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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 4 cut(s) | 90, 92, 111, 431 |
| AciI | CCGC | 1 cut(s) | 109 |
| AclWI | GGATC | 1 cut(s) | 449 |
| AcuI | CTGAAG | 2 cut(s) | 381, 516 |
| AfaI | GTAC | 3 cut(s) | 8, 21, 291 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 67, 276, 325, 350, 351 |
| AgsI | TTSAA | 2 cut(s) | 50, 443 |
| AhlI | ACTAGT | 1 cut(s) | 208 |
| AjnI | CCWGG | 1 cut(s) | 64 |
| AluBI | AGCT | 3 cut(s) | 163, 424, 448 |
| AluI | AGCT | 3 cut(s) | 163, 424, 448 |
| Alw21I | GWGCWC | 1 cut(s) | 426 |
| Alw26I | GTCTC | 1 cut(s) | 400 |
| AlwI | GGATC | 1 cut(s) | 449 |
| AoxI | GGCC | 2 cut(s) | 265, 278 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 410, 442 |
| AspLEI | GCGC | 2 cut(s) | 92, 113 |
| AspS9I | GGNCC | 1 cut(s) | 266 |
| BanII | GRGCYC | 3 cut(s) | 73, 426, 532 |
| BbsI | GAAGAC | 1 cut(s) | 369 |
| Bbv12I | GWGCWC | 1 cut(s) | 426 |
| BccI | CCATC | 1 cut(s) | 344 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 464, 498 |
| BciT130I | CCWGG | 1 cut(s) | 66 |
| BclI | TGATCA | 1 cut(s) | 370 |
| BcoDI | GTCTC | 1 cut(s) | 400 |
| BcuI | ACTAGT | 1 cut(s) | 208 |
| BfaI | CTAG | 2 cut(s) | 209, 276 |
| BisI | GCNGC | 1 cut(s) | 109 |
| BlsI | GCNGC | 1 cut(s) | 110 |
| BmcAI | AGTACT | 1 cut(s) | 21 |
| Bme1390I | CCNGG | 1 cut(s) | 66 |
| BmgT120I | GGNCC | 1 cut(s) | 266 |
| BmiI | GGNNCC | 4 cut(s) | 59, 72, 268, 531 |
| BmrFI | CCNGG | 1 cut(s) | 66 |
| BmsI | GCATC | 1 cut(s) | 220 |
| BpiI | GAAGAC | 1 cut(s) | 369 |
| BpmI | CTGGAG | 1 cut(s) | 424 |
| BsaJI | CCNNGG | 3 cut(s) | 65, 345, 512 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 265, 295 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 67, 276, 325, 350, 351 |
| Bse1I | ACTGG | 3 cut(s) | 190, 287, 407 |
| BseBI | CCWGG | 1 cut(s) | 66 |
| BseDI | CCNNGG | 3 cut(s) | 65, 345, 512 |
| BseGI | GGATG | 3 cut(s) | 339, 355, 421 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 67, 276, 325, 350, 351 |
| BseMII | CTCAG | 1 cut(s) | 440 |
| BseNI | ACTGG | 3 cut(s) | 190, 287, 407 |
| Bsh1236I | CGCG | 4 cut(s) | 90, 92, 111, 431 |
| BshFI | GGCC | 2 cut(s) | 267, 280 |
| BsiHKAI | GWGCWC | 1 cut(s) | 426 |
| BslFI | GGGAC | 1 cut(s) | 367 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 67, 276, 325, 350, 351 |
| BsmAI | GTCTC | 1 cut(s) | 400 |
| BsmFI | GGGAC | 1 cut(s) | 367 |
| BsnI | GGCC | 2 cut(s) | 267, 280 |
| Bsp1286I | GDGCHC | 3 cut(s) | 73, 426, 532 |
| Bsp143I | GATC | 4 cut(s) | 85, 313, 370, 454 |
| Bsp68I | TCGCGA | 1 cut(s) | 431 |
| BspACI | CCGC | 1 cut(s) | 109 |
| BspANI | GGCC | 2 cut(s) | 267, 280 |
| BspCNI | CTCAG | 1 cut(s) | 441 |
| BspFNI | CGCG | 4 cut(s) | 90, 92, 111, 431 |
| BspLI | GGNNCC | 4 cut(s) | 59, 72, 268, 531 |
| BspPI | GGATC | 1 cut(s) | 449 |
| BspQI | GCTCTTC | 2 cut(s) | 431, 438 |
| BsrI | ACTGG | 3 cut(s) | 190, 287, 407 |
| BssECI | CCNNGG | 3 cut(s) | 65, 345, 512 |
| BssMI | GATC | 4 cut(s) | 85, 313, 370, 454 |
| Bst2UI | CCWGG | 1 cut(s) | 66 |
| Bst6I | CTCTTC | 2 cut(s) | 431, 438 |
| BstC8I | GCNNGC | 5 cut(s) | 94, 138, 187, 299, 487 |
| BstDEI | CTNAG | 2 cut(s) | 16, 449 |
| BstDSI | CCRYGG | 1 cut(s) | 345 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 274 |
| BstF5I | GGATG | 3 cut(s) | 339, 355, 421 |
| BstFNI | CGCG | 4 cut(s) | 90, 92, 111, 431 |
| BstHHI | GCGC | 2 cut(s) | 92, 113 |
| BstKTI | GATC | 4 cut(s) | 88, 316, 373, 457 |
| BstMAI | GTCTC | 1 cut(s) | 400 |
| BstMBI | GATC | 4 cut(s) | 85, 313, 370, 454 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 98, 264 |
| BstNI | CCWGG | 1 cut(s) | 66 |
| BstNSI | RCATGY | 1 cut(s) | 301 |
| BstSCI | CCNGG | 1 cut(s) | 64 |
| BstUI | CGCG | 4 cut(s) | 90, 92, 111, 431 |
| BstV2I | GAAGAC | 1 cut(s) | 369 |
| BstX2I | RGATCY | 1 cut(s) | 454 |
| BstYI | RGATCY | 1 cut(s) | 454 |
| BsuRI | GGCC | 2 cut(s) | 267, 280 |
| BtgI | CCRYGG | 1 cut(s) | 345 |
| BtsCI | GGATG | 3 cut(s) | 339, 355, 421 |
| BtsI | GCAGTG | 1 cut(s) | 39 |
| BtsIMutI | CAGTG | 2 cut(s) | 39, 141 |
| BtuMI | TCGCGA | 1 cut(s) | 431 |
| Cac8I | GCNNGC | 5 cut(s) | 94, 138, 187, 299, 487 |
| CfoI | GCGC | 2 cut(s) | 92, 113 |
| Cfr13I | GGNCC | 1 cut(s) | 266 |
| Csp6I | GTAC | 3 cut(s) | 7, 20, 290 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 28, 63, 167, 202 |
| CviAII | CATG | 1 cut(s) | 298 |
| CviQI | GTAC | 3 cut(s) | 7, 20, 290 |
| DdeI | CTNAG | 2 cut(s) | 16, 449 |
| DpnI | GATC | 4 cut(s) | 87, 315, 372, 456 |
| DpnII | GATC | 4 cut(s) | 85, 313, 370, 454 |
| Eam1104I | CTCTTC | 2 cut(s) | 431, 438 |
| EarI | CTCTTC | 2 cut(s) | 431, 438 |
| Ecl136II | GAGCTC | 1 cut(s) | 424 |
| Eco147I | AGGCCT | 1 cut(s) | 280 |
| Eco24I | GRGCYC | 3 cut(s) | 73, 426, 532 |
| Eco53kI | GAGCTC | 1 cut(s) | 424 |
| Eco57I | CTGAAG | 2 cut(s) | 381, 516 |
| EcoICRI | GAGCTC | 1 cut(s) | 424 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 274 |
| EcoRII | CCWGG | 1 cut(s) | 64 |
| EcoT38I | GRGCYC | 3 cut(s) | 73, 426, 532 |
| FaeI | CATG | 1 cut(s) | 301 |
| FaiI | YATR | 6 cut(s) | 81, 159, 228, 299, 369, 462 |
| FaqI | GGGAC | 1 cut(s) | 367 |
| FatI | CATG | 1 cut(s) | 297 |
| FbaI | TGATCA | 1 cut(s) | 370 |
| Fnu4HI | GCNGC | 1 cut(s) | 109 |
| FokI | GGATG | 3 cut(s) | 326, 362, 428 |
| FriOI | GRGCYC | 3 cut(s) | 73, 426, 532 |
| Fsp4HI | GCNGC | 1 cut(s) | 109 |
| FspBI | CTAG | 2 cut(s) | 209, 276 |
| GlaI | GCGC | 2 cut(s) | 91, 112 |
| GluI | GCNGC | 1 cut(s) | 109 |
| GsuI | CTGGAG | 1 cut(s) | 424 |
| HaeIII | GGCC | 2 cut(s) | 267, 280 |
| HhaI | GCGC | 2 cut(s) | 92, 113 |
| Hin1II | CATG | 1 cut(s) | 301 |
| Hin6I | GCGC | 2 cut(s) | 90, 111 |
| HinP1I | GCGC | 2 cut(s) | 90, 111 |
| HindIII | AAGCTT | 1 cut(s) | 161 |
| HinfI | GANTC | 1 cut(s) | 33 |
| Hpy188I | TCNGA | 3 cut(s) | 127, 385, 394 |
| Hpy188III | TCNNGA | 3 cut(s) | 47, 430, 494 |
| HpyAV | CCTTC | 1 cut(s) | 71 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 98, 264 |
| HpyF3I | CTNAG | 2 cut(s) | 16, 449 |
| Hsp92II | CATG | 1 cut(s) | 301 |
| HspAI | GCGC | 2 cut(s) | 90, 111 |
| Ksp22I | TGATCA | 1 cut(s) | 370 |
| Kzo9I | GATC | 4 cut(s) | 85, 313, 370, 454 |
| LguI | GCTCTTC | 2 cut(s) | 431, 438 |
| LmnI | GCTCC | 4 cut(s) | 76, 175, 255, 535 |
| LpnPI | CCDG | 7 cut(s) | 51, 78, 203, 300, 333, 388, 507 |
| LweI | GCATC | 1 cut(s) | 220 |
| MaeI | CTAG | 2 cut(s) | 209, 276 |
| MaeIII | GTNAC | 1 cut(s) | 477 |
| MalI | GATC | 4 cut(s) | 87, 315, 372, 456 |
| MboI | GATC | 4 cut(s) | 85, 313, 370, 454 |
| MboII | GAAGA | 4 cut(s) | 374, 418, 455, 509 |
| MflI | RGATCY | 1 cut(s) | 454 |
| MhlI | GDGCHC | 3 cut(s) | 73, 426, 532 |
| MluCI | AATT | 2 cut(s) | 76, 261 |
| MmeI | TCCRAC | 2 cut(s) | 229, 417 |
| MnlI | CCTC | 4 cut(s) | 233, 291, 496, 522 |
| MslI | CAYNNNNRTG | 1 cut(s) | 344 |
| MspR9I | CCNGG | 1 cut(s) | 66 |
| MvaI | CCWGG | 1 cut(s) | 66 |
| MvnI | CGCG | 4 cut(s) | 90, 92, 111, 431 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 98, 264 |
| NdeII | GATC | 4 cut(s) | 85, 313, 370, 454 |
| NlaIII | CATG | 1 cut(s) | 301 |
| NlaIV | GGNNCC | 4 cut(s) | 59, 72, 268, 531 |
| NmeAIII | GCCGAG | 1 cut(s) | 493 |
| NruI | TCGCGA | 1 cut(s) | 431 |
| NspI | RCATGY | 1 cut(s) | 301 |
| PaeI | GCATGC | 1 cut(s) | 301 |
| PceI | AGGCCT | 1 cut(s) | 280 |
| PciSI | GCTCTTC | 2 cut(s) | 431, 438 |
| PfeI | GAWTC | 1 cut(s) | 33 |
| PkrI | GCNGC | 1 cut(s) | 110 |
| Psp124BI | GAGCTC | 1 cut(s) | 426 |
| Psp6I | CCWGG | 1 cut(s) | 64 |
| PspGI | CCWGG | 1 cut(s) | 64 |
| PspN4I | GGNNCC | 4 cut(s) | 59, 72, 268, 531 |
| PspPI | GGNCC | 1 cut(s) | 266 |
| PsuI | RGATCY | 1 cut(s) | 454 |
| RruI | TCGCGA | 1 cut(s) | 431 |
| RsaI | GTAC | 3 cut(s) | 8, 21, 291 |
| RsaNI | GTAC | 3 cut(s) | 7, 20, 290 |
| RseI | CAYNNNNRTG | 1 cut(s) | 344 |
| SacI | GAGCTC | 1 cut(s) | 426 |
| SapI | GCTCTTC | 2 cut(s) | 431, 438 |
| SatI | GCNGC | 1 cut(s) | 109 |
| Sau3AI | GATC | 4 cut(s) | 85, 313, 370, 454 |
| Sau96I | GGNCC | 1 cut(s) | 266 |
| ScaI | AGTACT | 1 cut(s) | 21 |
| ScrFI | CCNGG | 1 cut(s) | 66 |
| SduI | GDGCHC | 3 cut(s) | 73, 426, 532 |
| SetI | ASST | 5 cut(s) | 165, 426, 450, 514, 523 |
| SfaNI | GCATC | 1 cut(s) | 220 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 344 |
| SpeI | ACTAGT | 1 cut(s) | 208 |
| SphI | GCATGC | 1 cut(s) | 301 |
| Sse9I | AATT | 2 cut(s) | 76, 261 |
| SseBI | AGGCCT | 1 cut(s) | 280 |
| SsiI | CCGC | 1 cut(s) | 109 |
| SspMI | CTAG | 2 cut(s) | 209, 276 |
| SstI | GAGCTC | 1 cut(s) | 426 |
| StuI | AGGCCT | 1 cut(s) | 280 |
| StyD4I | CCNGG | 1 cut(s) | 64 |
| TasI | AATT | 2 cut(s) | 76, 261 |
| TatI | WGTACW | 3 cut(s) | 6, 19, 289 |
| TauI | GCSGC | 1 cut(s) | 111 |
| TfiI | GAWTC | 1 cut(s) | 33 |
| TscAI | CASTG | 2 cut(s) | 46, 148 |
| TspDTI | ATGAA | 1 cut(s) | 162 |
| TspGWI | ACGGA | 1 cut(s) | 522 |
| TspRI | CASTG | 2 cut(s) | 46, 148 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 274 |
| XceI | RCATGY | 1 cut(s) | 301 |
| XspI | CTAG | 2 cut(s) | 209, 276 |
| ZrmI | AGTACT | 1 cut(s) | 21 |