Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 178 |
| AccII | CGCG | 4 cut(s) | 206, 250, 252, 513 |
| AclWI | GGATC | 2 cut(s) | 59, 221 |
| AcoI | YGGCCR | 3 cut(s) | 273, 328, 403 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 254, 481 |
| AjnI | CCWGG | 1 cut(s) | 80 |
| AluBI | AGCT | 2 cut(s) | 157, 545 |
| AluI | AGCT | 2 cut(s) | 157, 545 |
| Alw21I | GWGCWC | 3 cut(s) | 159, 268, 508 |
| Alw44I | GTGCAC | 1 cut(s) | 264 |
| AlwI | GGATC | 2 cut(s) | 59, 221 |
| AoxI | GGCC | 5 cut(s) | 134, 273, 328, 370, 403 |
| ApaLI | GTGCAC | 1 cut(s) | 264 |
| AspLEI | GCGC | 1 cut(s) | 252 |
| AspS9I | GGNCC | 1 cut(s) | 135 |
| AsuHPI | GGTGA | 4 cut(s) | 208, 292, 352, 358 |
| BaeGI | GKGCMC | 2 cut(s) | 184, 268 |
| BalI | TGGCCA | 3 cut(s) | 275, 330, 405 |
| BanII | GRGCYC | 2 cut(s) | 105, 159 |
| BauI | CACGAG | 1 cut(s) | 183 |
| Bbv12I | GWGCWC | 3 cut(s) | 159, 268, 508 |
| BccI | CCATC | 3 cut(s) | 371, 386, 425 |
| BciT130I | CCWGG | 1 cut(s) | 82 |
| BclI | TGATCA | 1 cut(s) | 28 |
| BfaI | CTAG | 2 cut(s) | 534, 542 |
| BfmI | CTRYAG | 1 cut(s) | 460 |
| BglII | AGATCT | 1 cut(s) | 187 |
| BisI | GCNGC | 3 cut(s) | 207, 253, 256 |
| BlsI | GCNGC | 3 cut(s) | 208, 254, 257 |
| Bme1390I | CCNGG | 1 cut(s) | 82 |
| BmgT120I | GGNCC | 1 cut(s) | 135 |
| BmiI | GGNNCC | 3 cut(s) | 6, 119, 457 |
| BmrFI | CCNGG | 1 cut(s) | 82 |
| BmsI | GCATC | 1 cut(s) | 348 |
| BpmI | CTGGAG | 2 cut(s) | 103, 124 |
| BsaAI | YACGTR | 1 cut(s) | 397 |
| BsaJI | CCNNGG | 1 cut(s) | 477 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 254, 481 |
| Bse118I | RCCGGY | 1 cut(s) | 368 |
| Bse1I | ACTGG | 2 cut(s) | 354, 521 |
| Bse3DI | GCAATG | 2 cut(s) | 151, 265 |
| BseBI | CCWGG | 1 cut(s) | 82 |
| BseDI | CCNNGG | 1 cut(s) | 477 |
| BseGI | GGATG | 1 cut(s) | 157 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 254, 481 |
| BseMI | GCAATG | 2 cut(s) | 151, 265 |
| BseNI | ACTGG | 2 cut(s) | 354, 521 |
| BseRI | GAGGAG | 1 cut(s) | 50 |
| BseSI | GKGCMC | 2 cut(s) | 184, 268 |
| Bsh1236I | CGCG | 4 cut(s) | 206, 250, 252, 513 |
| BshFI | GGCC | 5 cut(s) | 136, 275, 330, 372, 405 |
| BsiHKAI | GWGCWC | 3 cut(s) | 159, 268, 508 |
| BsiSI | CCGG | 2 cut(s) | 241, 369 |
| BslFI | GGGAC | 1 cut(s) | 502 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 254, 481 |
| BsmFI | GGGAC | 1 cut(s) | 502 |
| BsnI | GGCC | 5 cut(s) | 136, 275, 330, 372, 405 |
| Bsp1286I | GDGCHC | 5 cut(s) | 105, 159, 184, 268, 508 |
| Bsp143I | GATC | 4 cut(s) | 28, 64, 187, 213 |
| BspANI | GGCC | 5 cut(s) | 136, 275, 330, 372, 405 |
| BspFNI | CGCG | 4 cut(s) | 206, 250, 252, 513 |
| BspLI | GGNNCC | 3 cut(s) | 6, 119, 457 |
| BspPI | GGATC | 2 cut(s) | 59, 221 |
| BspQI | GCTCTTC | 1 cut(s) | 168 |
| BsrBI | CCGCTC | 1 cut(s) | 178 |
| BsrDI | GCAATG | 2 cut(s) | 151, 265 |
| BsrFI | RCCGGY | 1 cut(s) | 368 |
| BsrI | ACTGG | 2 cut(s) | 354, 521 |
| BssAI | RCCGGY | 1 cut(s) | 368 |
| BssECI | CCNNGG | 1 cut(s) | 477 |
| BssMI | GATC | 4 cut(s) | 28, 64, 187, 213 |
| BssSI | CACGAG | 1 cut(s) | 183 |
| Bst2BI | CACGAG | 1 cut(s) | 183 |
| Bst2UI | CCWGG | 1 cut(s) | 82 |
| Bst4CI | ACNGT | 2 cut(s) | 464, 481 |
| Bst6I | CTCTTC | 1 cut(s) | 168 |
| BstBAI | YACGTR | 1 cut(s) | 397 |
| BstC8I | GCNNGC | 2 cut(s) | 180, 196 |
| BstDEI | CTNAG | 1 cut(s) | 12 |
| BstDSI | CCRYGG | 1 cut(s) | 477 |
| BstF5I | GGATG | 1 cut(s) | 157 |
| BstFNI | CGCG | 4 cut(s) | 206, 250, 252, 513 |
| BstHHI | GCGC | 1 cut(s) | 252 |
| BstKTI | GATC | 4 cut(s) | 31, 67, 190, 216 |
| BstMBI | GATC | 4 cut(s) | 28, 64, 187, 213 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 100, 272, 336, 397 |
| BstNI | CCWGG | 1 cut(s) | 82 |
| BstSCI | CCNGG | 1 cut(s) | 80 |
| BstSFI | CTRYAG | 1 cut(s) | 460 |
| BstSLI | GKGCMC | 2 cut(s) | 184, 268 |
| BstUI | CGCG | 4 cut(s) | 206, 250, 252, 513 |
| BstX2I | RGATCY | 1 cut(s) | 187 |
| BstYI | RGATCY | 1 cut(s) | 187 |
| BsuRI | GGCC | 5 cut(s) | 136, 275, 330, 372, 405 |
| BtgI | CCRYGG | 1 cut(s) | 477 |
| BtsCI | GGATG | 1 cut(s) | 157 |
| BtsIMutI | CAGTG | 1 cut(s) | 469 |
| Cac8I | GCNNGC | 2 cut(s) | 180, 196 |
| CfoI | GCGC | 1 cut(s) | 252 |
| Cfr10I | RCCGGY | 1 cut(s) | 368 |
| Cfr13I | GGNCC | 1 cut(s) | 135 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 466, 501 |
| CviAII | CATG | 2 cut(s) | 401, 436 |
| DdeI | CTNAG | 1 cut(s) | 12 |
| DpnI | GATC | 4 cut(s) | 30, 66, 189, 215 |
| DpnII | GATC | 4 cut(s) | 28, 64, 187, 213 |
| EaeI | YGGCCR | 3 cut(s) | 273, 328, 403 |
| Eam1104I | CTCTTC | 1 cut(s) | 168 |
| EarI | CTCTTC | 1 cut(s) | 168 |
| Ecl136II | GAGCTC | 1 cut(s) | 157 |
| Eco24I | GRGCYC | 2 cut(s) | 105, 159 |
| Eco32I | GATATC | 1 cut(s) | 355 |
| Eco53kI | GAGCTC | 1 cut(s) | 157 |
| EcoICRI | GAGCTC | 1 cut(s) | 157 |
| EcoRII | CCWGG | 1 cut(s) | 80 |
| EcoRV | GATATC | 1 cut(s) | 355 |
| EcoT38I | GRGCYC | 2 cut(s) | 105, 159 |
| FaeI | CATG | 2 cut(s) | 404, 439 |
| FaiI | YATR | 4 cut(s) | 284, 402, 437, 472 |
| FaqI | GGGAC | 1 cut(s) | 502 |
| FatI | CATG | 2 cut(s) | 400, 435 |
| FauI | CCCGC | 4 cut(s) | 16, 171, 202, 311 |
| FbaI | TGATCA | 1 cut(s) | 28 |
| Fnu4HI | GCNGC | 3 cut(s) | 207, 253, 256 |
| FokI | GGATG | 1 cut(s) | 164 |
| FriOI | GRGCYC | 2 cut(s) | 105, 159 |
| Fsp4HI | GCNGC | 3 cut(s) | 207, 253, 256 |
| FspBI | CTAG | 2 cut(s) | 534, 542 |
| GlaI | GCGC | 1 cut(s) | 251 |
| GluI | GCNGC | 3 cut(s) | 207, 253, 256 |
| GsuI | CTGGAG | 2 cut(s) | 103, 124 |
| HaeIII | GGCC | 5 cut(s) | 136, 275, 330, 372, 405 |
| HapII | CCGG | 2 cut(s) | 241, 369 |
| HhaI | GCGC | 1 cut(s) | 252 |
| Hin1II | CATG | 2 cut(s) | 404, 439 |
| Hin6I | GCGC | 1 cut(s) | 250 |
| HinP1I | GCGC | 1 cut(s) | 250 |
| HinfI | GANTC | 1 cut(s) | 413 |
| HpaII | CCGG | 2 cut(s) | 241, 369 |
| HphI | GGTGA | 4 cut(s) | 208, 292, 352, 358 |
| Hpy166II | GTNNAC | 1 cut(s) | 266 |
| Hpy188I | TCNGA | 4 cut(s) | 64, 72, 323, 422 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 292, 534 |
| Hpy8I | GTNNAC | 1 cut(s) | 266 |
| Hpy99I | CGWCG | 1 cut(s) | 386 |
| HpyAV | CCTTC | 1 cut(s) | 67 |
| HpyCH4III | ACNGT | 2 cut(s) | 464, 481 |
| HpyCH4IV | ACGT | 1 cut(s) | 396 |
| HpyCH4V | TGCA | 3 cut(s) | 266, 400, 499 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 100, 272, 336, 397 |
| HpyF3I | CTNAG | 1 cut(s) | 12 |
| HpySE526I | ACGT | 1 cut(s) | 396 |
| Hsp92II | CATG | 2 cut(s) | 404, 439 |
| HspAI | GCGC | 1 cut(s) | 250 |
| Ksp22I | TGATCA | 1 cut(s) | 28 |
| Kzo9I | GATC | 4 cut(s) | 28, 64, 187, 213 |
| LguI | GCTCTTC | 1 cut(s) | 168 |
| LmnI | GCTCC | 3 cut(s) | 10, 117, 503 |
| LweI | GCATC | 1 cut(s) | 348 |
| MaeI | CTAG | 2 cut(s) | 534, 542 |
| MaeII | ACGT | 1 cut(s) | 396 |
| MalI | GATC | 4 cut(s) | 30, 66, 189, 215 |
| MbiI | CCGCTC | 1 cut(s) | 178 |
| MboI | GATC | 4 cut(s) | 28, 64, 187, 213 |
| MboII | GAAGA | 1 cut(s) | 185 |
| MflI | RGATCY | 1 cut(s) | 187 |
| MhlI | GDGCHC | 5 cut(s) | 105, 159, 184, 268, 508 |
| MlsI | TGGCCA | 3 cut(s) | 275, 330, 405 |
| MluCI | AATT | 2 cut(s) | 229, 407 |
| MluNI | TGGCCA | 3 cut(s) | 275, 330, 405 |
| MlyI | GAGTC | 1 cut(s) | 407 |
| MnlI | CCTC | 6 cut(s) | 28, 31, 78, 148, 248, 368 |
| Mox20I | TGGCCA | 3 cut(s) | 275, 330, 405 |
| MscI | TGGCCA | 3 cut(s) | 275, 330, 405 |
| MslI | CAYNNNNRTG | 1 cut(s) | 281 |
| Msp20I | TGGCCA | 3 cut(s) | 275, 330, 405 |
| MspA1I | CMGCKG | 1 cut(s) | 453 |
| MspI | CCGG | 2 cut(s) | 241, 369 |
| MspR9I | CCNGG | 1 cut(s) | 82 |
| MvaI | CCWGG | 1 cut(s) | 82 |
| MvnI | CGCG | 4 cut(s) | 206, 250, 252, 513 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 100, 272, 336, 397 |
| NdeII | GATC | 4 cut(s) | 28, 64, 187, 213 |
| NlaIII | CATG | 2 cut(s) | 404, 439 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 119, 457 |
| PciSI | GCTCTTC | 1 cut(s) | 168 |
| PkrI | GCNGC | 3 cut(s) | 208, 254, 257 |
| PleI | GAGTC | 1 cut(s) | 407 |
| PpsI | GAGTC | 1 cut(s) | 407 |
| Ppu21I | YACGTR | 1 cut(s) | 397 |
| Psp124BI | GAGCTC | 1 cut(s) | 159 |
| Psp6I | CCWGG | 1 cut(s) | 80 |
| PspGI | CCWGG | 1 cut(s) | 80 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 119, 457 |
| PspPI | GGNCC | 1 cut(s) | 135 |
| PsuI | RGATCY | 1 cut(s) | 187 |
| RseI | CAYNNNNRTG | 1 cut(s) | 281 |
| SacI | GAGCTC | 1 cut(s) | 159 |
| SapI | GCTCTTC | 1 cut(s) | 168 |
| SatI | GCNGC | 3 cut(s) | 207, 253, 256 |
| Sau3AI | GATC | 4 cut(s) | 28, 64, 187, 213 |
| Sau96I | GGNCC | 1 cut(s) | 135 |
| SchI | GAGTC | 1 cut(s) | 407 |
| ScrFI | CCNGG | 1 cut(s) | 82 |
| SduI | GDGCHC | 5 cut(s) | 105, 159, 184, 268, 508 |
| SetI | ASST | 6 cut(s) | 83, 131, 159, 314, 399, 547 |
| SfaNI | GCATC | 1 cut(s) | 348 |
| SfcI | CTRYAG | 1 cut(s) | 460 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 281 |
| Sse9I | AATT | 2 cut(s) | 229, 407 |
| SspMI | CTAG | 2 cut(s) | 534, 542 |
| SstI | GAGCTC | 1 cut(s) | 159 |
| StyD4I | CCNGG | 1 cut(s) | 80 |
| TaaI | ACNGT | 2 cut(s) | 464, 481 |
| TaiI | ACGT | 1 cut(s) | 399 |
| TaqI | TCGA | 2 cut(s) | 105, 381 |
| TasI | AATT | 2 cut(s) | 229, 407 |
| TauI | GCSGC | 3 cut(s) | 209, 255, 258 |
| TscAI | CASTG | 1 cut(s) | 469 |
| TspDTI | ATGAA | 1 cut(s) | 416 |
| TspGWI | ACGGA | 1 cut(s) | 130 |
| TspRI | CASTG | 1 cut(s) | 469 |
| VneI | GTGCAC | 1 cut(s) | 264 |
| XbaI | TCTAGA | 1 cut(s) | 533 |
| XspI | CTAG | 2 cut(s) | 534, 542 |