154 |
| HpaII | CCGG | 3 cut(s) | 29, 309, 391 |
| Hpy188I | TCNGA | 3 cut(s) | 79, 183, 195 |
| Hpy188III | TCNNGA | 5 cut(s) | 35, 69, 206, 322, 391 |
| Hpy99I | CGWCG | 2 cut(s) | 271, 379 |
| HpyAV | CCTTC | 1 cut(s) | 200 |
| HpyCH4V | TGCA | 1 cut(s) | 111 |
| HpyF3I | CTNAG | 1 cut(s) | 140 |
| Hsp92I | GRCGYC | 1 cut(s) | 306 |
| HspAI | GCGC | 6 cut(s) | 251, 306, 338, 340, 366, 368 |
| KasI | GGCGCC | 1 cut(s) | 305 |
| KflI | GGGWCCC | 1 cut(s) | 32 |
| Kpn2I | TCCGGA | 1 cut(s) | 390 |
| KspI | CCGCGG | 1 cut(s) | 55 |
| Kzo9I | GATC | 3 cut(s) | 145, 174, 361 |
| LpnPI | CCDG | 3 cut(s) | 42, 322, 404 |
| Lsp1109I | GCAGC | 1 cut(s) | 75 |
| LweI | GCATC | 1 cut(s) | 70 |
| MaeI | CTAG | 2 cut(s) | 224, 380 |
| MalI | GATC | 3 cut(s) | 147, 176, 363 |
| MboI | GATC | 3 cut(s) | 145, 174, 361 |
| MboII | GAAGA | 1 cut(s) | 287 |
| MhlI | GDGCHC | 2 cut(s) | 95, 401 |
| MluCI | AATT | 1 cut(s) | 242 |
| Mly113I | GGCGCC | 1 cut(s) | 306 |
| MlyI | GAGTC | 1 cut(s) | 18 |
| MnlI | CCTC | 4 cut(s) | 115, 157, 221, 291 |
| MroI | TCCGGA | 1 cut(s) | 390 |
| MroXI | GAANNNNTTC | 1 cut(s) | 348 |
| MseI | TTAA | 2 cut(s) | 170, 300 |
| MspA1I | CMGCKG | 1 cut(s) | 54 |
| MspCI | CTTAAG | 1 cut(s) | 169 |
| MspI | CCGG | 3 cut(s) | 29, 309, 391 |
| MspR9I | CCNGG | 2 cut(s) | 29, 30 |
| MvnI | CGCG | 6 cut(s) | 54, 103, 340, 342, 366, 368 |
| NarI | GGCGCC | 1 cut(s) | 306 |
| NciI | CCSGG | 2 cut(s) | 29, 30 |
| NdeII | GATC | 3 cut(s) | 145, 174, 361 |
| NheI | GCTAGC | 1 cut(s) | 379 |
| NlaIV | GGNNCC | 5 cut(s) | 33, 34, 185, 197, 307 |
| NmeAIII | GCCGAG | 1 cut(s) | 187 |
| PauI | GCGCGC | 2 cut(s) | 338, 366 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 263 |
| PdmI | GAANNNNTTC | 1 cut(s) | 348 |
| PfeI | GAWTC | 1 cut(s) | 154 |
| PkrI | GCNGC | 7 cut(s) | 21, 53, 62, 65, 105, 250, 372 |
| Ple19I | CGATCG | 1 cut(s) | 148 |
| PleI | GAGTC | 1 cut(s) | 18 |
| PluTI | GGCGCC | 1 cut(s) | 309 |
| PpsI | GAGTC | 1 cut(s) | 18 |
| PpuMI | RGGWCCY | 1 cut(s) | 32 |
| Psp124BI | GAGCTC | 1 cut(s) | 95 |
| Psp5II | RGGWCCY | 1 cut(s) | 32 |
| PspN4I | GGNNCC | 5 cut(s) | 33, 34, 185, 197, 307 |
| PspPI | GGNCC | 5 cut(s) | 32, 159, 195, 238, 259 |
| PspPPI | RGGWCCY | 1 cut(s) | 32 |
| PteI | GCGCGC | 2 cut(s) | 338, 366 |
| PvuI | CGATCG | 1 cut(s) | 148 |
| SacI | GAGCTC | 1 cut(s) | 95 |
| SacII | CCGCGG | 1 cut(s) | 55 |
| SaqAI | TTAA | 2 cut(s) | 170, 300 |
| SatI | GCNGC | 7 cut(s) | 20, 52, 61, 64, 104, 249, 371 |
| Sau3AI | GATC | 3 cut(s) | 145, 174, 361 |
| Sau96I | GGNCC | 5 cut(s) | 32, 159, 195, 238, 259 |
| SchI | GAGTC | 1 cut(s) | 18 |
| ScrFI | CCNGG | 2 cut(s) | 29, 30 |
| SduI | GDGCHC | 2 cut(s) | 95, 401 |
| SetI | ASST | 7 cut(s) | 68, 95, 126, 192, 213, 283, 385 |
| SfaNI | GCATC | 1 cut(s) | 70 |
| SfoI | GGCGCC | 1 cut(s) | 307 |
| Sfr303I | CCGCGG | 1 cut(s) | 55 |
| SgrBI | CCGCGG | 1 cut(s) | 55 |
| SinI | GGWCC | 2 cut(s) | 32, 195 |
| SmaI | CCCGGG | 1 cut(s) | 30 |
| SmlI | CTYRAG | 3 cut(s) | 67, 169, 333 |
| SmoI | CTYRAG | 3 cut(s) | 67, 169, 333 |
| SpeI | ACTAGT | 1 cut(s) | 223 |
| Sse9I | AATT | 1 cut(s) | 242 |
| SspDI | GGCGCC | 1 cut(s) | 305 |
| SspMI | CTAG | 2 cut(s) | 224, 380 |
| SstI | GAGCTC | 1 cut(s) | 95 |
| StyD4I | CCNGG | 2 cut(s) | 27, 28 |
| StyI | CCWWGG | 1 cut(s) | 234 |
| TaqI | TCGA | 5 cut(s) | 89, 148, 228, 323, 352 |
| TasI | AATT | 1 cut(s) | 242 |
| TauI | GCSGC | 6 cut(s) | 22, 54, 63, 106, 251, 373 |
| TfiI | GAWTC | 1 cut(s) | 154 |
| Tru1I | TTAA | 2 cut(s) | 170, 300 |
| Tru9I | TTAA | 2 cut(s) | 170, 300 |
| TseI | GCWGC | 1 cut(s) | 63 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 376 |
| TspMI | CCCGGG | 1 cut(s) | 28 |
| Vha464I | CTTAAG | 1 cut(s) | 169 |
| VpaK11BI | GGWCC | 2 cut(s) | 32, 195 |
| XmaI | CCCGGG | 1 cut(s) | 28 |
| XmnI | GAANNNNTTC | 1 cut(s) | 348 |
| XspI | CTAG | 2 cut(s) | 224, 380 |