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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 485 |
| AccII | CGCG | 2 cut(s) | 298, 477 |
| AccIII | TCCGGA | 1 cut(s) | 249 |
| AciI | CCGC | 8 cut(s) | 123, 135, 176, 272, 354, 399, 477, 515 |
| AclWI | GGATC | 3 cut(s) | 108, 121, 325 |
| AcoI | YGGCCR | 2 cut(s) | 177, 396 |
| AfaI | GTAC | 3 cut(s) | 236, 284, 293 |
| AfeI | AGCGCT | 1 cut(s) | 165 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 53, 54, 134, 175, 432, 459, 534, 574 |
| AgsI | TTSAA | 4 cut(s) | 96, 153, 263, 333 |
| AleI | CACNNNNGTG | 1 cut(s) | 47 |
| AluBI | AGCT | 1 cut(s) | 266 |
| AluI | AGCT | 1 cut(s) | 266 |
| Alw26I | GTCTC | 1 cut(s) | 148 |
| AlwI | GGATC | 3 cut(s) | 108, 121, 325 |
| Ama87I | CYCGRG | 1 cut(s) | 485 |
| Aor13HI | TCCGGA | 1 cut(s) | 249 |
| Aor51HI | AGCGCT | 1 cut(s) | 165 |
| AoxI | GGCC | 4 cut(s) | 98, 177, 396, 464 |
| AspLEI | GCGC | 1 cut(s) | 166 |
| AspS9I | GGNCC | 1 cut(s) | 229 |
| AsuC2I | CCSGG | 3 cut(s) | 29, 128, 536 |
| AsuHPI | GGTGA | 1 cut(s) | 373 |
| AvaI | CYCGRG | 1 cut(s) | 485 |
| AvaII | GGWCC | 1 cut(s) | 229 |
| BamHI | GGATCC | 1 cut(s) | 113 |
| BanII | GRGCYC | 1 cut(s) | 484 |
| BauI | CACGAG | 1 cut(s) | 549 |
| BbsI | GAAGAC | 1 cut(s) | 84 |
| BccI | CCATC | 1 cut(s) | 47 |
| BcnI | CCSGG | 3 cut(s) | 29, 128, 536 |
| BcoDI | GTCTC | 1 cut(s) | 148 |
| BfaI | CTAG | 1 cut(s) | 221 |
| BfoI | RGCGCY | 1 cut(s) | 167 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 488 |
| BisI | GCNGC | 3 cut(s) | 177, 354, 399 |
| BlsI | GCNGC | 3 cut(s) | 178, 355, 400 |
| BmcAI | AGTACT | 1 cut(s) | 293 |
| Bme1390I | CCNGG | 3 cut(s) | 29, 128, 536 |
| Bme18I | GGWCC | 1 cut(s) | 229 |
| BmeT110I | CYCGRG | 1 cut(s) | 485 |
| BmgT120I | GGNCC | 1 cut(s) | 229 |
| BmiI | GGNNCC | 4 cut(s) | 115, 231, 481, 492 |
| BmrFI | CCNGG | 3 cut(s) | 29, 128, 536 |
| BpiI | GAAGAC | 1 cut(s) | 84 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 532, 564 |
| BpuMI | CCSGG | 3 cut(s) | 29, 128, 536 |
| BsaJI | CCNNGG | 4 cut(s) | 48, 126, 357, 393 |
| BsaWI | WCCGGW | 1 cut(s) | 249 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 53, 54, 134, 175, 432, 459, 534, 574 |
| Bse118I | RCCGGY | 2 cut(s) | 10, 100 |
| Bse3DI | GCAATG | 1 cut(s) | 498 |
| BseAI | TCCGGA | 1 cut(s) | 249 |
| BseDI | CCNNGG | 4 cut(s) | 48, 126, 357, 393 |
| BseGI | GGATG | 2 cut(s) | 58, 190 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 53, 54, 134, 175, 432, 459, 534, 574 |
| BseMI | GCAATG | 1 cut(s) | 498 |
| BseRI | GAGGAG | 1 cut(s) | 109 |
| Bsh1236I | CGCG | 2 cut(s) | 298, 477 |
| Bsh1285I | CGRYCG | 3 cut(s) | 15, 442, 535 |
| BshFI | GGCC | 4 cut(s) | 100, 179, 398, 466 |
| BsiEI | CGRYCG | 3 cut(s) | 15, 442, 535 |
| BsiHKCI | CYCGRG | 1 cut(s) | 485 |
| BsiSI | CCGG | 6 cut(s) | 11, 28, 101, 128, 250, 535 |
| BslFI | GGGAC | 2 cut(s) | 215, 449 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 53, 54, 134, 175, 432, 459, 534, 574 |
| BsmAI | GTCTC | 1 cut(s) | 148 |
| BsmFI | GGGAC | 2 cut(s) | 215, 449 |
| BsnI | GGCC | 4 cut(s) | 100, 179, 398, 466 |
| BsoBI | CYCGRG | 1 cut(s) | 485 |
| Bsp1286I | GDGCHC | 1 cut(s) | 484 |
| Bsp13I | TCCGGA | 1 cut(s) | 249 |
| Bsp143I | GATC | 3 cut(s) | 16, 113, 317 |
| Bsp68I | TCGCGA | 1 cut(s) | 298 |
| BspACI | CCGC | 8 cut(s) | 123, 135, 176, 272, 354, 399, 477, 515 |
| BspANI | GGCC | 4 cut(s) | 100, 179, 398, 466 |
| BspEI | TCCGGA | 1 cut(s) | 249 |
| BspFNI | CGCG | 2 cut(s) | 298, 477 |
| BspLI | GGNNCC | 4 cut(s) | 115, 231, 481, 492 |
| BspPI | GGATC | 3 cut(s) | 108, 121, 325 |
| BsrDI | GCAATG | 1 cut(s) | 498 |
| BsrFI | RCCGGY | 2 cut(s) | 10, 100 |
| BssAI | RCCGGY | 2 cut(s) | 10, 100 |
| BssECI | CCNNGG | 4 cut(s) | 48, 126, 357, 393 |
| BssMI | GATC | 3 cut(s) | 16, 113, 317 |
| BssSI | CACGAG | 1 cut(s) | 549 |
| BssT1I | CCWWGG | 1 cut(s) | 393 |
| Bst2BI | CACGAG | 1 cut(s) | 549 |
| Bst4CI | ACNGT | 1 cut(s) | 367 |
| Bst6I | CTCTTC | 1 cut(s) | 307 |
| BstC8I | GCNNGC | 2 cut(s) | 215, 300 |
| BstDSI | CCRYGG | 1 cut(s) | 48 |
| BstF5I | GGATG | 2 cut(s) | 58, 190 |
| BstFNI | CGCG | 2 cut(s) | 298, 477 |
| BstH2I | RGCGCY | 1 cut(s) | 167 |
| BstHHI | GCGC | 1 cut(s) | 166 |
| BstKTI | GATC | 3 cut(s) | 19, 116, 320 |
| BstMAI | GTCTC | 1 cut(s) | 148 |
| BstMBI | GATC | 3 cut(s) | 16, 113, 317 |
| BstMCI | CGRYCG | 3 cut(s) | 15, 442, 535 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 488 |
| BstNSI | RCATGY | 1 cut(s) | 413 |
| BstSCI | CCNGG | 3 cut(s) | 27, 126, 534 |
| BstUI | CGCG | 2 cut(s) | 298, 477 |
| BstV2I | GAAGAC | 1 cut(s) | 84 |
| BstX2I | RGATCY | 1 cut(s) | 113 |
| BstYI | RGATCY | 1 cut(s) | 113 |
| BsuRI | GGCC | 4 cut(s) | 100, 179, 398, 466 |
| BtgI | CCRYGG | 1 cut(s) | 48 |
| BtsCI | GGATG | 2 cut(s) | 58, 190 |
| BtuMI | TCGCGA | 1 cut(s) | 298 |
| Cac8I | GCNNGC | 2 cut(s) | 215, 300 |
| CfoI | GCGC | 1 cut(s) | 166 |
| Cfr10I | RCCGGY | 2 cut(s) | 10, 100 |
| Cfr13I | GGNCC | 1 cut(s) | 229 |
| CseI | GACGC | 1 cut(s) | 483 |
| Csp6I | GTAC | 3 cut(s) | 235, 283, 292 |
| CviAII | CATG | 1 cut(s) | 410 |
| CviQI | GTAC | 3 cut(s) | 235, 283, 292 |
| DpnI | GATC | 3 cut(s) | 18, 115, 319 |
| DpnII | GATC | 3 cut(s) | 16, 113, 317 |
| EaeI | YGGCCR | 2 cut(s) | 177, 396 |
| Eam1104I | CTCTTC | 1 cut(s) | 307 |
| EarI | CTCTTC | 1 cut(s) | 307 |
| EciI | GGCGGA | 2 cut(s) | 112, 150 |
| Eco130I | CCWWGG | 1 cut(s) | 393 |
| Eco147I | AGGCCT | 1 cut(s) | 466 |
| Eco24I | GRGCYC | 1 cut(s) | 484 |
| Eco47I | GGWCC | 1 cut(s) | 229 |
| Eco47III | AGCGCT | 1 cut(s) | 165 |
| Eco88I | CYCGRG | 1 cut(s) | 485 |
| EcoT14I | CCWWGG | 1 cut(s) | 393 |
| EcoT38I | GRGCYC | 1 cut(s) | 484 |
| ErhI | CCWWGG | 1 cut(s) | 393 |
| FaeI | CATG | 1 cut(s) | 413 |
| FaiI | YATR | 2 cut(s) | 72, 411 |
| FaqI | GGGAC | 2 cut(s) | 215, 449 |
| FatI | CATG | 1 cut(s) | 409 |
| FauI | CCCGC | 2 cut(s) | 279, 522 |
| Fnu4HI | GCNGC | 3 cut(s) | 177, 354, 399 |
| FokI | GGATG | 2 cut(s) | 65, 177 |
| FriOI | GRGCYC | 1 cut(s) | 484 |
| Fsp4HI | GCNGC | 3 cut(s) | 177, 354, 399 |
| FspBI | CTAG | 1 cut(s) | 221 |
| GlaI | GCGC | 1 cut(s) | 165 |
| GluI | GCNGC | 3 cut(s) | 177, 354, 399 |
| HaeII | RGCGCY | 1 cut(s) | 167 |
| HaeIII | GGCC | 4 cut(s) | 100, 179, 398, 466 |
| HapII | CCGG | 6 cut(s) | 11, 28, 101, 128, 250, 535 |
| HgaI | GACGC | 1 cut(s) | 483 |
| HhaI | GCGC | 1 cut(s) | 166 |
| Hin1II | CATG | 1 cut(s) | 413 |
| Hin6I | GCGC | 1 cut(s) | 164 |
| HinP1I | GCGC | 1 cut(s) | 164 |
| HinfI | GANTC | 1 cut(s) | 241 |
| HpaII | CCGG | 6 cut(s) | 11, 28, 101, 128, 250, 535 |
| HphI | GGTGA | 1 cut(s) | 373 |
| Hpy166II | GTNNAC | 1 cut(s) | 84 |
| Hpy188I | TCNGA | 2 cut(s) | 427, 473 |
| Hpy188III | TCNNGA | 2 cut(s) | 250, 297 |
| Hpy8I | GTNNAC | 1 cut(s) | 84 |
| Hpy99I | CGWCG | 3 cut(s) | 312, 353, 477 |
| HpyAV | CCTTC | 2 cut(s) | 104, 538 |
| HpyCH4III | ACNGT | 1 cut(s) | 367 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 488 |
| Hsp92II | CATG | 1 cut(s) | 413 |
| HspAI | GCGC | 1 cut(s) | 164 |
| Kpn2I | TCCGGA | 1 cut(s) | 249 |
| Kzo9I | GATC | 3 cut(s) | 16, 113, 317 |
| LmnI | GCTCC | 3 cut(s) | 171, 479, 496 |
| LpnPI | CCDG | 6 cut(s) | 24, 41, 114, 141, 263, 548 |
| MaeI | CTAG | 1 cut(s) | 221 |
| MaeIII | GTNAC | 1 cut(s) | 509 |
| MalI | GATC | 3 cut(s) | 18, 115, 319 |
| MboI | GATC | 3 cut(s) | 16, 113, 317 |
| MboII | GAAGA | 5 cut(s) | 11, 77, 84, 324, 440 |
| MflI | RGATCY | 1 cut(s) | 113 |
| MhlI | GDGCHC | 1 cut(s) | 484 |
| MluCI | AATT | 1 cut(s) | 245 |
| MlyI | GAGTC | 1 cut(s) | 235 |
| MmeI | TCCRAC | 1 cut(s) | 496 |
| MroI | TCCGGA | 1 cut(s) | 249 |
| MslI | CAYNNNNRTG | 1 cut(s) | 47 |
| MspI | CCGG | 6 cut(s) | 11, 28, 101, 128, 250, 535 |
| MspR9I | CCNGG | 3 cut(s) | 29, 128, 536 |
| MvnI | CGCG | 2 cut(s) | 298, 477 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 488 |
| NciI | CCSGG | 3 cut(s) | 29, 128, 536 |
| NdeII | GATC | 3 cut(s) | 16, 113, 317 |
| NlaIII | CATG | 1 cut(s) | 413 |
| NlaIV | GGNNCC | 4 cut(s) | 115, 231, 481, 492 |
| NmeAIII | GCCGAG | 1 cut(s) | 382 |
| NruI | TCGCGA | 1 cut(s) | 298 |
| NspI | RCATGY | 1 cut(s) | 413 |
| OliI | CACNNNNGTG | 1 cut(s) | 47 |
| PaeR7I | CTCGAG | 1 cut(s) | 485 |
| PceI | AGGCCT | 1 cut(s) | 466 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 354, 556 |
| PflFI | GACNNNGTC | 1 cut(s) | 88 |
| PkrI | GCNGC | 3 cut(s) | 178, 355, 400 |
| PleI | GAGTC | 1 cut(s) | 235 |
| PpsI | GAGTC | 1 cut(s) | 235 |
| PspN4I | GGNNCC | 4 cut(s) | 115, 231, 481, 492 |
| PspPI | GGNCC | 1 cut(s) | 229 |
| PspXI | VCTCGAGB | 1 cut(s) | 485 |
| PsuI | RGATCY | 1 cut(s) | 113 |
| PsyI | GACNNNGTC | 1 cut(s) | 88 |
| RruI | TCGCGA | 1 cut(s) | 298 |
| RsaI | GTAC | 3 cut(s) | 236, 284, 293 |
| RsaNI | GTAC | 3 cut(s) | 235, 283, 292 |
| RseI | CAYNNNNRTG | 1 cut(s) | 47 |
| SatI | GCNGC | 3 cut(s) | 177, 354, 399 |
| Sau3AI | GATC | 3 cut(s) | 16, 113, 317 |
| Sau96I | GGNCC | 1 cut(s) | 229 |
| ScaI | AGTACT | 1 cut(s) | 293 |
| SchI | GAGTC | 1 cut(s) | 235 |
| ScrFI | CCNGG | 3 cut(s) | 29, 128, 536 |
| SduI | GDGCHC | 1 cut(s) | 484 |
| SetI | ASST | 7 cut(s) | 92, 268, 381, 395, 526, 545, 565 |
| Sfr274I | CTCGAG | 1 cut(s) | 485 |
| SinI | GGWCC | 1 cut(s) | 229 |
| SlaI | CTCGAG | 1 cut(s) | 485 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 47 |
| SmlI | CTYRAG | 1 cut(s) | 485 |
| SmoI | CTYRAG | 1 cut(s) | 485 |
| Sse9I | AATT | 1 cut(s) | 245 |
| SseBI | AGGCCT | 1 cut(s) | 466 |
| SsiI | CCGC | 8 cut(s) | 123, 135, 176, 272, 354, 399, 477, 515 |
| SspMI | CTAG | 1 cut(s) | 221 |
| StuI | AGGCCT | 1 cut(s) | 466 |
| StyD4I | CCNGG | 3 cut(s) | 27, 126, 534 |
| StyI | CCWWGG | 1 cut(s) | 393 |
| TaaI | ACNGT | 1 cut(s) | 367 |
| TaqI | TCGA | 7 cut(s) | 15, 206, 310, 320, 486, 531, 559 |
| TaqII | GACCGA | 1 cut(s) | 456 |
| TasI | AATT | 1 cut(s) | 245 |
| TatI | WGTACW | 1 cut(s) | 291 |
| TauI | GCSGC | 3 cut(s) | 179, 356, 401 |
| TspDTI | ATGAA | 1 cut(s) | 87 |
| TspGWI | ACGGA | 1 cut(s) | 475 |
| Tth111I | GACNNNGTC | 1 cut(s) | 88 |
| VpaK11BI | GGWCC | 1 cut(s) | 229 |
| XceI | RCATGY | 1 cut(s) | 413 |
| XhoI | CTCGAG | 1 cut(s) | 485 |
| XspI | CTAG | 1 cut(s) | 221 |
| ZrmI | AGTACT | 1 cut(s) | 293 |