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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 265, 278, 375 |
| AccIII | TCCGGA | 1 cut(s) | 223 |
| AciI | CCGC | 7 cut(s) | 4, 265, 278, 281, 349, 373, 375 |
| AclWI | GGATC | 4 cut(s) | 292, 305, 559, 619 |
| AcoI | YGGCCR | 1 cut(s) | 433 |
| AcsI | RAATTY | 2 cut(s) | 99, 132 |
| AfaI | GTAC | 1 cut(s) | 528 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 244, 293, 385 |
| AgsI | TTSAA | 1 cut(s) | 10 |
| AjnI | CCWGG | 1 cut(s) | 418 |
| Alw26I | GTCTC | 1 cut(s) | 217 |
| AlwI | GGATC | 4 cut(s) | 292, 305, 559, 619 |
| Aor13HI | TCCGGA | 1 cut(s) | 223 |
| AoxI | GGCC | 7 cut(s) | 140, 178, 196, 346, 356, 376, 433 |
| ApoI | RAATTY | 2 cut(s) | 99, 132 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 288 |
| AspLEI | GCGC | 1 cut(s) | 270 |
| AspS9I | GGNCC | 1 cut(s) | 390 |
| AsuC2I | CCSGG | 3 cut(s) | 195, 239, 387 |
| AsuHPI | GGTGA | 2 cut(s) | 227, 583 |
| AvaII | GGWCC | 1 cut(s) | 390 |
| BamHI | GGATCC | 1 cut(s) | 297 |
| BauI | CACGAG | 1 cut(s) | 187 |
| BbsI | GAAGAC | 1 cut(s) | 462 |
| BccI | CCATC | 4 cut(s) | 221, 468, 474, 493 |
| BceAI | ACGGC | 2 cut(s) | 41, 420 |
| BciT130I | CCWGG | 1 cut(s) | 420 |
| BcnI | CCSGG | 3 cut(s) | 195, 239, 387 |
| BcoDI | GTCTC | 1 cut(s) | 217 |
| BfaI | CTAG | 1 cut(s) | 471 |
| BfoI | RGCGCY | 1 cut(s) | 271 |
| BisI | GCNGC | 4 cut(s) | 266, 279, 349, 376 |
| BlsI | GCNGC | 4 cut(s) | 267, 280, 350, 377 |
| Bme1390I | CCNGG | 4 cut(s) | 195, 239, 387, 420 |
| Bme18I | GGWCC | 1 cut(s) | 390 |
| BmgT120I | GGNCC | 1 cut(s) | 390 |
| BmiI | GGNNCC | 4 cut(s) | 285, 299, 391, 392 |
| BmrFI | CCNGG | 4 cut(s) | 195, 239, 387, 420 |
| BpiI | GAAGAC | 1 cut(s) | 462 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 431, 463 |
| BpmI | CTGGAG | 1 cut(s) | 441 |
| BpuEI | CTTGAG | 1 cut(s) | 373 |
| BpuMI | CCSGG | 3 cut(s) | 195, 239, 387 |
| BsaI | GGTCTC | 1 cut(s) | 217 |
| BsaJI | CCNNGG | 4 cut(s) | 373, 386, 418, 522 |
| BsaWI | WCCGGW | 2 cut(s) | 223, 485 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 244, 293, 385 |
| BseAI | TCCGGA | 1 cut(s) | 223 |
| BseBI | CCWGG | 1 cut(s) | 420 |
| BseDI | CCNNGG | 4 cut(s) | 373, 386, 418, 522 |
| BseGI | GGATG | 3 cut(s) | 232, 466, 570 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 244, 293, 385 |
| BseMII | CTCAG | 1 cut(s) | 30 |
| BseRI | GAGGAG | 1 cut(s) | 296 |
| BsgI | GTGCAG | 1 cut(s) | 75 |
| Bsh1236I | CGCG | 3 cut(s) | 265, 278, 375 |
| BshFI | GGCC | 7 cut(s) | 142, 180, 198, 348, 358, 378, 435 |
| BsiSI | CCGG | 5 cut(s) | 195, 224, 239, 386, 486 |
| BslFI | GGGAC | 2 cut(s) | 177, 376 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 244, 293, 385 |
| BsmAI | GTCTC | 1 cut(s) | 217 |
| BsmFI | GGGAC | 2 cut(s) | 177, 376 |
| BsnI | GGCC | 7 cut(s) | 142, 180, 198, 348, 358, 378, 435 |
| Bso31I | GGTCTC | 1 cut(s) | 217 |
| Bsp13I | TCCGGA | 1 cut(s) | 223 |
| Bsp143I | GATC | 3 cut(s) | 297, 551, 624 |
| BspACI | CCGC | 7 cut(s) | 4, 265, 278, 281, 349, 373, 375 |
| BspANI | GGCC | 7 cut(s) | 142, 180, 198, 348, 358, 378, 435 |
| BspCNI | CTCAG | 1 cut(s) | 31 |
| BspEI | TCCGGA | 1 cut(s) | 223 |
| BspFNI | CGCG | 3 cut(s) | 265, 278, 375 |
| BspLI | GGNNCC | 4 cut(s) | 285, 299, 391, 392 |
| BspPI | GGATC | 4 cut(s) | 292, 305, 559, 619 |
| BspQI | GCTCTTC | 1 cut(s) | 577 |
| BspTNI | GGTCTC | 1 cut(s) | 217 |
| BssECI | CCNNGG | 4 cut(s) | 373, 386, 418, 522 |
| BssMI | GATC | 3 cut(s) | 297, 551, 624 |
| BssSI | CACGAG | 1 cut(s) | 187 |
| Bst2BI | CACGAG | 1 cut(s) | 187 |
| Bst2UI | CCWGG | 1 cut(s) | 420 |
| Bst4CI | ACNGT | 2 cut(s) | 167, 288 |
| Bst6I | CTCTTC | 3 cut(s) | 523, 569, 577 |
| BstDEI | CTNAG | 3 cut(s) | 39, 137, 636 |
| BstDSI | CCRYGG | 1 cut(s) | 373 |
| BstF5I | GGATG | 3 cut(s) | 232, 466, 570 |
| BstFNI | CGCG | 3 cut(s) | 265, 278, 375 |
| BstH2I | RGCGCY | 1 cut(s) | 271 |
| BstHHI | GCGC | 1 cut(s) | 270 |
| BstKTI | GATC | 3 cut(s) | 300, 554, 627 |
| BstMAI | GTCTC | 1 cut(s) | 217 |
| BstMBI | GATC | 3 cut(s) | 297, 551, 624 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 44 |
| BstNI | CCWGG | 1 cut(s) | 420 |
| BstSCI | CCNGG | 4 cut(s) | 193, 237, 385, 418 |
| BstUI | CGCG | 3 cut(s) | 265, 278, 375 |
| BstV2I | GAAGAC | 1 cut(s) | 462 |
| BstX2I | RGATCY | 2 cut(s) | 297, 624 |
| BstYI | RGATCY | 2 cut(s) | 297, 624 |
| BsuRI | GGCC | 7 cut(s) | 142, 180, 198, 348, 358, 378, 435 |
| BtgI | CCRYGG | 1 cut(s) | 373 |
| BtgZI | GCGATG | 1 cut(s) | 512 |
| BtsCI | GGATG | 3 cut(s) | 232, 466, 570 |
| BtsI | GCAGTG | 1 cut(s) | 546 |
| BtsIMutI | CAGTG | 1 cut(s) | 546 |
| CfoI | GCGC | 1 cut(s) | 270 |
| Cfr13I | GGNCC | 1 cut(s) | 390 |
| Cfr42I | CCGCGG | 1 cut(s) | 376 |
| Csp6I | GTAC | 1 cut(s) | 527 |
| CviAII | CATG | 1 cut(s) | 202 |
| CviQI | GTAC | 1 cut(s) | 527 |
| DdeI | CTNAG | 3 cut(s) | 39, 137, 636 |
| DpnI | GATC | 3 cut(s) | 299, 553, 626 |
| DpnII | GATC | 3 cut(s) | 297, 551, 624 |
| EaeI | YGGCCR | 1 cut(s) | 433 |
| Eam1104I | CTCTTC | 3 cut(s) | 523, 569, 577 |
| EarI | CTCTTC | 3 cut(s) | 523, 569, 577 |
| EciI | GGCGGA | 1 cut(s) | 296 |
| Eco147I | AGGCCT | 2 cut(s) | 142, 358 |
| Eco31I | GGTCTC | 1 cut(s) | 217 |
| Eco47I | GGWCC | 1 cut(s) | 390 |
| EcoO109I | RGGNCCY | 1 cut(s) | 390 |
| EcoRI | GAATTC | 1 cut(s) | 132 |
| EcoRII | CCWGG | 1 cut(s) | 418 |
| FaeI | CATG | 1 cut(s) | 205 |
| FaiI | YATR | 5 cut(s) | 54, 147, 177, 203, 599 |
| FaqI | GGGAC | 2 cut(s) | 177, 376 |
| FatI | CATG | 1 cut(s) | 201 |
| Fnu4HI | GCNGC | 4 cut(s) | 266, 279, 349, 376 |
| FokI | GGATG | 3 cut(s) | 239, 453, 577 |
| Fsp4HI | GCNGC | 4 cut(s) | 266, 279, 349, 376 |
| FspBI | CTAG | 1 cut(s) | 471 |
| GlaI | GCGC | 1 cut(s) | 269 |
| GluI | GCNGC | 4 cut(s) | 266, 279, 349, 376 |
| GsuI | CTGGAG | 1 cut(s) | 441 |
| HaeII | RGCGCY | 1 cut(s) | 271 |
| HaeIII | GGCC | 7 cut(s) | 142, 180, 198, 348, 358, 378, 435 |
| HapII | CCGG | 5 cut(s) | 195, 224, 239, 386, 486 |
| HhaI | GCGC | 1 cut(s) | 270 |
| Hin1II | CATG | 1 cut(s) | 205 |
| Hin6I | GCGC | 1 cut(s) | 268 |
| HinP1I | GCGC | 1 cut(s) | 268 |
| HinfI | GANTC | 3 cut(s) | 232, 440, 546 |
| HpaII | CCGG | 5 cut(s) | 195, 224, 239, 386, 486 |
| HphI | GGTGA | 2 cut(s) | 227, 583 |
| Hpy188I | TCNGA | 3 cut(s) | 79, 551, 629 |
| Hpy188III | TCNNGA | 6 cut(s) | 10, 216, 224, 393, 452, 555 |
| Hpy99I | CGWCG | 1 cut(s) | 27 |
| HpyAV | CCTTC | 6 cut(s) | 42, 330, 338, 483, 521, 554 |
| HpyCH4III | ACNGT | 2 cut(s) | 167, 288 |
| HpyCH4V | TGCA | 1 cut(s) | 92 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 44 |
| HpyF3I | CTNAG | 3 cut(s) | 39, 137, 636 |
| Hsp92II | CATG | 1 cut(s) | 205 |
| HspAI | GCGC | 1 cut(s) | 268 |
| KflI | GGGWCCC | 1 cut(s) | 390 |
| Kpn2I | TCCGGA | 1 cut(s) | 223 |
| KspI | CCGCGG | 1 cut(s) | 376 |
| Kzo9I | GATC | 3 cut(s) | 297, 551, 624 |
| LguI | GCTCTTC | 1 cut(s) | 577 |
| LmnI | GCTCC | 1 cut(s) | 323 |
| LpnPI | CCDG | 9 cut(s) | 208, 237, 252, 312, 399, 405, 432, 499, 625 |
| MaeI | CTAG | 1 cut(s) | 471 |
| MaeIII | GTNAC | 1 cut(s) | 441 |
| MalI | GATC | 3 cut(s) | 299, 553, 626 |
| MboI | GATC | 3 cut(s) | 297, 551, 624 |
| MboII | GAAGA | 7 cut(s) | 80, 268, 361, 467, 510, 586, 594 |
| MflI | RGATCY | 2 cut(s) | 297, 624 |
| MluCI | AATT | 2 cut(s) | 99, 132 |
| MlyI | GAGTC | 2 cut(s) | 449, 540 |
| MmeI | TCCRAC | 1 cut(s) | 57 |
| MroI | TCCGGA | 1 cut(s) | 223 |
| MroXI | GAANNNNTTC | 1 cut(s) | 288 |
| MseI | TTAA | 1 cut(s) | 152 |
| MspA1I | CMGCKG | 1 cut(s) | 375 |
| MspI | CCGG | 5 cut(s) | 195, 224, 239, 386, 486 |
| MspR9I | CCNGG | 4 cut(s) | 195, 239, 387, 420 |
| MvaI | CCWGG | 1 cut(s) | 420 |
| MvnI | CGCG | 3 cut(s) | 265, 278, 375 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 44 |
| NciI | CCSGG | 3 cut(s) | 195, 239, 387 |
| NdeII | GATC | 3 cut(s) | 297, 551, 624 |
| NlaIII | CATG | 1 cut(s) | 205 |
| NlaIV | GGNNCC | 4 cut(s) | 285, 299, 391, 392 |
| NmuCI | GTSAC | 1 cut(s) | 441 |
| PceI | AGGCCT | 2 cut(s) | 142, 358 |
| PciSI | GCTCTTC | 1 cut(s) | 577 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 251 |
| PdmI | GAANNNNTTC | 1 cut(s) | 288 |
| PfeI | GAWTC | 1 cut(s) | 232 |
| PkrI | GCNGC | 4 cut(s) | 267, 280, 350, 377 |
| PleI | GAGTC | 2 cut(s) | 448, 540 |
| PpsI | GAGTC | 2 cut(s) | 448, 540 |
| PpuMI | RGGWCCY | 1 cut(s) | 390 |
| Psp5II | RGGWCCY | 1 cut(s) | 390 |
| Psp6I | CCWGG | 1 cut(s) | 418 |
| PspGI | CCWGG | 1 cut(s) | 418 |
| PspN4I | GGNNCC | 4 cut(s) | 285, 299, 391, 392 |
| PspPI | GGNCC | 1 cut(s) | 390 |
| PspPPI | RGGWCCY | 1 cut(s) | 390 |
| PsuI | RGATCY | 2 cut(s) | 297, 624 |
| RsaI | GTAC | 1 cut(s) | 528 |
| RsaNI | GTAC | 1 cut(s) | 527 |
| SacII | CCGCGG | 1 cut(s) | 376 |
| SapI | GCTCTTC | 1 cut(s) | 577 |
| SaqAI | TTAA | 1 cut(s) | 152 |
| SatI | GCNGC | 4 cut(s) | 266, 279, 349, 376 |
| Sau3AI | GATC | 3 cut(s) | 297, 551, 624 |
| Sau96I | GGNCC | 1 cut(s) | 390 |
| SchI | GAGTC | 2 cut(s) | 449, 540 |
| ScrFI | CCNGG | 4 cut(s) | 195, 239, 387, 420 |
| SetI | ASST | 6 cut(s) | 34, 77, 130, 173, 385, 427 |
| Sfr303I | CCGCGG | 1 cut(s) | 376 |
| SgrBI | CCGCGG | 1 cut(s) | 376 |
| SinI | GGWCC | 1 cut(s) | 390 |
| SmlI | CTYRAG | 1 cut(s) | 352 |
| SmoI | CTYRAG | 1 cut(s) | 352 |
| Sse9I | AATT | 2 cut(s) | 99, 132 |
| SseBI | AGGCCT | 2 cut(s) | 142, 358 |
| SsiI | CCGC | 7 cut(s) | 4, 265, 278, 281, 349, 373, 375 |
| SspMI | CTAG | 1 cut(s) | 471 |
| StuI | AGGCCT | 2 cut(s) | 142, 358 |
| StyD4I | CCNGG | 4 cut(s) | 193, 237, 385, 418 |
| TaaI | ACNGT | 2 cut(s) | 167, 288 |
| TaqI | TCGA | 6 cut(s) | 130, 217, 292, 309, 453, 554 |
| TaqII | GACCGA | 1 cut(s) | 268 |
| TasI | AATT | 2 cut(s) | 99, 132 |
| TauI | GCSGC | 4 cut(s) | 268, 281, 351, 378 |
| TfiI | GAWTC | 1 cut(s) | 232 |
| Tru1I | TTAA | 1 cut(s) | 152 |
| Tru9I | TTAA | 1 cut(s) | 152 |
| TscAI | CASTG | 1 cut(s) | 546 |
| TseFI | GTSAC | 1 cut(s) | 441 |
| Tsp45I | GTSAC | 1 cut(s) | 441 |
| TspRI | CASTG | 1 cut(s) | 546 |
| VpaK11BI | GGWCC | 1 cut(s) | 390 |
| XapI | RAATTY | 2 cut(s) | 99, 132 |
| XmnI | GAANNNNTTC | 1 cut(s) | 288 |
| XspI | CTAG | 1 cut(s) | 471 |