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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 3 cut(s) | 314, 347, 932 |
| AccII | CGCG | 6 cut(s) | 8, 282, 380, 551, 1064, 1131 |
| AclWI | GGATC | 7 cut(s) | 103, 116, 207, 677, 722, 800, 1181 |
| AcoI | YGGCCR | 3 cut(s) | 135, 349, 1059 |
| AfaI | GTAC | 1 cut(s) | 717 |
| AfeI | AGCGCT | 1 cut(s) | 334 |
| AgsI | TTSAA | 3 cut(s) | 395, 857, 1214 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 432 |
| AjnI | CCWGG | 4 cut(s) | 868, 931, 1076, 1203 |
| Alw21I | GWGCWC | 2 cut(s) | 917, 952 |
| Alw26I | GTCTC | 3 cut(s) | 478, 1158, 1302 |
| AlwI | GGATC | 7 cut(s) | 103, 116, 207, 677, 722, 800, 1181 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 347 |
| Aor51HI | AGCGCT | 1 cut(s) | 334 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 113, 145 |
| AseI | ATTAAT | 1 cut(s) | 1047 |
| AspLEI | GCGC | 3 cut(s) | 10, 335, 938 |
| AspS9I | GGNCC | 7 cut(s) | 441, 781, 862, 1090, 1102, 1194, 1402 |
| AsuC2I | CCSGG | 1 cut(s) | 1240 |
| AsuHPI | GGTGA | 4 cut(s) | 385, 491, 997, 1243 |
| AsuII | TTCGAA | 1 cut(s) | 1287 |
| AvaII | GGWCC | 3 cut(s) | 441, 781, 1194 |
| BaeGI | GKGCMC | 1 cut(s) | 513 |
| BalI | TGGCCA | 1 cut(s) | 351 |
| BamHI | GGATCC | 1 cut(s) | 108 |
| BanII | GRGCYC | 6 cut(s) | 250, 288, 900, 917, 952, 1153 |
| BauI | CACGAG | 2 cut(s) | 656, 977 |
| BbsI | GAAGAC | 1 cut(s) | 374 |
| Bbv12I | GWGCWC | 2 cut(s) | 917, 952 |
| BccI | CCATC | 3 cut(s) | 47, 146, 887 |
| BceAI | ACGGC | 1 cut(s) | 1074 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 113, 147, 413, 447 |
| BciT130I | CCWGG | 4 cut(s) | 870, 933, 1078, 1205 |
| BciVI | GTATCC | 1 cut(s) | 62 |
| BcnI | CCSGG | 1 cut(s) | 1240 |
| BcoDI | GTCTC | 3 cut(s) | 478, 1158, 1302 |
| BfaI | CTAG | 3 cut(s) | 603, 740, 1265 |
| BfmI | CTRYAG | 2 cut(s) | 33, 765 |
| BfoI | RGCGCY | 1 cut(s) | 336 |
| BfuI | GTATCC | 1 cut(s) | 62 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 500 |
| Bme1390I | CCNGG | 5 cut(s) | 870, 933, 1078, 1205, 1240 |
| Bme18I | GGWCC | 3 cut(s) | 441, 781, 1194 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 432 |
| BmgT120I | GGNCC | 7 cut(s) | 441, 781, 862, 1090, 1102, 1194, 1402 |
| BmiI | GGNNCC | 6 cut(s) | 110, 864, 899, 1103, 1196, 1257 |
| BmrFI | CCNGG | 5 cut(s) | 870, 933, 1078, 1205, 1240 |
| BmsI | GCATC | 8 cut(s) | 34, 193, 547, 555, 947, 1014, 1111, 1345 |
| BpiI | GAAGAC | 1 cut(s) | 374 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 275, 307, 882, 914 |
| BpmI | CTGGAG | 1 cut(s) | 891 |
| Bpu10I | CCTNAGC | 3 cut(s) | 816, 1086, 1276 |
| Bpu14I | TTCGAA | 1 cut(s) | 1287 |
| BpuEI | CTTGAG | 6 cut(s) | 246, 489, 612, 982, 1265, 1296 |
| BpuMI | CCSGG | 1 cut(s) | 1240 |
| Bsa29I | ATCGAT | 1 cut(s) | 42 |
| BsaBI | GATNNNNATC | 1 cut(s) | 417 |
| BsaI | GGTCTC | 1 cut(s) | 478 |
| BsaJI | CCNNGG | 2 cut(s) | 513, 868 |
| BsaWI | WCCGGW | 2 cut(s) | 476, 577 |
| Bse118I | RCCGGY | 1 cut(s) | 438 |
| Bse1I | ACTGG | 3 cut(s) | 239, 352, 352 |
| Bse8I | GATNNNNATC | 1 cut(s) | 417 |
| BseBI | CCWGG | 4 cut(s) | 870, 933, 1078, 1205 |
| BseCI | ATCGAT | 1 cut(s) | 42 |
| BseDI | CCNNGG | 2 cut(s) | 513, 868 |
| BseGI | GGATG | 6 cut(s) | 58, 208, 488, 921, 938, 1378 |
| BseJI | GATNNNNATC | 1 cut(s) | 417 |
| BseMII | CTCAG | 9 cut(s) | 51, 189, 285, 807, 902, 984, 990, 1029, 1100 |
| BseNI | ACTGG | 3 cut(s) | 239, 352, 352 |
| BseRI | GAGGAG | 2 cut(s) | 213, 1145 |
| BseSI | GKGCMC | 1 cut(s) | 513 |
| BseX3I | CGGCCG | 1 cut(s) | 1059 |
| BseYI | CCCAGC | 2 cut(s) | 340, 455 |
| BsgI | GTGCAG | 2 cut(s) | 192, 621 |
| Bsh1236I | CGCG | 6 cut(s) | 8, 282, 380, 551, 1064, 1131 |
| Bsh1285I | CGRYCG | 3 cut(s) | 669, 1062, 1068 |
| BshVI | ATCGAT | 1 cut(s) | 42 |
| BsiEI | CGRYCG | 3 cut(s) | 669, 1062, 1068 |
| BsiHKAI | GWGCWC | 2 cut(s) | 917, 952 |
| BsiSI | CCGG | 6 cut(s) | 227, 439, 477, 578, 749, 1240 |
| BslFI | GGGAC | 2 cut(s) | 70, 131 |
| BsmAI | GTCTC | 3 cut(s) | 478, 1158, 1302 |
| BsmFI | GGGAC | 2 cut(s) | 70, 131 |
| Bso31I | GGTCTC | 1 cut(s) | 478 |
| Bsp119I | TTCGAA | 1 cut(s) | 1287 |
| Bsp1286I | GDGCHC | 7 cut(s) | 250, 288, 513, 900, 917, 952, 1153 |
| Bsp143I | GATC | 8 cut(s) | 16, 108, 212, 375, 682, 727, 805, 1173 |
| Bsp68I | TCGCGA | 3 cut(s) | 282, 551, 1131 |
| BspCNI | CTCAG | 9 cut(s) | 52, 190, 286, 808, 903, 985, 991, 1030, 1099 |
| BspDI | ATCGAT | 1 cut(s) | 42 |
| BspFNI | CGCG | 6 cut(s) | 8, 282, 380, 551, 1064, 1131 |
| BspLI | GGNNCC | 6 cut(s) | 110, 864, 899, 1103, 1196, 1257 |
| BspPI | GGATC | 7 cut(s) | 103, 116, 207, 677, 722, 800, 1181 |
| BspT104I | TTCGAA | 1 cut(s) | 1287 |
| BspTNI | GGTCTC | 1 cut(s) | 478 |
| BsrFI | RCCGGY | 1 cut(s) | 438 |
| BsrI | ACTGG | 3 cut(s) | 239, 352, 352 |
| BssAI | RCCGGY | 1 cut(s) | 438 |
| BssECI | CCNNGG | 2 cut(s) | 513, 868 |
| BssMI | GATC | 8 cut(s) | 16, 108, 212, 375, 682, 727, 805, 1173 |
| BssSI | CACGAG | 2 cut(s) | 656, 977 |
| Bst2BI | CACGAG | 2 cut(s) | 656, 977 |
| Bst2UI | CCWGG | 4 cut(s) | 870, 933, 1078, 1205 |
| Bst4CI | ACNGT | 3 cut(s) | 37, 373, 430 |
| Bst6I | CTCTTC | 1 cut(s) | 81 |
| BstBI | TTCGAA | 1 cut(s) | 1287 |
| BstDSI | CCRYGG | 1 cut(s) | 513 |
| BstF5I | GGATG | 6 cut(s) | 58, 208, 488, 921, 938, 1378 |
| BstFNI | CGCG | 6 cut(s) | 8, 282, 380, 551, 1064, 1131 |
| BstH2I | RGCGCY | 1 cut(s) | 336 |
| BstHHI | GCGC | 3 cut(s) | 10, 335, 938 |
| BstKTI | GATC | 8 cut(s) | 19, 111, 215, 378, 685, 730, 808, 1176 |
| BstMAI | GTCTC | 3 cut(s) | 478, 1158, 1302 |
| BstMBI | GATC | 8 cut(s) | 16, 108, 212, 375, 682, 727, 805, 1173 |
| BstMCI | CGRYCG | 3 cut(s) | 669, 1062, 1068 |
| BstNI | CCWGG | 4 cut(s) | 870, 933, 1078, 1205 |
| BstNSI | RCATGY | 1 cut(s) | 853 |
| BstSCI | CCNGG | 5 cut(s) | 868, 931, 1076, 1203, 1238 |
| BstSFI | CTRYAG | 2 cut(s) | 33, 765 |
| BstSLI | GKGCMC | 1 cut(s) | 513 |
| BstUI | CGCG | 6 cut(s) | 8, 282, 380, 551, 1064, 1131 |
| BstV2I | GAAGAC | 1 cut(s) | 374 |
| BstX2I | RGATCY | 2 cut(s) | 108, 805 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 952 |
| BstYI | RGATCY | 2 cut(s) | 108, 805 |
| BstZI | CGGCCG | 1 cut(s) | 1059 |
| Bsu15I | ATCGAT | 1 cut(s) | 42 |
| BsuI | GTATCC | 1 cut(s) | 62 |
| BsuTUI | ATCGAT | 1 cut(s) | 42 |
| BtgI | CCRYGG | 1 cut(s) | 513 |
| BtgZI | GCGATG | 2 cut(s) | 532, 570 |
| BtsCI | GGATG | 6 cut(s) | 58, 208, 488, 921, 938, 1378 |
| BtsI | GCAGTG | 1 cut(s) | 926 |
| BtsIMutI | CAGTG | 3 cut(s) | 246, 345, 926 |
| BtuMI | TCGCGA | 3 cut(s) | 282, 551, 1131 |
| CaiI | CAGNNNCTG | 1 cut(s) | 347 |
| CfoI | GCGC | 3 cut(s) | 10, 335, 938 |
| Cfr10I | RCCGGY | 1 cut(s) | 438 |
| Cfr13I | GGNCC | 7 cut(s) | 441, 781, 862, 1090, 1102, 1194, 1402 |
| ClaI | ATCGAT | 1 cut(s) | 42 |
| Csp6I | GTAC | 1 cut(s) | 716 |
| CviAII | CATG | 4 cut(s) | 323, 850, 1250, 1397 |
| CviQI | GTAC | 1 cut(s) | 716 |
| DpnI | GATC | 8 cut(s) | 18, 110, 214, 377, 684, 729, 807, 1175 |
| DpnII | GATC | 8 cut(s) | 16, 108, 212, 375, 682, 727, 805, 1173 |
| DriI | GACNNNNNGTC | 1 cut(s) | 432 |
| EaeI | YGGCCR | 3 cut(s) | 135, 349, 1059 |
| EagI | CGGCCG | 1 cut(s) | 1059 |
| Eam1104I | CTCTTC | 1 cut(s) | 81 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 432 |
| EarI | CTCTTC | 1 cut(s) | 81 |
| EciI | GGCGGA | 1 cut(s) | 481 |
| Ecl136II | GAGCTC | 2 cut(s) | 915, 950 |
| EclXI | CGGCCG | 1 cut(s) | 1059 |
| Eco24I | GRGCYC | 6 cut(s) | 250, 288, 900, 917, 952, 1153 |
| Eco31I | GGTCTC | 1 cut(s) | 478 |
| Eco47I | GGWCC | 3 cut(s) | 441, 781, 1194 |
| Eco47III | AGCGCT | 1 cut(s) | 334 |
| Eco52I | CGGCCG | 1 cut(s) | 1059 |
| Eco53kI | GAGCTC | 2 cut(s) | 915, 950 |
| EcoICRI | GAGCTC | 2 cut(s) | 915, 950 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1102 |
| EcoRII | CCWGG | 4 cut(s) | 868, 931, 1076, 1203 |
| EcoT38I | GRGCYC | 6 cut(s) | 250, 288, 900, 917, 952, 1153 |
| FaeI | CATG | 4 cut(s) | 326, 853, 1253, 1400 |
| FaiI | YATR | 8 cut(s) | 324, 590, 767, 777, 851, 878, 1251, 1398 |
| FaqI | GGGAC | 2 cut(s) | 70, 131 |
| FatI | CATG | 4 cut(s) | 322, 849, 1249, 1396 |
| FauI | CCCGC | 2 cut(s) | 108, 1393 |
| FokI | GGATG | 6 cut(s) | 65, 215, 475, 908, 925, 1385 |
| FriOI | GRGCYC | 6 cut(s) | 250, 288, 900, 917, 952, 1153 |
| FspBI | CTAG | 3 cut(s) | 603, 740, 1265 |
| GlaI | GCGC | 3 cut(s) | 9, 334, 937 |
| GsaI | CCCAGC | 2 cut(s) | 344, 459 |
| GsuI | CTGGAG | 1 cut(s) | 891 |
| HaeII | RGCGCY | 1 cut(s) | 336 |
| HapII | CCGG | 6 cut(s) | 227, 439, 477, 578, 749, 1240 |
| HhaI | GCGC | 3 cut(s) | 10, 335, 938 |
| Hin1II | CATG | 4 cut(s) | 326, 853, 1253, 1400 |
| Hin6I | GCGC | 3 cut(s) | 8, 333, 936 |
| HinP1I | GCGC | 3 cut(s) | 8, 333, 936 |
| HinfI | GANTC | 5 cut(s) | 259, 383, 398, 518, 676 |
| HpaII | CCGG | 6 cut(s) | 227, 439, 477, 578, 749, 1240 |
| HphI | GGTGA | 4 cut(s) | 385, 491, 997, 1243 |
| Hpy166II | GTNNAC | 2 cut(s) | 784, 1005 |
| Hpy188I | TCNGA | 9 cut(s) | 146, 199, 258, 295, 409, 666, 912, 919, 1194 |
| Hpy8I | GTNNAC | 2 cut(s) | 784, 1005 |
| Hpy99I | CGWCG | 3 cut(s) | 125, 438, 728 |
| HpyAV | CCTTC | 7 cut(s) | 59, 455, 476, 834, 917, 1043, 1294 |
| HpyCH4III | ACNGT | 3 cut(s) | 37, 373, 430 |
| HpyCH4V | TGCA | 6 cut(s) | 209, 326, 560, 583, 638, 1027 |
| Hsp92II | CATG | 4 cut(s) | 326, 853, 1253, 1400 |
| HspAI | GCGC | 3 cut(s) | 8, 333, 936 |
| Kzo9I | GATC | 8 cut(s) | 16, 108, 212, 375, 682, 727, 805, 1173 |
| LmnI | GCTCC | 3 cut(s) | 903, 920, 1339 |
| LweI | GCATC | 8 cut(s) | 34, 193, 547, 555, 947, 1014, 1111, 1345 |
| MaeI | CTAG | 3 cut(s) | 603, 740, 1265 |
| MaeIII | GTNAC | 2 cut(s) | 974, 1231 |
| MalI | GATC | 8 cut(s) | 18, 110, 214, 377, 684, 729, 807, 1175 |
| MboI | GATC | 8 cut(s) | 16, 108, 212, 375, 682, 727, 805, 1173 |
| MboII | GAAGA | 9 cut(s) | 11, 98, 133, 379, 393, 407, 459, 644, 1181 |
| MfeI | CAATTG | 3 cut(s) | 100, 563, 1220 |
| MflI | RGATCY | 2 cut(s) | 108, 805 |
| MhlI | GDGCHC | 7 cut(s) | 250, 288, 513, 900, 917, 952, 1153 |
| MlsI | TGGCCA | 1 cut(s) | 351 |
| MluCI | AATT | 6 cut(s) | 100, 563, 573, 609, 648, 1220 |
| MluNI | TGGCCA | 1 cut(s) | 351 |
| MlyI | GAGTC | 3 cut(s) | 253, 392, 685 |
| MmeI | TCCRAC | 3 cut(s) | 689, 925, 942 |
| Mox20I | TGGCCA | 1 cut(s) | 351 |
| MscI | TGGCCA | 1 cut(s) | 351 |
| MseI | TTAA | 1 cut(s) | 1047 |
| MslI | CAYNNNNRTG | 1 cut(s) | 179 |
| Msp20I | TGGCCA | 1 cut(s) | 351 |
| MspA1I | CMGCKG | 2 cut(s) | 115, 811 |
| MspI | CCGG | 6 cut(s) | 227, 439, 477, 578, 749, 1240 |
| MspR9I | CCNGG | 5 cut(s) | 870, 933, 1078, 1205, 1240 |
| MunI | CAATTG | 3 cut(s) | 100, 563, 1220 |
| MvaI | CCWGG | 4 cut(s) | 870, 933, 1078, 1205 |
| MvnI | CGCG | 6 cut(s) | 8, 282, 380, 551, 1064, 1131 |
| NciI | CCSGG | 1 cut(s) | 1240 |
| NdeII | GATC | 8 cut(s) | 16, 108, 212, 375, 682, 727, 805, 1173 |
| NlaIII | CATG | 4 cut(s) | 326, 853, 1253, 1400 |
| NlaIV | GGNNCC | 6 cut(s) | 110, 864, 899, 1103, 1196, 1257 |
| NmuCI | GTSAC | 2 cut(s) | 974, 1231 |
| NruI | TCGCGA | 3 cut(s) | 282, 551, 1131 |
| NspI | RCATGY | 1 cut(s) | 853 |
| NspV | TTCGAA | 1 cut(s) | 1287 |
| PaeI | GCATGC | 1 cut(s) | 853 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 12, 279 |
| PfeI | GAWTC | 2 cut(s) | 398, 518 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 314, 347, 932 |
| PfoI | TCCNGGA | 1 cut(s) | 1203 |
| PleI | GAGTC | 3 cut(s) | 253, 391, 684 |
| PpsI | GAGTC | 3 cut(s) | 253, 391, 684 |
| PshBI | ATTAAT | 1 cut(s) | 1047 |
| Psp124BI | GAGCTC | 2 cut(s) | 917, 952 |
| Psp6I | CCWGG | 4 cut(s) | 868, 931, 1076, 1203 |
| PspFI | CCCAGC | 2 cut(s) | 340, 455 |
| PspGI | CCWGG | 4 cut(s) | 868, 931, 1076, 1203 |
| PspN4I | GGNNCC | 6 cut(s) | 110, 864, 899, 1103, 1196, 1257 |
| PspPI | GGNCC | 7 cut(s) | 441, 781, 862, 1090, 1102, 1194, 1402 |
| PstNI | CAGNNNCTG | 1 cut(s) | 347 |
| PsuI | RGATCY | 2 cut(s) | 108, 805 |
| RruI | TCGCGA | 3 cut(s) | 282, 551, 1131 |
| RsaI | GTAC | 1 cut(s) | 717 |
| RsaNI | GTAC | 1 cut(s) | 716 |
| RseI | CAYNNNNRTG | 1 cut(s) | 179 |
| SacI | GAGCTC | 2 cut(s) | 917, 952 |
| SaqAI | TTAA | 1 cut(s) | 1047 |
| Sau3AI | GATC | 8 cut(s) | 16, 108, 212, 375, 682, 727, 805, 1173 |
| Sau96I | GGNCC | 7 cut(s) | 441, 781, 862, 1090, 1102, 1194, 1402 |
| SchI | GAGTC | 3 cut(s) | 253, 392, 685 |
| ScrFI | CCNGG | 5 cut(s) | 870, 933, 1078, 1205, 1240 |
| SduI | GDGCHC | 7 cut(s) | 250, 288, 513, 900, 917, 952, 1153 |
| SfaNI | GCATC | 8 cut(s) | 34, 193, 547, 555, 947, 1014, 1111, 1345 |
| SfcI | CTRYAG | 2 cut(s) | 33, 765 |
| SfuI | TTCGAA | 1 cut(s) | 1287 |
| SinI | GGWCC | 3 cut(s) | 441, 781, 1194 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 179 |
| SmlI | CTYRAG | 6 cut(s) | 261, 504, 627, 961, 1244, 1311 |
| SmoI | CTYRAG | 6 cut(s) | 261, 504, 627, 961, 1244, 1311 |
| SphI | GCATGC | 1 cut(s) | 853 |
| Sse9I | AATT | 6 cut(s) | 100, 563, 573, 609, 648, 1220 |
| SspMI | CTAG | 3 cut(s) | 603, 740, 1265 |
| SstI | GAGCTC | 2 cut(s) | 917, 952 |
| StyD4I | CCNGG | 5 cut(s) | 868, 931, 1076, 1203, 1238 |
| TaaI | ACNGT | 3 cut(s) | 37, 373, 430 |
| TaqI | TCGA | 7 cut(s) | 15, 42, 177, 726, 744, 1287, 1320 |
| TaqII | GACCGA | 1 cut(s) | 460 |
| TasI | AATT | 6 cut(s) | 100, 563, 573, 609, 648, 1220 |
| TauI | GCSGC | 3 cut(s) | 137, 1064, 1283 |
| TfiI | GAWTC | 2 cut(s) | 398, 518 |
| Tru1I | TTAA | 1 cut(s) | 1047 |
| Tru9I | TTAA | 1 cut(s) | 1047 |
| TscAI | CASTG | 3 cut(s) | 246, 352, 933 |
| TseFI | GTSAC | 2 cut(s) | 974, 1231 |
| Tsp45I | GTSAC | 2 cut(s) | 974, 1231 |
| TspDTI | ATGAA | 4 cut(s) | 90, 633, 1065, 1389 |
| TspGWI | ACGGA | 4 cut(s) | 85, 530, 962, 1355 |
| TspRI | CASTG | 3 cut(s) | 246, 352, 933 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 314, 347, 932 |
| VpaK11BI | GGWCC | 3 cut(s) | 441, 781, 1194 |
| VspI | ATTAAT | 1 cut(s) | 1047 |
| XceI | RCATGY | 1 cut(s) | 853 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 949, 1366 |
| XspI | CTAG | 3 cut(s) | 603, 740, 1265 |