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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 375 |
| AarI | CACCTGC | 4 cut(s) | 1117, 1405, 1655, 1973 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2187 |
| AatII | GACGTC | 3 cut(s) | 1233, 1521, 1839 |
| AccB1I | GGYRCC | 2 cut(s) | 343, 2210 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 407 |
| AccI | GTMKAC | 2 cut(s) | 444, 480 |
| AccIII | TCCGGA | 3 cut(s) | 80, 264, 1096 |
| AcsI | RAATTY | 1 cut(s) | 2276 |
| AcuI | CTGAAG | 2 cut(s) | 924, 2289 |
| AcyI | GRCGYC | 5 cut(s) | 633, 1101, 1230, 1518, 1836 |
| AfaI | GTAC | 6 cut(s) | 1686, 1809, 2004, 2127, 2244, 2260 |
| AfeI | AGCGCT | 2 cut(s) | 2427, 2622 |
| AgsI | TTSAA | 5 cut(s) | 1178, 1466, 2285, 2480, 2675 |
| Alw21I | GWGCWC | 8 cut(s) | 113, 297, 582, 615, 1143, 1431, 2227, 2298 |
| Alw26I | GTCTC | 3 cut(s) | 526, 1204, 1492 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1670, 1988 |
| Aor13HI | TCCGGA | 3 cut(s) | 80, 264, 1096 |
| Aor51HI | AGCGCT | 2 cut(s) | 2427, 2622 |
| ApaI | GGGCCC | 2 cut(s) | 463, 1214 |
| ApoI | RAATTY | 1 cut(s) | 2276 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 382, 414, 542, 574 |
| AseI | ATTAAT | 1 cut(s) | 2322 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 999 |
| AspA2I | CCTAGG | 2 cut(s) | 2413, 2608 |
| AsuC2I | CCSGG | 2 cut(s) | 686, 2208 |
| AsuHPI | GGTGA | 6 cut(s) | 1140, 1304, 1428, 1592, 2429, 2624 |
| AsuNHI | GCTAGC | 2 cut(s) | 673, 2744 |
| AvrII | CCTAGG | 2 cut(s) | 2413, 2608 |
| BaeGI | GKGCMC | 3 cut(s) | 463, 1214, 2213 |
| BamHI | GGATCC | 2 cut(s) | 1114, 1402 |
| BanI | GGYRCC | 2 cut(s) | 343, 2210 |
| BanII | GRGCYC | 7 cut(s) | 113, 297, 463, 582, 1214, 2227, 2298 |
| BbsI | GAAGAC | 1 cut(s) | 2706 |
| Bbv12I | GWGCWC | 8 cut(s) | 113, 297, 582, 615, 1143, 1431, 2227, 2298 |
| BbvCI | CCTCAGC | 4 cut(s) | 1239, 1527, 1845, 1872 |
| BccI | CCATC | 3 cut(s) | 70, 254, 1016 |
| BceAI | ACGGC | 5 cut(s) | 1235, 1523, 1841, 2547, 2736 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2753, 2787 |
| BcnI | CCSGG | 2 cut(s) | 686, 2208 |
| BcoDI | GTCTC | 3 cut(s) | 526, 1204, 1492 |
| BfaI | CTAG | 8 cut(s) | 674, 1811, 2039, 2129, 2414, 2609, 2745, 2756 |
| BfmI | CTRYAG | 5 cut(s) | 477, 738, 825, 1911, 2174 |
| BfoI | RGCGCY | 3 cut(s) | 977, 2429, 2624 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 143, 2540 |
| BglII | AGATCT | 2 cut(s) | 96, 2635 |
| BlnI | CCTAGG | 2 cut(s) | 2413, 2608 |
| BlpI | GCTNAGC | 4 cut(s) | 1030, 1320, 1608, 1926 |
| BmrI | ACTGGG | 1 cut(s) | 1357 |
| BmsI | GCATC | 8 cut(s) | 352, 463, 708, 1732, 2050, 2408, 2603, 2731 |
| BmtI | GCTAGC | 2 cut(s) | 677, 2748 |
| BmuI | ACTGGG | 1 cut(s) | 1357 |
| BpiI | GAAGAC | 1 cut(s) | 2706 |
| BpmI | CTGGAG | 6 cut(s) | 936, 1704, 1779, 1809, 2097, 2127 |
| Bpu10I | CCTNAGC | 5 cut(s) | 581, 1239, 1527, 1845, 1872 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 1030, 1320, 1608, 1926 |
| BpuEI | CTTGAG | 2 cut(s) | 705, 2211 |
| BpuMI | CCSGG | 2 cut(s) | 686, 2208 |
| BsaHI | GRCGYC | 5 cut(s) | 633, 1101, 1230, 1518, 1836 |
| BsaWI | WCCGGW | 3 cut(s) | 80, 264, 1096 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 661, 691 |
| Bse1I | ACTGG | 9 cut(s) | 345, 816, 1136, 1363, 1424, 1694, 1721, 2012, 2544 |
| Bse3DI | GCAATG | 1 cut(s) | 2552 |
| BseAI | TCCGGA | 3 cut(s) | 80, 264, 1096 |
| BseGI | GGATG | 4 cut(s) | 77, 261, 2399, 2594 |
| BseMI | GCAATG | 1 cut(s) | 2552 |
| BseNI | ACTGG | 9 cut(s) | 345, 816, 1136, 1363, 1424, 1694, 1721, 2012, 2544 |
| BsePI | GCGCGC | 1 cut(s) | 2728 |
| BseSI | GKGCMC | 3 cut(s) | 463, 1214, 2213 |
| BseYI | CCCAGC | 1 cut(s) | 926 |
| BsgI | GTGCAG | 2 cut(s) | 1067, 2328 |
| Bsh1285I | CGRYCG | 5 cut(s) | 36, 220, 1122, 1410, 2337 |
| BshNI | GGYRCC | 2 cut(s) | 343, 2210 |
| BsiEI | CGRYCG | 5 cut(s) | 36, 220, 1122, 1410, 2337 |
| BsiHKAI | GWGCWC | 8 cut(s) | 113, 297, 582, 615, 1143, 1431, 2227, 2298 |
| BsiSI | CCGG | 5 cut(s) | 81, 265, 686, 1097, 2207 |
| BsmAI | GTCTC | 3 cut(s) | 526, 1204, 1492 |
| BsmI | GAATGC | 1 cut(s) | 1090 |
| Bsp120I | GGGCCC | 2 cut(s) | 459, 1210 |
| Bsp13I | TCCGGA | 3 cut(s) | 80, 264, 1096 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 1030, 1320, 1608, 1926 |
| Bsp68I | TCGCGA | 1 cut(s) | 970 |
| BspEI | TCCGGA | 3 cut(s) | 80, 264, 1096 |
| BspMAI | CTGCAG | 1 cut(s) | 2178 |
| BspOI | GCTAGC | 2 cut(s) | 677, 2748 |
| BspT107I | GGYRCC | 2 cut(s) | 343, 2210 |
| BsrDI | GCAATG | 1 cut(s) | 2552 |
| BsrI | ACTGG | 9 cut(s) | 345, 816, 1136, 1363, 1424, 1694, 1721, 2012, 2544 |
| BssHII | GCGCGC | 1 cut(s) | 2728 |
| BssNI | GRCGYC | 5 cut(s) | 633, 1101, 1230, 1518, 1836 |
| BssT1I | CCWWGG | 3 cut(s) | 2413, 2508, 2608 |
| Bst4CI | ACNGT | 1 cut(s) | 2527 |
| Bst6I | CTCTTC | 2 cut(s) | 563, 1074 |
| BstACI | GRCGYC | 5 cut(s) | 633, 1101, 1230, 1518, 1836 |
| BstDSI | CCRYGG | 1 cut(s) | 2337 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1722, 2040 |
| BstF5I | GGATG | 4 cut(s) | 77, 261, 2399, 2594 |
| BstH2I | RGCGCY | 3 cut(s) | 977, 2429, 2624 |
| BstMAI | GTCTC | 3 cut(s) | 526, 1204, 1492 |
| BstMCI | CGRYCG | 5 cut(s) | 36, 220, 1122, 1410, 2337 |
| BstNSI | RCATGY | 1 cut(s) | 926 |
| BstSFI | CTRYAG | 5 cut(s) | 477, 738, 825, 1911, 2174 |
| BstSLI | GKGCMC | 3 cut(s) | 463, 1214, 2213 |
| BstV2I | GAAGAC | 1 cut(s) | 2706 |
| BstX2I | RGATCY | 4 cut(s) | 96, 1114, 1402, 2635 |
| BstYI | RGATCY | 4 cut(s) | 96, 1114, 1402, 2635 |
| BtgI | CCRYGG | 1 cut(s) | 2337 |
| BtgZI | GCGATG | 2 cut(s) | 1738, 2056 |
| BtsCI | GGATG | 4 cut(s) | 77, 261, 2399, 2594 |
| BtsIMutI | CAGTG | 5 cut(s) | 1017, 1143, 1263, 1431, 1551 |
| BtuMI | TCGCGA | 1 cut(s) | 970 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1670, 1988 |
| Cfr42I | CCGCGG | 1 cut(s) | 2340 |
| CseI | GACGC | 4 cut(s) | 641, 1109, 1134, 1422 |
| Csp6I | GTAC | 6 cut(s) | 1685, 1808, 2003, 2126, 2243, 2259 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 966, 1001 |
| CviAII | CATG | 7 cut(s) | 770, 857, 923, 1339, 1627, 1945, 2783 |
| CviQI | GTAC | 6 cut(s) | 1685, 1808, 2003, 2126, 2243, 2259 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2187 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2187 |
| Eam1104I | CTCTTC | 2 cut(s) | 563, 1074 |
| EarI | CTCTTC | 2 cut(s) | 563, 1074 |
| EciI | GGCGGA | 2 cut(s) | 1358, 1646 |
| Ecl136II | GAGCTC | 5 cut(s) | 111, 295, 580, 2225, 2296 |
| Eco130I | CCWWGG | 3 cut(s) | 2413, 2508, 2608 |
| Eco147I | AGGCCT | 1 cut(s) | 643 |
| Eco24I | GRGCYC | 7 cut(s) | 113, 297, 463, 582, 1214, 2227, 2298 |
| Eco47III | AGCGCT | 2 cut(s) | 2427, 2622 |
| Eco53kI | GAGCTC | 5 cut(s) | 111, 295, 580, 2225, 2296 |
| Eco57I | CTGAAG | 2 cut(s) | 924, 2289 |
| EcoICRI | GAGCTC | 5 cut(s) | 111, 295, 580, 2225, 2296 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1722, 2040 |
| EcoT14I | CCWWGG | 3 cut(s) | 2413, 2508, 2608 |
| EcoT38I | GRGCYC | 7 cut(s) | 113, 297, 463, 582, 1214, 2227, 2298 |
| ErhI | CCWWGG | 3 cut(s) | 2413, 2508, 2608 |
| FaeI | CATG | 7 cut(s) | 773, 860, 926, 1342, 1630, 1948, 2786 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 154, 186, 2220, 2252 |
| FatI | CATG | 7 cut(s) | 769, 856, 922, 1338, 1626, 1944, 2782 |
| FauI | CCCGC | 9 cut(s) | 49, 142, 233, 604, 1198, 1486, 1780, 1876, 2098 |
| FauNDI | CATATG | 1 cut(s) | 2290 |
| FblI | GTMKAC | 2 cut(s) | 444, 480 |
| FokI | GGATG | 4 cut(s) | 64, 248, 2386, 2581 |
| FriOI | GRGCYC | 7 cut(s) | 113, 297, 463, 582, 1214, 2227, 2298 |
| FspBI | CTAG | 8 cut(s) | 674, 1811, 2039, 2129, 2414, 2609, 2745, 2756 |
| GsaI | CCCAGC | 1 cut(s) | 930 |
| GsuI | CTGGAG | 6 cut(s) | 936, 1704, 1779, 1809, 2097, 2127 |
| HaeII | RGCGCY | 3 cut(s) | 977, 2429, 2624 |
| HapII | CCGG | 5 cut(s) | 81, 265, 686, 1097, 2207 |
| HgaI | GACGC | 4 cut(s) | 641, 1109, 1134, 1422 |
| Hin1I | GRCGYC | 5 cut(s) | 633, 1101, 1230, 1518, 1836 |
| Hin1II | CATG | 7 cut(s) | 773, 860, 926, 1342, 1630, 1948, 2786 |
| HincII | GTYRAC | 2 cut(s) | 445, 529 |
| HindII | GTYRAC | 2 cut(s) | 445, 529 |
| HindIII | AAGCTT | 1 cut(s) | 2795 |
| HpaII | CCGG | 5 cut(s) | 81, 265, 686, 1097, 2207 |
| HphI | GGTGA | 6 cut(s) | 1140, 1304, 1428, 1592, 2429, 2624 |
| Hpy166II | GTNNAC | 7 cut(s) | 401, 445, 481, 529, 713, 1808, 2126 |
| Hpy8I | GTNNAC | 7 cut(s) | 401, 445, 481, 529, 713, 1808, 2126 |
| Hpy99I | CGWCG | 7 cut(s) | 909, 1256, 1384, 1544, 1715, 1862, 2033 |
| HpyCH4III | ACNGT | 1 cut(s) | 2527 |
| HpyCH4IV | ACGT | 4 cut(s) | 1230, 1518, 1836, 2257 |
| HpyCH4V | TGCA | 7 cut(s) | 1048, 2176, 2302, 2345, 2384, 2579, 2786 |
| HpySE526I | ACGT | 4 cut(s) | 1230, 1518, 1836, 2257 |
| Hsp92I | GRCGYC | 5 cut(s) | 633, 1101, 1230, 1518, 1836 |
| Hsp92II | CATG | 7 cut(s) | 773, 860, 926, 1342, 1630, 1948, 2786 |
| Kpn2I | TCCGGA | 3 cut(s) | 80, 264, 1096 |
| KspI | CCGCGG | 1 cut(s) | 2340 |
| LmnI | GCTCC | 6 cut(s) | 123, 307, 682, 1093, 1825, 2143 |
| LweI | GCATC | 8 cut(s) | 352, 463, 708, 1732, 2050, 2408, 2603, 2731 |
| MaeI | CTAG | 8 cut(s) | 674, 1811, 2039, 2129, 2414, 2609, 2745, 2756 |
| MaeII | ACGT | 4 cut(s) | 1230, 1518, 1836, 2257 |
| MflI | RGATCY | 4 cut(s) | 96, 1114, 1402, 2635 |
| MluCI | AATT | 7 cut(s) | 139, 323, 370, 705, 2276, 2516, 2711 |
| MlyI | GAGTC | 7 cut(s) | 532, 1280, 1568, 1886, 2175, 2402, 2597 |
| MmeI | TCCRAC | 1 cut(s) | 361 |
| MroI | TCCGGA | 3 cut(s) | 80, 264, 1096 |
| MroXI | GAANNNNTTC | 1 cut(s) | 999 |
| MseI | TTAA | 2 cut(s) | 606, 2322 |
| MslI | CAYNNNNRTG | 1 cut(s) | 608 |
| MspA1I | CMGCKG | 5 cut(s) | 599, 944, 1871, 2216, 2339 |
| MspI | CCGG | 5 cut(s) | 81, 265, 686, 1097, 2207 |
| Mva1269I | GAATGC | 1 cut(s) | 1090 |
| NciI | CCSGG | 2 cut(s) | 686, 2208 |
| NdeI | CATATG | 1 cut(s) | 2290 |
| NheI | GCTAGC | 2 cut(s) | 673, 2744 |
| NlaIII | CATG | 7 cut(s) | 773, 860, 926, 1342, 1630, 1948, 2786 |
| NmeAIII | GCCGAG | 1 cut(s) | 301 |
| NmuCI | GTSAC | 9 cut(s) | 1146, 1226, 1434, 1514, 1832, 2149, 2405, 2527, 2600 |
| NruI | TCGCGA | 1 cut(s) | 970 |
| NspI | RCATGY | 1 cut(s) | 926 |
| PaqCI | CACCTGC | 4 cut(s) | 1117, 1405, 1655, 1973 |
| PasI | CCCWGGG | 2 cut(s) | 780, 867 |
| PauI | GCGCGC | 1 cut(s) | 2728 |
| PceI | AGGCCT | 1 cut(s) | 643 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 450, 2254, 2428, 2623 |
| PctI | GAATGC | 1 cut(s) | 1090 |
| PdmI | GAANNNNTTC | 1 cut(s) | 999 |
| PfeI | GAWTC | 4 cut(s) | 151, 165, 393, 901 |
| PflFI | GACNNNGTC | 1 cut(s) | 1496 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 407 |
| PfoI | TCCNGGA | 1 cut(s) | 952 |
| Ple19I | CGATCG | 2 cut(s) | 1122, 1410 |
| PleI | GAGTC | 7 cut(s) | 532, 1280, 1568, 1886, 2175, 2402, 2597 |
| PpsI | GAGTC | 7 cut(s) | 532, 1280, 1568, 1886, 2175, 2402, 2597 |
| PpuMI | RGGWCCY | 6 cut(s) | 989, 1371, 1498, 1702, 2020, 2189 |
| PshBI | ATTAAT | 1 cut(s) | 2322 |
| PsiI | TTATAA | 1 cut(s) | 375 |
| Psp124BI | GAGCTC | 5 cut(s) | 113, 297, 582, 2227, 2298 |
| Psp5II | RGGWCCY | 6 cut(s) | 989, 1371, 1498, 1702, 2020, 2189 |
| PspFI | CCCAGC | 1 cut(s) | 926 |
| PspOMI | GGGCCC | 2 cut(s) | 459, 1210 |
| PspPPI | RGGWCCY | 6 cut(s) | 989, 1371, 1498, 1702, 2020, 2189 |
| PstI | CTGCAG | 1 cut(s) | 2178 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1670, 1988 |
| PsuI | RGATCY | 4 cut(s) | 96, 1114, 1402, 2635 |
| PsyI | GACNNNGTC | 1 cut(s) | 1496 |
| PteI | GCGCGC | 1 cut(s) | 2728 |
| PvuI | CGATCG | 2 cut(s) | 1122, 1410 |
| PvuII | CAGCTG | 1 cut(s) | 944 |
| RruI | TCGCGA | 1 cut(s) | 970 |
| RsaI | GTAC | 6 cut(s) | 1686, 1809, 2004, 2127, 2244, 2260 |
| RsaNI | GTAC | 6 cut(s) | 1685, 1808, 2003, 2126, 2243, 2259 |
| RseI | CAYNNNNRTG | 1 cut(s) | 608 |
| SacI | GAGCTC | 5 cut(s) | 113, 297, 582, 2227, 2298 |
| SacII | CCGCGG | 1 cut(s) | 2340 |
| SalI | GTCGAC | 1 cut(s) | 443 |
| SaqAI | TTAA | 2 cut(s) | 606, 2322 |
| SchI | GAGTC | 7 cut(s) | 532, 1280, 1568, 1886, 2175, 2402, 2597 |
| SfaNI | GCATC | 8 cut(s) | 352, 463, 708, 1732, 2050, 2408, 2603, 2731 |
| SfcI | CTRYAG | 5 cut(s) | 477, 738, 825, 1911, 2174 |
| Sfr303I | CCGCGG | 1 cut(s) | 2340 |
| SgrBI | CCGCGG | 1 cut(s) | 2340 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 608 |
| SmlI | CTYRAG | 2 cut(s) | 720, 2226 |
| SmoI | CTYRAG | 2 cut(s) | 720, 2226 |
| Sse9I | AATT | 7 cut(s) | 139, 323, 370, 705, 2276, 2516, 2711 |
| SseBI | AGGCCT | 1 cut(s) | 643 |
| SspMI | CTAG | 8 cut(s) | 674, 1811, 2039, 2129, 2414, 2609, 2745, 2756 |
| SstI | GAGCTC | 5 cut(s) | 113, 297, 582, 2227, 2298 |
| StuI | AGGCCT | 1 cut(s) | 643 |
| StyI | CCWWGG | 3 cut(s) | 2413, 2508, 2608 |
| TaaI | ACNGT | 1 cut(s) | 2527 |
| TaiI | ACGT | 4 cut(s) | 1233, 1521, 1839, 2260 |
| TaqII | GACCGA | 3 cut(s) | 386, 503, 822 |
| TasI | AATT | 7 cut(s) | 139, 323, 370, 705, 2276, 2516, 2711 |
| TatI | WGTACW | 2 cut(s) | 1807, 2125 |
| TauI | GCSGC | 8 cut(s) | 59, 91, 243, 275, 2253, 2342, 2379, 2574 |
| TfiI | GAWTC | 4 cut(s) | 151, 165, 393, 901 |
| Tru1I | TTAA | 2 cut(s) | 606, 2322 |
| Tru9I | TTAA | 2 cut(s) | 606, 2322 |
| TscAI | CASTG | 5 cut(s) | 1024, 1143, 1270, 1431, 1558 |
| TseFI | GTSAC | 9 cut(s) | 1146, 1226, 1434, 1514, 1832, 2149, 2405, 2527, 2600 |
| Tsp45I | GTSAC | 9 cut(s) | 1146, 1226, 1434, 1514, 1832, 2149, 2405, 2527, 2600 |
| TspDTI | ATGAA | 9 cut(s) | 807, 894, 1086, 1347, 1635, 1953, 2172, 2289, 2340 |
| TspGWI | ACGGA | 1 cut(s) | 1091 |
| TspRI | CASTG | 5 cut(s) | 1024, 1143, 1270, 1431, 1558 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1496 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 407 |
| VspI | ATTAAT | 1 cut(s) | 2322 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1722, 2040 |
| XapI | RAATTY | 1 cut(s) | 2276 |
| XbaI | TCTAGA | 1 cut(s) | 2755 |
| XceI | RCATGY | 1 cut(s) | 926 |
| XmaJI | CCTAGG | 2 cut(s) | 2413, 2608 |
| XmiI | GTMKAC | 2 cut(s) | 444, 480 |
| XmnI | GAANNNNTTC | 1 cut(s) | 999 |
| XspI | CTAG | 8 cut(s) | 674, 1811, 2039, 2129, 2414, 2609, 2745, 2756 |
| ZraI | GACGTC | 3 cut(s) | 1231, 1519, 1837 |