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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 340 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 742 |
| AccBSI | CCGCTC | 2 cut(s) | 262, 867 |
| AccII | CGCG | 5 cut(s) | 8, 134, 597, 756, 803 |
| AccIII | TCCGGA | 2 cut(s) | 432, 547 |
| AclWI | GGATC | 2 cut(s) | 430, 443 |
| AcsI | RAATTY | 1 cut(s) | 825 |
| AcvI | CACGTG | 1 cut(s) | 935 |
| AcyI | GRCGYC | 1 cut(s) | 337 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 53, 54, 330, 742 |
| AgsI | TTSAA | 5 cut(s) | 293, 464, 560, 611, 830 |
| AleI | CACNNNNGTG | 2 cut(s) | 667, 723 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 198, 230 |
| AluBI | AGCT | 6 cut(s) | 127, 301, 450, 563, 701, 776 |
| AluI | AGCT | 6 cut(s) | 127, 301, 450, 563, 701, 776 |
| Alw21I | GWGCWC | 2 cut(s) | 129, 940 |
| Alw26I | GTCTC | 8 cut(s) | 103, 328, 344, 646, 783, 790, 825, 925 |
| AlwI | GGATC | 2 cut(s) | 430, 443 |
| Ama87I | CYCGRG | 5 cut(s) | 455, 492, 623, 643, 793 |
| Aor13HI | TCCGGA | 2 cut(s) | 432, 547 |
| AoxI | GGCC | 2 cut(s) | 682, 727 |
| ApeKI | GCWGC | 2 cut(s) | 301, 499 |
| ApoI | RAATTY | 1 cut(s) | 825 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 903, 935 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 275, 632 |
| AspLEI | GCGC | 6 cut(s) | 10, 362, 475, 674, 805, 916 |
| AspS9I | GGNCC | 5 cut(s) | 424, 430, 647, 682, 890 |
| AsuC2I | CCSGG | 4 cut(s) | 428, 521, 569, 765 |
| AsuHPI | GGTGA | 3 cut(s) | 628, 779, 868 |
| AvaI | CYCGRG | 5 cut(s) | 455, 492, 623, 643, 793 |
| AvaII | GGWCC | 4 cut(s) | 424, 430, 647, 890 |
| BaeGI | GKGCMC | 1 cut(s) | 718 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 140, 173 |
| BamHI | GGATCC | 1 cut(s) | 435 |
| BanII | GRGCYC | 2 cut(s) | 129, 252 |
| BbrPI | CACGTG | 1 cut(s) | 935 |
| BbsI | GAAGAC | 1 cut(s) | 281 |
| Bbv12I | GWGCWC | 2 cut(s) | 129, 940 |
| BbvI | GCAGC | 2 cut(s) | 288, 511 |
| BccI | CCATC | 3 cut(s) | 196, 524, 729 |
| BceAI | ACGGC | 3 cut(s) | 266, 623, 836 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 167, 201 |
| BciVI | GTATCC | 1 cut(s) | 168 |
| BcnI | CCSGG | 4 cut(s) | 428, 521, 569, 765 |
| BcoDI | GTCTC | 8 cut(s) | 103, 328, 344, 646, 783, 790, 825, 925 |
| BfaI | CTAG | 4 cut(s) | 440, 702, 848, 900 |
| BfoI | RGCGCY | 3 cut(s) | 363, 476, 917 |
| BfuI | GTATCC | 1 cut(s) | 168 |
| BglII | AGATCT | 1 cut(s) | 832 |
| BisI | GCNGC | 3 cut(s) | 302, 500, 904 |
| BlsI | GCNGC | 3 cut(s) | 303, 501, 905 |
| Bme1390I | CCNGG | 4 cut(s) | 428, 521, 569, 765 |
| Bme18I | GGWCC | 4 cut(s) | 424, 430, 647, 890 |
| BmeT110I | CYCGRG | 5 cut(s) | 455, 492, 623, 643, 793 |
| BmgT120I | GGNCC | 5 cut(s) | 424, 430, 647, 682, 890 |
| BmiI | GGNNCC | 4 cut(s) | 426, 437, 648, 649 |
| BmrFI | CCNGG | 4 cut(s) | 428, 521, 569, 765 |
| BmsI | GCATC | 2 cut(s) | 157, 609 |
| BpiI | GAAGAC | 1 cut(s) | 281 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BpuMI | CCSGG | 4 cut(s) | 428, 521, 569, 765 |
| BsaAI | YACGTR | 1 cut(s) | 935 |
| BsaHI | GRCGYC | 1 cut(s) | 337 |
| BsaI | GGTCTC | 1 cut(s) | 825 |
| BsaJI | CCNNGG | 6 cut(s) | 63, 152, 456, 567, 665, 852 |
| BsaWI | WCCGGW | 3 cut(s) | 105, 432, 547 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 198, 228, 322, 352 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 53, 54, 330, 742 |
| Bse118I | RCCGGY | 1 cut(s) | 928 |
| Bse3DI | GCAATG | 1 cut(s) | 83 |
| BseAI | TCCGGA | 2 cut(s) | 432, 547 |
| BseDI | CCNNGG | 6 cut(s) | 63, 152, 456, 567, 665, 852 |
| BseGI | GGATG | 3 cut(s) | 124, 385, 516 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 53, 54, 330, 742 |
| BseMI | GCAATG | 1 cut(s) | 83 |
| BseRI | GAGGAG | 3 cut(s) | 224, 306, 346 |
| BseSI | GKGCMC | 1 cut(s) | 718 |
| BseXI | GCAGC | 2 cut(s) | 288, 511 |
| Bsh1236I | CGCG | 5 cut(s) | 8, 134, 597, 756, 803 |
| BshFI | GGCC | 2 cut(s) | 684, 729 |
| BsiHKAI | GWGCWC | 2 cut(s) | 129, 940 |
| BsiHKCI | CYCGRG | 5 cut(s) | 455, 492, 623, 643, 793 |
| BsiSI | CCGG | 8 cut(s) | 106, 428, 433, 521, 548, 569, 764, 929 |
| BslFI | GGGAC | 3 cut(s) | 338, 410, 633 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 53, 54, 330, 742 |
| BsmAI | GTCTC | 8 cut(s) | 103, 328, 344, 646, 783, 790, 825, 925 |
| BsmBI | CGTCTC | 3 cut(s) | 328, 344, 646 |
| BsmFI | GGGAC | 3 cut(s) | 338, 410, 633 |
| BsnI | GGCC | 2 cut(s) | 684, 729 |
| Bso31I | GGTCTC | 1 cut(s) | 825 |
| BsoBI | CYCGRG | 5 cut(s) | 455, 492, 623, 643, 793 |
| Bsp1286I | GDGCHC | 4 cut(s) | 129, 252, 718, 940 |
| Bsp13I | TCCGGA | 2 cut(s) | 432, 547 |
| Bsp143I | GATC | 3 cut(s) | 435, 769, 832 |
| Bsp68I | TCGCGA | 2 cut(s) | 134, 756 |
| BspANI | GGCC | 2 cut(s) | 684, 729 |
| BspEI | TCCGGA | 2 cut(s) | 432, 547 |
| BspFNI | CGCG | 5 cut(s) | 8, 134, 597, 756, 803 |
| BspLI | GGNNCC | 4 cut(s) | 426, 437, 648, 649 |
| BspPI | GGATC | 2 cut(s) | 430, 443 |
| BspQI | GCTCTTC | 2 cut(s) | 134, 871 |
| BspTNI | GGTCTC | 1 cut(s) | 825 |
| BsrBI | CCGCTC | 2 cut(s) | 262, 867 |
| BsrDI | GCAATG | 1 cut(s) | 83 |
| BsrFI | RCCGGY | 1 cut(s) | 928 |
| BssAI | RCCGGY | 1 cut(s) | 928 |
| BssECI | CCNNGG | 6 cut(s) | 63, 152, 456, 567, 665, 852 |
| BssMI | GATC | 3 cut(s) | 435, 769, 832 |
| BssNI | GRCGYC | 1 cut(s) | 337 |
| Bst4CI | ACNGT | 3 cut(s) | 367, 483, 580 |
| Bst6I | CTCTTC | 3 cut(s) | 134, 754, 871 |
| BstACI | GRCGYC | 1 cut(s) | 337 |
| BstBAI | YACGTR | 1 cut(s) | 935 |
| BstC8I | GCNNGC | 8 cut(s) | 6, 186, 410, 452, 599, 708, 865, 869 |
| BstDEI | CTNAG | 1 cut(s) | 686 |
| BstDSI | CCRYGG | 1 cut(s) | 852 |
| BstEII | GGTNACC | 1 cut(s) | 856 |
| BstF5I | GGATG | 3 cut(s) | 124, 385, 516 |
| BstFNI | CGCG | 5 cut(s) | 8, 134, 597, 756, 803 |
| BstH2I | RGCGCY | 3 cut(s) | 363, 476, 917 |
| BstHHI | GCGC | 6 cut(s) | 10, 362, 475, 674, 805, 916 |
| BstKTI | GATC | 3 cut(s) | 438, 772, 835 |
| BstMAI | GTCTC | 8 cut(s) | 103, 328, 344, 646, 783, 790, 825, 925 |
| BstMBI | GATC | 3 cut(s) | 435, 769, 832 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 569, 707, 848 |
| BstPI | GGTNACC | 1 cut(s) | 856 |
| BstSCI | CCNGG | 4 cut(s) | 426, 519, 567, 763 |
| BstSLI | GKGCMC | 1 cut(s) | 718 |
| BstUI | CGCG | 5 cut(s) | 8, 134, 597, 756, 803 |
| BstV1I | GCAGC | 2 cut(s) | 288, 511 |
| BstV2I | GAAGAC | 1 cut(s) | 281 |
| BstX2I | RGATCY | 2 cut(s) | 435, 832 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 327, 725 |
| BstYI | RGATCY | 2 cut(s) | 435, 832 |
| BsuI | GTATCC | 1 cut(s) | 168 |
| BsuRI | GGCC | 2 cut(s) | 684, 729 |
| BtgI | CCRYGG | 1 cut(s) | 852 |
| BtsCI | GGATG | 3 cut(s) | 124, 385, 516 |
| BtuMI | TCGCGA | 2 cut(s) | 134, 756 |
| Cac8I | GCNNGC | 8 cut(s) | 6, 186, 410, 452, 599, 708, 865, 869 |
| CfoI | GCGC | 6 cut(s) | 10, 362, 475, 674, 805, 916 |
| Cfr10I | RCCGGY | 1 cut(s) | 928 |
| Cfr13I | GGNCC | 5 cut(s) | 424, 430, 647, 682, 890 |
| CpoI | CGGWCCG | 1 cut(s) | 430 |
| CspI | CGGWCCG | 1 cut(s) | 430 |
| CviAII | CATG | 1 cut(s) | 511 |
| DdeI | CTNAG | 1 cut(s) | 686 |
| DpnI | GATC | 3 cut(s) | 437, 771, 834 |
| DpnII | GATC | 3 cut(s) | 435, 769, 832 |
| Eam1104I | CTCTTC | 3 cut(s) | 134, 754, 871 |
| EarI | CTCTTC | 3 cut(s) | 134, 754, 871 |
| EciI | GGCGGA | 1 cut(s) | 206 |
| Ecl136II | GAGCTC | 1 cut(s) | 127 |
| Eco24I | GRGCYC | 2 cut(s) | 129, 252 |
| Eco31I | GGTCTC | 1 cut(s) | 825 |
| Eco32I | GATATC | 1 cut(s) | 655 |
| Eco47I | GGWCC | 4 cut(s) | 424, 430, 647, 890 |
| Eco53kI | GAGCTC | 1 cut(s) | 127 |
| Eco72I | CACGTG | 1 cut(s) | 935 |
| Eco88I | CYCGRG | 5 cut(s) | 455, 492, 623, 643, 793 |
| Eco91I | GGTNACC | 1 cut(s) | 856 |
| EcoICRI | GAGCTC | 1 cut(s) | 127 |
| EcoO109I | RGGNCCY | 2 cut(s) | 647, 682 |
| EcoO65I | GGTNACC | 1 cut(s) | 856 |
| EcoRV | GATATC | 1 cut(s) | 655 |
| EcoT38I | GRGCYC | 2 cut(s) | 129, 252 |
| Esp3I | CGTCTC | 3 cut(s) | 328, 344, 646 |
| FaeI | CATG | 1 cut(s) | 514 |
| FaiI | YATR | 3 cut(s) | 72, 486, 512 |
| FaqI | GGGAC | 3 cut(s) | 338, 410, 633 |
| FatI | CATG | 1 cut(s) | 510 |
| FauI | CCCGC | 5 cut(s) | 250, 260, 267, 602, 872 |
| Fnu4HI | GCNGC | 3 cut(s) | 302, 500, 904 |
| FokI | GGATG | 3 cut(s) | 131, 372, 503 |
| FriOI | GRGCYC | 2 cut(s) | 129, 252 |
| Fsp4HI | GCNGC | 3 cut(s) | 302, 500, 904 |
| FspBI | CTAG | 4 cut(s) | 440, 702, 848, 900 |
| GlaI | GCGC | 6 cut(s) | 9, 361, 474, 673, 804, 915 |
| GluI | GCNGC | 3 cut(s) | 302, 500, 904 |
| HaeII | RGCGCY | 3 cut(s) | 363, 476, 917 |
| HaeIII | GGCC | 2 cut(s) | 684, 729 |
| HapII | CCGG | 8 cut(s) | 106, 428, 433, 521, 548, 569, 764, 929 |
| HhaI | GCGC | 6 cut(s) | 10, 362, 475, 674, 805, 916 |
| Hin1I | GRCGYC | 1 cut(s) | 337 |
| Hin1II | CATG | 1 cut(s) | 514 |
| Hin6I | GCGC | 6 cut(s) | 8, 360, 473, 672, 803, 914 |
| HinP1I | GCGC | 6 cut(s) | 8, 360, 473, 672, 803, 914 |
| HincII | GTYRAC | 2 cut(s) | 52, 100 |
| HindII | GTYRAC | 2 cut(s) | 52, 100 |
| HinfI | GANTC | 6 cut(s) | 231, 311, 746, 791, 798, 808 |
| HpaII | CCGG | 8 cut(s) | 106, 428, 433, 521, 548, 569, 764, 929 |
| HphI | GGTGA | 3 cut(s) | 628, 779, 868 |
| Hpy166II | GTNNAC | 2 cut(s) | 52, 100 |
| Hpy188I | TCNGA | 1 cut(s) | 198 |
| Hpy8I | GTNNAC | 2 cut(s) | 52, 100 |
| HpyAV | CCTTC | 1 cut(s) | 301 |
| HpyCH4III | ACNGT | 3 cut(s) | 367, 483, 580 |
| HpyCH4IV | ACGT | 2 cut(s) | 337, 934 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 569, 707, 848 |
| HpyF3I | CTNAG | 1 cut(s) | 686 |
| HpySE526I | ACGT | 2 cut(s) | 337, 934 |
| Hsp92I | GRCGYC | 1 cut(s) | 337 |
| Hsp92II | CATG | 1 cut(s) | 514 |
| HspAI | GCGC | 6 cut(s) | 8, 360, 473, 672, 803, 914 |
| KflI | GGGWCCC | 1 cut(s) | 647 |
| Kpn2I | TCCGGA | 2 cut(s) | 432, 547 |
| Kzo9I | GATC | 3 cut(s) | 435, 769, 832 |
| LguI | GCTCTTC | 2 cut(s) | 134, 871 |
| LmnI | GCTCC | 1 cut(s) | 49 |
| Lsp1109I | GCAGC | 2 cut(s) | 288, 511 |
| LweI | GCATC | 2 cut(s) | 157, 609 |
| MaeI | CTAG | 4 cut(s) | 440, 702, 848, 900 |
| MaeII | ACGT | 2 cut(s) | 337, 934 |
| MaeIII | GTNAC | 2 cut(s) | 529, 856 |
| MalI | GATC | 3 cut(s) | 437, 771, 834 |
| MbiI | CCGCTC | 2 cut(s) | 262, 867 |
| MboI | GATC | 3 cut(s) | 435, 769, 832 |
| MboII | GAAGA | 7 cut(s) | 121, 211, 281, 476, 640, 741, 888 |
| MfeI | CAATTG | 1 cut(s) | 885 |
| MflI | RGATCY | 2 cut(s) | 435, 832 |
| MhlI | GDGCHC | 4 cut(s) | 129, 252, 718, 940 |
| MluCI | AATT | 6 cut(s) | 179, 272, 413, 543, 825, 885 |
| MlyI | GAGTC | 4 cut(s) | 225, 740, 785, 792 |
| MmeI | TCCRAC | 1 cut(s) | 308 |
| MroI | TCCGGA | 2 cut(s) | 432, 547 |
| MroXI | GAANNNNTTC | 2 cut(s) | 275, 632 |
| MslI | CAYNNNNRTG | 2 cut(s) | 667, 723 |
| MspA1I | CMGCKG | 1 cut(s) | 301 |
| MspI | CCGG | 8 cut(s) | 106, 428, 433, 521, 548, 569, 764, 929 |
| MspR9I | CCNGG | 4 cut(s) | 428, 521, 569, 765 |
| MunI | CAATTG | 1 cut(s) | 885 |
| MvnI | CGCG | 5 cut(s) | 8, 134, 597, 756, 803 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 569, 707, 848 |
| NciI | CCSGG | 4 cut(s) | 428, 521, 569, 765 |
| NdeII | GATC | 3 cut(s) | 435, 769, 832 |
| NlaIII | CATG | 1 cut(s) | 514 |
| NlaIV | GGNNCC | 4 cut(s) | 426, 437, 648, 649 |
| NmeAIII | GCCGAG | 2 cut(s) | 88, 271 |
| NmuCI | GTSAC | 1 cut(s) | 856 |
| NruI | TCGCGA | 2 cut(s) | 134, 756 |
| OliI | CACNNNNGTG | 2 cut(s) | 667, 723 |
| PaeR7I | CTCGAG | 2 cut(s) | 492, 793 |
| PciSI | GCTCTTC | 2 cut(s) | 134, 871 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 12, 60, 243 |
| PdmI | GAANNNNTTC | 2 cut(s) | 275, 632 |
| PfeI | GAWTC | 2 cut(s) | 311, 808 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 742 |
| PfoI | TCCNGGA | 1 cut(s) | 519 |
| PkrI | GCNGC | 3 cut(s) | 303, 501, 905 |
| PleI | GAGTC | 4 cut(s) | 225, 740, 785, 792 |
| PmaCI | CACGTG | 1 cut(s) | 935 |
| PmlI | CACGTG | 1 cut(s) | 935 |
| PpsI | GAGTC | 4 cut(s) | 225, 740, 785, 792 |
| Ppu21I | YACGTR | 1 cut(s) | 935 |
| PpuMI | RGGWCCY | 1 cut(s) | 647 |
| Psp124BI | GAGCTC | 1 cut(s) | 129 |
| Psp5II | RGGWCCY | 1 cut(s) | 647 |
| PspCI | CACGTG | 1 cut(s) | 935 |
| PspEI | GGTNACC | 1 cut(s) | 856 |
| PspN4I | GGNNCC | 4 cut(s) | 426, 437, 648, 649 |
| PspPI | GGNCC | 5 cut(s) | 424, 430, 647, 682, 890 |
| PspPPI | RGGWCCY | 1 cut(s) | 647 |
| PsuI | RGATCY | 2 cut(s) | 435, 832 |
| PvuII | CAGCTG | 1 cut(s) | 301 |
| RruI | TCGCGA | 2 cut(s) | 134, 756 |
| RseI | CAYNNNNRTG | 2 cut(s) | 667, 723 |
| Rsr2I | CGGWCCG | 1 cut(s) | 430 |
| RsrII | CGGWCCG | 1 cut(s) | 430 |
| SacI | GAGCTC | 1 cut(s) | 129 |
| SapI | GCTCTTC | 2 cut(s) | 134, 871 |
| SatI | GCNGC | 3 cut(s) | 302, 500, 904 |
| Sau3AI | GATC | 3 cut(s) | 435, 769, 832 |
| Sau96I | GGNCC | 5 cut(s) | 424, 430, 647, 682, 890 |
| SchI | GAGTC | 4 cut(s) | 225, 740, 785, 792 |
| ScrFI | CCNGG | 4 cut(s) | 428, 521, 569, 765 |
| SduI | GDGCHC | 4 cut(s) | 129, 252, 718, 940 |
| SfaNI | GCATC | 2 cut(s) | 157, 609 |
| Sfr274I | CTCGAG | 2 cut(s) | 492, 793 |
| SinI | GGWCC | 4 cut(s) | 424, 430, 647, 890 |
| SlaI | CTCGAG | 2 cut(s) | 492, 793 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 667, 723 |
| SmlI | CTYRAG | 3 cut(s) | 263, 492, 793 |
| SmoI | CTYRAG | 3 cut(s) | 263, 492, 793 |
| Sse9I | AATT | 6 cut(s) | 179, 272, 413, 543, 825, 885 |
| SspMI | CTAG | 4 cut(s) | 440, 702, 848, 900 |
| SstI | GAGCTC | 1 cut(s) | 129 |
| StyD4I | CCNGG | 4 cut(s) | 426, 519, 567, 763 |
| TaaI | ACNGT | 3 cut(s) | 367, 483, 580 |
| TaiI | ACGT | 2 cut(s) | 340, 937 |
| TaqI | TCGA | 9 cut(s) | 15, 145, 190, 237, 401, 493, 772, 794, 909 |
| TaqII | GACCGA | 1 cut(s) | 807 |
| TasI | AATT | 6 cut(s) | 179, 272, 413, 543, 825, 885 |
| TauI | GCSGC | 1 cut(s) | 906 |
| TfiI | GAWTC | 2 cut(s) | 311, 808 |
| TseFI | GTSAC | 1 cut(s) | 856 |
| TseI | GCWGC | 2 cut(s) | 301, 499 |
| Tsp45I | GTSAC | 1 cut(s) | 856 |
| TspGWI | ACGGA | 1 cut(s) | 85 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 742 |
| VpaK11BI | GGWCC | 4 cut(s) | 424, 430, 647, 890 |
| XapI | RAATTY | 1 cut(s) | 825 |
| XhoI | CTCGAG | 2 cut(s) | 492, 793 |
| XmnI | GAANNNNTTC | 2 cut(s) | 275, 632 |
| XspI | CTAG | 4 cut(s) | 440, 702, 848, 900 |
| ZraI | GACGTC | 1 cut(s) | 338 |