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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 196 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 397, 514 |
| AccII | CGCG | 4 cut(s) | 257, 467, 575, 717 |
| AciI | CCGC | 9 cut(s) | 257, 334, 455, 465, 678, 722, 744, 784, 797 |
| AcoI | YGGCCR | 1 cut(s) | 456 |
| AcsI | RAATTY | 1 cut(s) | 597 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 232, 357, 358, 397, 514 |
| AgsI | TTSAA | 3 cut(s) | 72, 344, 602 |
| AjnI | CCWGG | 4 cut(s) | 396, 609, 645, 702 |
| AluBI | AGCT | 4 cut(s) | 137, 473, 623, 713 |
| AluI | AGCT | 4 cut(s) | 137, 473, 623, 713 |
| Alw26I | GTCTC | 5 cut(s) | 124, 506, 555, 562, 597 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 251, 703 |
| Ama87I | CYCGRG | 2 cut(s) | 227, 356 |
| AoxI | GGCC | 8 cut(s) | 270, 330, 382, 456, 546, 612, 723, 799 |
| ApeKI | GCWGC | 4 cut(s) | 28, 623, 667, 746 |
| ApoI | RAATTY | 1 cut(s) | 597 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 384 |
| AspLEI | GCGC | 2 cut(s) | 469, 577 |
| AspS9I | GGNCC | 7 cut(s) | 271, 331, 401, 546, 613, 724, 799 |
| AsuHPI | GGTGA | 4 cut(s) | 176, 551, 575, 755 |
| AsuNHI | GCTAGC | 1 cut(s) | 473 |
| AvaI | CYCGRG | 2 cut(s) | 227, 356 |
| AvaII | GGWCC | 1 cut(s) | 401 |
| BauI | CACGAG | 1 cut(s) | 21 |
| BbvI | GCAGC | 4 cut(s) | 40, 610, 679, 733 |
| BccI | CCATC | 5 cut(s) | 53, 209, 399, 437, 508 |
| BceAI | ACGGC | 2 cut(s) | 443, 533 |
| BciT130I | CCWGG | 4 cut(s) | 398, 611, 647, 704 |
| BcoDI | GTCTC | 5 cut(s) | 124, 506, 555, 562, 597 |
| BfaI | CTAG | 5 cut(s) | 375, 474, 620, 662, 767 |
| BfuAI | ACCTGC | 1 cut(s) | 196 |
| BisI | GCNGC | 8 cut(s) | 29, 456, 624, 668, 678, 723, 744, 747 |
| BlsI | GCNGC | 8 cut(s) | 30, 457, 625, 669, 679, 724, 745, 748 |
| Bme1390I | CCNGG | 4 cut(s) | 398, 611, 647, 704 |
| Bme18I | GGWCC | 1 cut(s) | 401 |
| BmeT110I | CYCGRG | 2 cut(s) | 227, 356 |
| BmgT120I | GGNCC | 7 cut(s) | 271, 331, 401, 546, 613, 724, 799 |
| BmiI | GGNNCC | 3 cut(s) | 261, 273, 402 |
| BmrFI | CCNGG | 4 cut(s) | 398, 611, 647, 704 |
| BmrI | ACTGGG | 1 cut(s) | 631 |
| BmsI | GCATC | 4 cut(s) | 4, 26, 361, 742 |
| BmtI | GCTAGC | 1 cut(s) | 477 |
| BmuI | ACTGGG | 1 cut(s) | 631 |
| BpmI | CTGGAG | 2 cut(s) | 225, 260 |
| BpuEI | CTTGAG | 3 cut(s) | 287, 586, 693 |
| BsaBI | GATNNNNATC | 1 cut(s) | 137 |
| BsaI | GGTCTC | 2 cut(s) | 506, 597 |
| BsaJI | CCNNGG | 5 cut(s) | 126, 397, 645, 684, 802 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 204, 234 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 232, 357, 358, 397, 514 |
| Bse118I | RCCGGY | 2 cut(s) | 157, 232 |
| Bse1I | ACTGG | 2 cut(s) | 637, 756 |
| Bse3DI | GCAATG | 1 cut(s) | 45 |
| Bse8I | GATNNNNATC | 1 cut(s) | 137 |
| BseBI | CCWGG | 4 cut(s) | 398, 611, 647, 704 |
| BseDI | CCNNGG | 5 cut(s) | 126, 397, 645, 684, 802 |
| BseJI | GATNNNNATC | 1 cut(s) | 137 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 232, 357, 358, 397, 514 |
| BseMI | GCAATG | 1 cut(s) | 45 |
| BseMII | CTCAG | 1 cut(s) | 440 |
| BseNI | ACTGG | 2 cut(s) | 637, 756 |
| BseRI | GAGGAG | 1 cut(s) | 143 |
| BseX3I | CGGCCG | 1 cut(s) | 456 |
| BseXI | GCAGC | 4 cut(s) | 40, 610, 679, 733 |
| BsgI | GTGCAG | 1 cut(s) | 288 |
| Bsh1236I | CGCG | 4 cut(s) | 257, 467, 575, 717 |
| Bsh1285I | CGRYCG | 1 cut(s) | 459 |
| BshFI | GGCC | 8 cut(s) | 272, 332, 384, 458, 548, 614, 725, 801 |
| BsiEI | CGRYCG | 1 cut(s) | 459 |
| BsiHKCI | CYCGRG | 2 cut(s) | 227, 356 |
| BsiSI | CCGG | 2 cut(s) | 158, 233 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 232, 357, 358, 397, 514 |
| BsmAI | GTCTC | 5 cut(s) | 124, 506, 555, 562, 597 |
| BsmBI | CGTCTC | 1 cut(s) | 124 |
| BsnI | GGCC | 8 cut(s) | 272, 332, 384, 458, 548, 614, 725, 801 |
| Bso31I | GGTCTC | 2 cut(s) | 506, 597 |
| BsoBI | CYCGRG | 2 cut(s) | 227, 356 |
| Bsp143I | GATC | 1 cut(s) | 541 |
| Bsp68I | TCGCGA | 1 cut(s) | 717 |
| BspACI | CCGC | 9 cut(s) | 257, 334, 455, 465, 678, 722, 744, 784, 797 |
| BspANI | GGCC | 8 cut(s) | 272, 332, 384, 458, 548, 614, 725, 801 |
| BspCNI | CTCAG | 1 cut(s) | 441 |
| BspFNI | CGCG | 4 cut(s) | 257, 467, 575, 717 |
| BspLI | GGNNCC | 3 cut(s) | 261, 273, 402 |
| BspMI | ACCTGC | 1 cut(s) | 196 |
| BspOI | GCTAGC | 1 cut(s) | 477 |
| BspQI | GCTCTTC | 1 cut(s) | 645 |
| BspTNI | GGTCTC | 2 cut(s) | 506, 597 |
| BsrDI | GCAATG | 1 cut(s) | 45 |
| BsrFI | RCCGGY | 2 cut(s) | 157, 232 |
| BsrI | ACTGG | 2 cut(s) | 637, 756 |
| BssAI | RCCGGY | 2 cut(s) | 157, 232 |
| BssECI | CCNNGG | 5 cut(s) | 126, 397, 645, 684, 802 |
| BssMI | GATC | 1 cut(s) | 541 |
| BssSI | CACGAG | 1 cut(s) | 21 |
| Bst2BI | CACGAG | 1 cut(s) | 21 |
| Bst2UI | CCWGG | 4 cut(s) | 398, 611, 647, 704 |
| Bst6I | CTCTTC | 2 cut(s) | 526, 645 |
| BstC8I | GCNNGC | 8 cut(s) | 303, 334, 338, 425, 471, 475, 715, 799 |
| BstDEI | CTNAG | 1 cut(s) | 449 |
| BstFNI | CGCG | 4 cut(s) | 257, 467, 575, 717 |
| BstHHI | GCGC | 2 cut(s) | 469, 577 |
| BstKTI | GATC | 1 cut(s) | 544 |
| BstMAI | GTCTC | 5 cut(s) | 124, 506, 555, 562, 597 |
| BstMBI | GATC | 1 cut(s) | 541 |
| BstMCI | CGRYCG | 1 cut(s) | 459 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 278, 464, 620, 632, 686, 719, 731, 740, 752 |
| BstNI | CCWGG | 4 cut(s) | 398, 611, 647, 704 |
| BstNSI | RCATGY | 1 cut(s) | 427 |
| BstSCI | CCNGG | 4 cut(s) | 396, 609, 645, 702 |
| BstUI | CGCG | 4 cut(s) | 257, 467, 575, 717 |
| BstV1I | GCAGC | 4 cut(s) | 40, 610, 679, 733 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 203 |
| BstZI | CGGCCG | 1 cut(s) | 456 |
| BsuRI | GGCC | 8 cut(s) | 272, 332, 384, 458, 548, 614, 725, 801 |
| BtuMI | TCGCGA | 1 cut(s) | 717 |
| BveI | ACCTGC | 1 cut(s) | 196 |
| Cac8I | GCNNGC | 8 cut(s) | 303, 334, 338, 425, 471, 475, 715, 799 |
| CaiI | CAGNNNCTG | 2 cut(s) | 251, 703 |
| CfoI | GCGC | 2 cut(s) | 469, 577 |
| Cfr10I | RCCGGY | 2 cut(s) | 157, 232 |
| Cfr13I | GGNCC | 7 cut(s) | 271, 331, 401, 546, 613, 724, 799 |
| CseI | GACGC | 1 cut(s) | 51 |
| CviAII | CATG | 1 cut(s) | 424 |
| DdeI | CTNAG | 1 cut(s) | 449 |
| DpnI | GATC | 1 cut(s) | 543 |
| DpnII | GATC | 1 cut(s) | 541 |
| EaeI | YGGCCR | 1 cut(s) | 456 |
| EagI | CGGCCG | 1 cut(s) | 456 |
| Eam1104I | CTCTTC | 2 cut(s) | 526, 645 |
| EarI | CTCTTC | 2 cut(s) | 526, 645 |
| EciI | GGCGGA | 1 cut(s) | 773 |
| EclXI | CGGCCG | 1 cut(s) | 456 |
| Eco147I | AGGCCT | 1 cut(s) | 384 |
| Eco31I | GGTCTC | 2 cut(s) | 506, 597 |
| Eco32I | GATATC | 1 cut(s) | 607 |
| Eco47I | GGWCC | 1 cut(s) | 401 |
| Eco52I | CGGCCG | 1 cut(s) | 456 |
| Eco88I | CYCGRG | 2 cut(s) | 227, 356 |
| EcoO109I | RGGNCCY | 2 cut(s) | 271, 401 |
| EcoRII | CCWGG | 4 cut(s) | 396, 609, 645, 702 |
| EcoRV | GATATC | 1 cut(s) | 607 |
| EcoT22I | ATGCAT | 1 cut(s) | 19 |
| Esp3I | CGTCTC | 1 cut(s) | 124 |
| FaeI | CATG | 1 cut(s) | 427 |
| FaiI | YATR | 3 cut(s) | 173, 425, 795 |
| FatI | CATG | 1 cut(s) | 423 |
| FauI | CCCGC | 2 cut(s) | 341, 790 |
| Fnu4HI | GCNGC | 8 cut(s) | 29, 456, 624, 668, 678, 723, 744, 747 |
| Fsp4HI | GCNGC | 8 cut(s) | 29, 456, 624, 668, 678, 723, 744, 747 |
| FspBI | CTAG | 5 cut(s) | 375, 474, 620, 662, 767 |
| GlaI | GCGC | 2 cut(s) | 468, 576 |
| GluI | GCNGC | 8 cut(s) | 29, 456, 624, 668, 678, 723, 744, 747 |
| GsuI | CTGGAG | 2 cut(s) | 225, 260 |
| HaeIII | GGCC | 8 cut(s) | 272, 332, 384, 458, 548, 614, 725, 801 |
| HapII | CCGG | 2 cut(s) | 158, 233 |
| HgaI | GACGC | 1 cut(s) | 51 |
| HhaI | GCGC | 2 cut(s) | 469, 577 |
| Hin1II | CATG | 1 cut(s) | 427 |
| Hin6I | GCGC | 2 cut(s) | 467, 575 |
| HinP1I | GCGC | 2 cut(s) | 467, 575 |
| HincII | GTYRAC | 1 cut(s) | 178 |
| HindII | GTYRAC | 1 cut(s) | 178 |
| HinfI | GANTC | 3 cut(s) | 68, 518, 570 |
| HpaII | CCGG | 2 cut(s) | 158, 233 |
| HphI | GGTGA | 4 cut(s) | 176, 551, 575, 755 |
| Hpy166II | GTNNAC | 3 cut(s) | 178, 223, 642 |
| Hpy188I | TCNGA | 6 cut(s) | 52, 67, 317, 434, 450, 685 |
| Hpy188III | TCNNGA | 9 cut(s) | 23, 77, 142, 204, 266, 404, 412, 602, 716 |
| Hpy8I | GTNNAC | 3 cut(s) | 178, 223, 642 |
| HpyAV | CCTTC | 4 cut(s) | 203, 374, 395, 596 |
| HpyCH4V | TGCA | 3 cut(s) | 17, 38, 305 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 278, 464, 620, 632, 686, 719, 731, 740, 752 |
| HpyF3I | CTNAG | 1 cut(s) | 449 |
| Hsp92II | CATG | 1 cut(s) | 427 |
| HspAI | GCGC | 2 cut(s) | 467, 575 |
| Kzo9I | GATC | 1 cut(s) | 541 |
| LguI | GCTCTTC | 1 cut(s) | 645 |
| LmnI | GCTCC | 2 cut(s) | 103, 259 |
| Lsp1109I | GCAGC | 4 cut(s) | 40, 610, 679, 733 |
| LweI | GCATC | 4 cut(s) | 4, 26, 361, 742 |
| MaeI | CTAG | 5 cut(s) | 375, 474, 620, 662, 767 |
| MaeIII | GTNAC | 3 cut(s) | 346, 460, 628 |
| MalI | GATC | 1 cut(s) | 543 |
| MboI | GATC | 1 cut(s) | 541 |
| MboII | GAAGA | 2 cut(s) | 513, 662 |
| MluCI | AATT | 2 cut(s) | 72, 597 |
| MlyI | GAGTC | 2 cut(s) | 512, 564 |
| MmeI | TCCRAC | 1 cut(s) | 420 |
| Mph1103I | ATGCAT | 1 cut(s) | 19 |
| MroXI | GAANNNNTTC | 1 cut(s) | 384 |
| MspA1I | CMGCKG | 1 cut(s) | 746 |
| MspI | CCGG | 2 cut(s) | 158, 233 |
| MspR9I | CCNGG | 4 cut(s) | 398, 611, 647, 704 |
| MvaI | CCWGG | 4 cut(s) | 398, 611, 647, 704 |
| MvnI | CGCG | 4 cut(s) | 257, 467, 575, 717 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 278, 464, 620, 632, 686, 719, 731, 740, 752 |
| NdeII | GATC | 1 cut(s) | 541 |
| NheI | GCTAGC | 1 cut(s) | 473 |
| NlaIII | CATG | 1 cut(s) | 427 |
| NlaIV | GGNNCC | 3 cut(s) | 261, 273, 402 |
| NmeAIII | GCCGAG | 1 cut(s) | 151 |
| NmuCI | GTSAC | 3 cut(s) | 346, 460, 628 |
| NruI | TCGCGA | 1 cut(s) | 717 |
| NsiI | ATGCAT | 1 cut(s) | 19 |
| NspI | RCATGY | 1 cut(s) | 427 |
| PaeI | GCATGC | 1 cut(s) | 427 |
| PceI | AGGCCT | 1 cut(s) | 384 |
| PciSI | GCTCTTC | 1 cut(s) | 645 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 102, 123, 147 |
| PdmI | GAANNNNTTC | 1 cut(s) | 384 |
| PfeI | GAWTC | 1 cut(s) | 68 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 397, 514 |
| PkrI | GCNGC | 8 cut(s) | 30, 457, 625, 669, 679, 724, 745, 748 |
| PleI | GAGTC | 2 cut(s) | 512, 564 |
| PpsI | GAGTC | 2 cut(s) | 512, 564 |
| PpuMI | RGGWCCY | 1 cut(s) | 401 |
| Psp5II | RGGWCCY | 1 cut(s) | 401 |
| Psp6I | CCWGG | 4 cut(s) | 396, 609, 645, 702 |
| PspGI | CCWGG | 4 cut(s) | 396, 609, 645, 702 |
| PspN4I | GGNNCC | 3 cut(s) | 261, 273, 402 |
| PspPI | GGNCC | 7 cut(s) | 271, 331, 401, 546, 613, 724, 799 |
| PspPPI | RGGWCCY | 1 cut(s) | 401 |
| PstNI | CAGNNNCTG | 2 cut(s) | 251, 703 |
| RruI | TCGCGA | 1 cut(s) | 717 |
| SapI | GCTCTTC | 1 cut(s) | 645 |
| SatI | GCNGC | 8 cut(s) | 29, 456, 624, 668, 678, 723, 744, 747 |
| Sau3AI | GATC | 1 cut(s) | 541 |
| Sau96I | GGNCC | 7 cut(s) | 271, 331, 401, 546, 613, 724, 799 |
| SchI | GAGTC | 2 cut(s) | 512, 564 |
| ScrFI | CCNGG | 4 cut(s) | 398, 611, 647, 704 |
| SfaNI | GCATC | 4 cut(s) | 4, 26, 361, 742 |
| SinI | GGWCC | 1 cut(s) | 401 |
| SmlI | CTYRAG | 3 cut(s) | 266, 565, 708 |
| SmoI | CTYRAG | 3 cut(s) | 266, 565, 708 |
| SphI | GCATGC | 1 cut(s) | 427 |
| Sse9I | AATT | 2 cut(s) | 72, 597 |
| SseBI | AGGCCT | 1 cut(s) | 384 |
| SsiI | CCGC | 9 cut(s) | 257, 334, 455, 465, 678, 722, 744, 784, 797 |
| SspMI | CTAG | 5 cut(s) | 375, 474, 620, 662, 767 |
| StuI | AGGCCT | 1 cut(s) | 384 |
| StyD4I | CCNGG | 4 cut(s) | 396, 609, 645, 702 |
| TaqI | TCGA | 2 cut(s) | 141, 413 |
| TaqII | GACCGA | 1 cut(s) | 579 |
| TasI | AATT | 2 cut(s) | 72, 597 |
| TauI | GCSGC | 4 cut(s) | 458, 680, 725, 746 |
| TfiI | GAWTC | 1 cut(s) | 68 |
| TseFI | GTSAC | 3 cut(s) | 346, 460, 628 |
| TseI | GCWGC | 4 cut(s) | 28, 623, 667, 746 |
| Tsp45I | GTSAC | 3 cut(s) | 346, 460, 628 |
| TspDTI | ATGAA | 1 cut(s) | 168 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 397, 514 |
| VpaK11BI | GGWCC | 1 cut(s) | 401 |
| XapI | RAATTY | 1 cut(s) | 597 |
| XceI | RCATGY | 1 cut(s) | 427 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 436 |
| XmnI | GAANNNNTTC | 1 cut(s) | 384 |
| XspI | CTAG | 5 cut(s) | 375, 474, 620, 662, 767 |
| Zsp2I | ATGCAT | 1 cut(s) | 19 |