Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 102, 137, 442 |
| AciI | CCGC | 5 cut(s) | 127, 137, 231, 381, 426 |
| AclWI | GGATC | 2 cut(s) | 113, 126 |
| AcoI | YGGCCR | 2 cut(s) | 204, 334 |
| AcsI | RAATTY | 1 cut(s) | 352 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 57, 136, 185, 300 |
| AgeI | ACCGGT | 1 cut(s) | 395 |
| AgsI | TTSAA | 2 cut(s) | 352, 373 |
| AjnI | CCWGG | 1 cut(s) | 92 |
| Alw26I | GTCTC | 1 cut(s) | 10 |
| AlwI | GGATC | 2 cut(s) | 113, 126 |
| AoxI | GGCC | 4 cut(s) | 65, 123, 204, 334 |
| ApoI | RAATTY | 1 cut(s) | 352 |
| AseI | ATTAAT | 1 cut(s) | 159 |
| AsiGI | ACCGGT | 1 cut(s) | 395 |
| AspS9I | GGNCC | 4 cut(s) | 66, 124, 398, 416 |
| AsuC2I | CCSGG | 3 cut(s) | 13, 131, 203 |
| AsuHPI | GGTGA | 2 cut(s) | 151, 283 |
| AvaII | GGWCC | 2 cut(s) | 398, 416 |
| BamHI | GGATCC | 1 cut(s) | 118 |
| BauI | CACGAG | 1 cut(s) | 446 |
| BccI | CCATC | 2 cut(s) | 218, 302 |
| BceAI | ACGGC | 2 cut(s) | 168, 321 |
| BciT130I | CCWGG | 1 cut(s) | 94 |
| BcnI | CCSGG | 3 cut(s) | 13, 131, 203 |
| BcoDI | GTCTC | 1 cut(s) | 10 |
| BfaI | CTAG | 1 cut(s) | 180 |
| BisI | GCNGC | 1 cut(s) | 381 |
| BlsI | GCNGC | 1 cut(s) | 382 |
| Bme1390I | CCNGG | 4 cut(s) | 13, 94, 131, 203 |
| Bme18I | GGWCC | 2 cut(s) | 398, 416 |
| BmgT120I | GGNCC | 4 cut(s) | 66, 124, 398, 416 |
| BmiI | GGNNCC | 1 cut(s) | 120 |
| BmrFI | CCNGG | 4 cut(s) | 13, 94, 131, 203 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 74, 106 |
| BpuMI | CCSGG | 3 cut(s) | 13, 131, 203 |
| BsaJI | CCNNGG | 2 cut(s) | 184, 201 |
| BsaWI | WCCGGW | 1 cut(s) | 395 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 57, 136, 185, 300 |
| Bse118I | RCCGGY | 1 cut(s) | 395 |
| Bse3DI | GCAATG | 1 cut(s) | 452 |
| BseBI | CCWGG | 1 cut(s) | 94 |
| BseDI | CCNNGG | 2 cut(s) | 184, 201 |
| BseGI | GGATG | 1 cut(s) | 210 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 57, 136, 185, 300 |
| BseMI | GCAATG | 1 cut(s) | 452 |
| Bsh1236I | CGCG | 3 cut(s) | 102, 137, 442 |
| BshFI | GGCC | 4 cut(s) | 67, 125, 206, 336 |
| BshTI | ACCGGT | 1 cut(s) | 395 |
| BsiSI | CCGG | 6 cut(s) | 13, 122, 130, 203, 281, 396 |
| BslFI | GGGAC | 1 cut(s) | 146 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 57, 136, 185, 300 |
| BsmAI | GTCTC | 1 cut(s) | 10 |
| BsmFI | GGGAC | 1 cut(s) | 146 |
| BsnI | GGCC | 4 cut(s) | 67, 125, 206, 336 |
| Bsp143I | GATC | 1 cut(s) | 118 |
| Bsp68I | TCGCGA | 1 cut(s) | 102 |
| BspACI | CCGC | 5 cut(s) | 127, 137, 231, 381, 426 |
| BspANI | GGCC | 4 cut(s) | 67, 125, 206, 336 |
| BspFNI | CGCG | 3 cut(s) | 102, 137, 442 |
| BspLI | GGNNCC | 1 cut(s) | 120 |
| BspPI | GGATC | 2 cut(s) | 113, 126 |
| BsrDI | GCAATG | 1 cut(s) | 452 |
| BsrFI | RCCGGY | 1 cut(s) | 395 |
| BssAI | RCCGGY | 1 cut(s) | 395 |
| BssECI | CCNNGG | 2 cut(s) | 184, 201 |
| BssMI | GATC | 1 cut(s) | 118 |
| BssSI | CACGAG | 1 cut(s) | 446 |
| Bst2BI | CACGAG | 1 cut(s) | 446 |
| Bst2UI | CCWGG | 1 cut(s) | 94 |
| BstC8I | GCNNGC | 3 cut(s) | 127, 197, 476 |
| BstDSI | CCRYGG | 1 cut(s) | 184 |
| BstF5I | GGATG | 1 cut(s) | 210 |
| BstFNI | CGCG | 3 cut(s) | 102, 137, 442 |
| BstKTI | GATC | 1 cut(s) | 121 |
| BstMAI | GTCTC | 1 cut(s) | 10 |
| BstMBI | GATC | 1 cut(s) | 118 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 328, 434 |
| BstNI | CCWGG | 1 cut(s) | 94 |
| BstSCI | CCNGG | 4 cut(s) | 11, 92, 129, 201 |
| BstUI | CGCG | 3 cut(s) | 102, 137, 442 |
| BstX2I | RGATCY | 1 cut(s) | 118 |
| BstYI | RGATCY | 1 cut(s) | 118 |
| BsuRI | GGCC | 4 cut(s) | 67, 125, 206, 336 |
| BtgI | CCRYGG | 1 cut(s) | 184 |
| BtsCI | GGATG | 1 cut(s) | 210 |
| BtsI | GCAGTG | 1 cut(s) | 32 |
| BtsIMutI | CAGTG | 1 cut(s) | 32 |
| BtuMI | TCGCGA | 1 cut(s) | 102 |
| Cac8I | GCNNGC | 3 cut(s) | 127, 197, 476 |
| Cfr10I | RCCGGY | 1 cut(s) | 395 |
| Cfr13I | GGNCC | 4 cut(s) | 66, 124, 398, 416 |
| CseI | GACGC | 2 cut(s) | 26, 143 |
| CspAI | ACCGGT | 1 cut(s) | 395 |
| CviAII | CATG | 1 cut(s) | 332 |
| DpnI | GATC | 1 cut(s) | 120 |
| DpnII | GATC | 1 cut(s) | 118 |
| EaeI | YGGCCR | 2 cut(s) | 204, 334 |
| Eco47I | GGWCC | 2 cut(s) | 398, 416 |
| EcoRI | GAATTC | 1 cut(s) | 352 |
| EcoRII | CCWGG | 1 cut(s) | 92 |
| FaeI | CATG | 1 cut(s) | 335 |
| FaiI | YATR | 6 cut(s) | 45, 264, 266, 272, 327, 333 |
| FaqI | GGGAC | 1 cut(s) | 146 |
| FatI | CATG | 1 cut(s) | 331 |
| FauI | CCCGC | 1 cut(s) | 134 |
| FauNDI | CATATG | 1 cut(s) | 264 |
| Fnu4HI | GCNGC | 1 cut(s) | 381 |
| FokI | GGATG | 1 cut(s) | 197 |
| Fsp4HI | GCNGC | 1 cut(s) | 381 |
| FspBI | CTAG | 1 cut(s) | 180 |
| GluI | GCNGC | 1 cut(s) | 381 |
| HaeIII | GGCC | 4 cut(s) | 67, 125, 206, 336 |
| HapII | CCGG | 6 cut(s) | 13, 122, 130, 203, 281, 396 |
| HgaI | GACGC | 2 cut(s) | 26, 143 |
| Hin1II | CATG | 1 cut(s) | 335 |
| HinfI | GANTC | 2 cut(s) | 8, 444 |
| HpaII | CCGG | 6 cut(s) | 13, 122, 130, 203, 281, 396 |
| HphI | GGTGA | 2 cut(s) | 151, 283 |
| Hpy166II | GTNNAC | 1 cut(s) | 416 |
| Hpy188III | TCNNGA | 1 cut(s) | 101 |
| Hpy8I | GTNNAC | 1 cut(s) | 416 |
| HpyAV | CCTTC | 1 cut(s) | 468 |
| HpyCH4V | TGCA | 2 cut(s) | 331, 493 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 328, 434 |
| Hsp92II | CATG | 1 cut(s) | 335 |
| Kzo9I | GATC | 1 cut(s) | 118 |
| LpnPI | CCDG | 9 cut(s) | 26, 79, 106, 135, 143, 216, 285, 294, 409 |
| MaeI | CTAG | 1 cut(s) | 180 |
| MalI | GATC | 1 cut(s) | 120 |
| MboI | GATC | 1 cut(s) | 118 |
| MboII | GAAGA | 1 cut(s) | 490 |
| MflI | RGATCY | 1 cut(s) | 118 |
| MluCI | AATT | 1 cut(s) | 352 |
| MlyI | GAGTC | 2 cut(s) | 2, 438 |
| MmeI | TCCRAC | 1 cut(s) | 196 |
| MnlI | CCTC | 5 cut(s) | 76, 79, 369, 397, 416 |
| MseI | TTAA | 1 cut(s) | 159 |
| MspI | CCGG | 6 cut(s) | 13, 122, 130, 203, 281, 396 |
| MspR9I | CCNGG | 4 cut(s) | 13, 94, 131, 203 |
| MvaI | CCWGG | 1 cut(s) | 94 |
| MvnI | CGCG | 3 cut(s) | 102, 137, 442 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 328, 434 |
| NciI | CCSGG | 3 cut(s) | 13, 131, 203 |
| NdeI | CATATG | 1 cut(s) | 264 |
| NdeII | GATC | 1 cut(s) | 118 |
| NlaIII | CATG | 1 cut(s) | 335 |
| NlaIV | GGNNCC | 1 cut(s) | 120 |
| NruI | TCGCGA | 1 cut(s) | 102 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 106 |
| PfoI | TCCNGGA | 1 cut(s) | 11 |
| PinAI | ACCGGT | 1 cut(s) | 395 |
| PkrI | GCNGC | 1 cut(s) | 382 |
| PleI | GAGTC | 2 cut(s) | 2, 438 |
| PpsI | GAGTC | 2 cut(s) | 2, 438 |
| PshBI | ATTAAT | 1 cut(s) | 159 |
| Psp6I | CCWGG | 1 cut(s) | 92 |
| PspGI | CCWGG | 1 cut(s) | 92 |
| PspN4I | GGNNCC | 1 cut(s) | 120 |
| PspPI | GGNCC | 4 cut(s) | 66, 124, 398, 416 |
| PsuI | RGATCY | 1 cut(s) | 118 |
| RruI | TCGCGA | 1 cut(s) | 102 |
| SaqAI | TTAA | 1 cut(s) | 159 |
| SatI | GCNGC | 1 cut(s) | 381 |
| Sau3AI | GATC | 1 cut(s) | 118 |
| Sau96I | GGNCC | 4 cut(s) | 66, 124, 398, 416 |
| SchI | GAGTC | 2 cut(s) | 2, 438 |
| ScrFI | CCNGG | 4 cut(s) | 13, 94, 131, 203 |
| SetI | ASST | 4 cut(s) | 245, 257, 310, 421 |
| SinI | GGWCC | 2 cut(s) | 398, 416 |
| Sse9I | AATT | 1 cut(s) | 352 |
| SsiI | CCGC | 5 cut(s) | 127, 137, 231, 381, 426 |
| SspI | AATATT | 1 cut(s) | 276 |
| SspMI | CTAG | 1 cut(s) | 180 |
| StyD4I | CCNGG | 4 cut(s) | 11, 92, 129, 201 |
| TaqI | TCGA | 2 cut(s) | 71, 109 |
| TaqII | GACCGA | 1 cut(s) | 248 |
| TasI | AATT | 1 cut(s) | 352 |
| TauI | GCSGC | 1 cut(s) | 383 |
| Tru1I | TTAA | 1 cut(s) | 159 |
| Tru9I | TTAA | 1 cut(s) | 159 |
| TscAI | CASTG | 1 cut(s) | 32 |
| TspDTI | ATGAA | 2 cut(s) | 17, 473 |
| TspGWI | ACGGA | 1 cut(s) | 153 |
| TspRI | CASTG | 1 cut(s) | 32 |
| VpaK11BI | GGWCC | 2 cut(s) | 398, 416 |
| VspI | ATTAAT | 1 cut(s) | 159 |
| XapI | RAATTY | 1 cut(s) | 352 |
| XspI | CTAG | 1 cut(s) | 180 |