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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 314 |
| Acc65I | GGTACC | 1 cut(s) | 283 |
| AccB1I | GGYRCC | 1 cut(s) | 283 |
| AccI | GTMKAC | 1 cut(s) | 382 |
| AccII | CGCG | 3 cut(s) | 13, 163, 183 |
| AccIII | TCCGGA | 1 cut(s) | 204 |
| AciI | CCGC | 7 cut(s) | 11, 161, 181, 213, 259, 357, 401 |
| AclWI | GGATC | 1 cut(s) | 138 |
| AfaI | GTAC | 4 cut(s) | 24, 62, 200, 285 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 346, 395 |
| AgeI | ACCGGT | 1 cut(s) | 286 |
| AluBI | AGCT | 1 cut(s) | 235 |
| AluI | AGCT | 1 cut(s) | 235 |
| Alw21I | GWGCWC | 1 cut(s) | 237 |
| Alw26I | GTCTC | 1 cut(s) | 193 |
| AlwI | GGATC | 1 cut(s) | 138 |
| Aor13HI | TCCGGA | 1 cut(s) | 204 |
| AoxI | GGCC | 3 cut(s) | 268, 348, 397 |
| ApaI | GGGCCC | 1 cut(s) | 401 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 321, 353 |
| AsiGI | ACCGGT | 1 cut(s) | 286 |
| Asp718I | GGTACC | 1 cut(s) | 283 |
| AspLEI | GCGC | 2 cut(s) | 165, 185 |
| AspS9I | GGNCC | 5 cut(s) | 289, 337, 349, 397, 398 |
| AsuC2I | CCSGG | 5 cut(s) | 139, 171, 306, 324, 378 |
| AvaII | GGWCC | 2 cut(s) | 289, 337 |
| BaeGI | GKGCMC | 1 cut(s) | 401 |
| BanI | GGYRCC | 1 cut(s) | 283 |
| BanII | GRGCYC | 2 cut(s) | 237, 401 |
| Bbv12I | GWGCWC | 1 cut(s) | 237 |
| BceAI | ACGGC | 1 cut(s) | 170 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 221, 255 |
| BcnI | CCSGG | 5 cut(s) | 139, 171, 306, 324, 378 |
| BcoDI | GTCTC | 1 cut(s) | 193 |
| BfaI | CTAG | 1 cut(s) | 68 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 267 |
| BisI | GCNGC | 3 cut(s) | 11, 181, 213 |
| BlsI | GCNGC | 3 cut(s) | 12, 182, 214 |
| BmcAI | AGTACT | 1 cut(s) | 24 |
| Bme1390I | CCNGG | 5 cut(s) | 139, 171, 306, 324, 378 |
| Bme18I | GGWCC | 2 cut(s) | 289, 337 |
| BmgT120I | GGNCC | 5 cut(s) | 289, 337, 349, 397, 398 |
| BmiI | GGNNCC | 4 cut(s) | 285, 291, 351, 399 |
| BmrFI | CCNGG | 5 cut(s) | 139, 171, 306, 324, 378 |
| BmsI | GCATC | 1 cut(s) | 291 |
| BpuMI | CCSGG | 5 cut(s) | 139, 171, 306, 324, 378 |
| BsaJI | CCNNGG | 2 cut(s) | 137, 216 |
| BsaWI | WCCGGW | 2 cut(s) | 204, 286 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 346, 395 |
| Bse118I | RCCGGY | 1 cut(s) | 286 |
| BseAI | TCCGGA | 1 cut(s) | 204 |
| BseDI | CCNNGG | 2 cut(s) | 137, 216 |
| BseGI | GGATG | 1 cut(s) | 201 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 346, 395 |
| BseSI | GKGCMC | 1 cut(s) | 401 |
| Bsh1236I | CGCG | 3 cut(s) | 13, 163, 183 |
| Bsh1285I | CGRYCG | 1 cut(s) | 161 |
| BshFI | GGCC | 3 cut(s) | 270, 350, 399 |
| BshNI | GGYRCC | 1 cut(s) | 283 |
| BshTI | ACCGGT | 1 cut(s) | 286 |
| BsiEI | CGRYCG | 1 cut(s) | 161 |
| BsiHKAI | GWGCWC | 1 cut(s) | 237 |
| BsiSI | CCGG | 8 cut(s) | 139, 171, 205, 287, 306, 324, 347, 377 |
| BslFI | GGGAC | 1 cut(s) | 275 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 346, 395 |
| BsmAI | GTCTC | 1 cut(s) | 193 |
| BsmBI | CGTCTC | 1 cut(s) | 193 |
| BsmFI | GGGAC | 1 cut(s) | 275 |
| BsmI | GAATGC | 1 cut(s) | 50 |
| BsnI | GGCC | 3 cut(s) | 270, 350, 399 |
| Bsp120I | GGGCCC | 1 cut(s) | 397 |
| Bsp1286I | GDGCHC | 2 cut(s) | 237, 401 |
| Bsp13I | TCCGGA | 1 cut(s) | 204 |
| Bsp143I | GATC | 1 cut(s) | 143 |
| BspACI | CCGC | 7 cut(s) | 11, 161, 181, 213, 259, 357, 401 |
| BspANI | GGCC | 3 cut(s) | 270, 350, 399 |
| BspEI | TCCGGA | 1 cut(s) | 204 |
| BspFNI | CGCG | 3 cut(s) | 13, 163, 183 |
| BspLI | GGNNCC | 4 cut(s) | 285, 291, 351, 399 |
| BspPI | GGATC | 1 cut(s) | 138 |
| BspT107I | GGYRCC | 1 cut(s) | 283 |
| BsrFI | RCCGGY | 1 cut(s) | 286 |
| BssAI | RCCGGY | 1 cut(s) | 286 |
| BssECI | CCNNGG | 2 cut(s) | 137, 216 |
| BssMI | GATC | 1 cut(s) | 143 |
| Bst4CI | ACNGT | 1 cut(s) | 86 |
| BstC8I | GCNNGC | 3 cut(s) | 167, 259, 401 |
| BstF5I | GGATG | 1 cut(s) | 201 |
| BstFNI | CGCG | 3 cut(s) | 13, 163, 183 |
| BstHHI | GCGC | 2 cut(s) | 165, 185 |
| BstKTI | GATC | 1 cut(s) | 146 |
| BstMAI | GTCTC | 1 cut(s) | 193 |
| BstMBI | GATC | 1 cut(s) | 143 |
| BstMCI | CGRYCG | 1 cut(s) | 161 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 148, 171, 180, 267, 356 |
| BstNSI | RCATGY | 1 cut(s) | 79 |
| BstSCI | CCNGG | 5 cut(s) | 137, 169, 304, 322, 376 |
| BstSLI | GKGCMC | 1 cut(s) | 401 |
| BstUI | CGCG | 3 cut(s) | 13, 163, 183 |
| BsuRI | GGCC | 3 cut(s) | 270, 350, 399 |
| BtsCI | GGATG | 1 cut(s) | 201 |
| Cac8I | GCNNGC | 3 cut(s) | 167, 259, 401 |
| CfoI | GCGC | 2 cut(s) | 165, 185 |
| Cfr10I | RCCGGY | 1 cut(s) | 286 |
| Cfr13I | GGNCC | 5 cut(s) | 289, 337, 349, 397, 398 |
| Csp6I | GTAC | 4 cut(s) | 23, 61, 199, 284 |
| CspAI | ACCGGT | 1 cut(s) | 286 |
| CviAII | CATG | 1 cut(s) | 76 |
| CviJI | RGCY | 5 cut(s) | 130, 235, 270, 350, 399 |
| CviKI_1 | RGCY | 5 cut(s) | 130, 235, 270, 350, 399 |
| CviQI | GTAC | 4 cut(s) | 23, 61, 199, 284 |
| DpnI | GATC | 1 cut(s) | 145 |
| DpnII | GATC | 1 cut(s) | 143 |
| Ecl136II | GAGCTC | 1 cut(s) | 235 |
| Eco24I | GRGCYC | 2 cut(s) | 237, 401 |
| Eco47I | GGWCC | 2 cut(s) | 289, 337 |
| Eco53kI | GAGCTC | 1 cut(s) | 235 |
| EcoICRI | GAGCTC | 1 cut(s) | 235 |
| EcoT38I | GRGCYC | 2 cut(s) | 237, 401 |
| Esp3I | CGTCTC | 1 cut(s) | 193 |
| FaeI | CATG | 1 cut(s) | 79 |
| FaiI | YATR | 7 cut(s) | 77, 82, 127, 240, 299, 314, 368 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 96, 128 |
| FaqI | GGGAC | 1 cut(s) | 275 |
| FatI | CATG | 1 cut(s) | 75 |
| FauI | CCCGC | 2 cut(s) | 266, 408 |
| FblI | GTMKAC | 1 cut(s) | 382 |
| Fnu4HI | GCNGC | 3 cut(s) | 11, 181, 213 |
| FokI | GGATG | 1 cut(s) | 188 |
| FriOI | GRGCYC | 2 cut(s) | 237, 401 |
| Fsp4HI | GCNGC | 3 cut(s) | 11, 181, 213 |
| FspBI | CTAG | 1 cut(s) | 68 |
| GlaI | GCGC | 2 cut(s) | 164, 184 |
| GluI | GCNGC | 3 cut(s) | 11, 181, 213 |
| HaeIII | GGCC | 3 cut(s) | 270, 350, 399 |
| HapII | CCGG | 8 cut(s) | 139, 171, 205, 287, 306, 324, 347, 377 |
| HhaI | GCGC | 2 cut(s) | 165, 185 |
| Hin1II | CATG | 1 cut(s) | 79 |
| Hin6I | GCGC | 2 cut(s) | 163, 183 |
| HinP1I | GCGC | 2 cut(s) | 163, 183 |
| HincII | GTYRAC | 1 cut(s) | 383 |
| HindII | GTYRAC | 1 cut(s) | 383 |
| HinfI | GANTC | 2 cut(s) | 107, 332 |
| HpaII | CCGG | 8 cut(s) | 139, 171, 205, 287, 306, 324, 347, 377 |
| Hpy166II | GTNNAC | 1 cut(s) | 383 |
| Hpy188III | TCNNGA | 3 cut(s) | 98, 156, 205 |
| Hpy8I | GTNNAC | 1 cut(s) | 383 |
| HpyAV | CCTTC | 1 cut(s) | 122 |
| HpyCH4III | ACNGT | 1 cut(s) | 86 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 148, 171, 180, 267, 356 |
| Hsp92II | CATG | 1 cut(s) | 79 |
| HspAI | GCGC | 2 cut(s) | 163, 183 |
| Kpn2I | TCCGGA | 1 cut(s) | 204 |
| KpnI | GGTACC | 1 cut(s) | 287 |
| Kzo9I | GATC | 1 cut(s) | 143 |
| LmnI | GCTCC | 1 cut(s) | 247 |
| LpnPI | CCDG | 8 cut(s) | 152, 184, 218, 300, 319, 337, 360, 390 |
| LweI | GCATC | 1 cut(s) | 291 |
| MaeI | CTAG | 1 cut(s) | 68 |
| MalI | GATC | 1 cut(s) | 145 |
| MboI | GATC | 1 cut(s) | 143 |
| MboII | GAAGA | 3 cut(s) | 113, 116, 341 |
| MfeI | CAATTG | 1 cut(s) | 278 |
| MhlI | GDGCHC | 2 cut(s) | 237, 401 |
| MluCI | AATT | 4 cut(s) | 93, 263, 278, 309 |
| MmeI | TCCRAC | 1 cut(s) | 364 |
| MnlI | CCTC | 5 cut(s) | 8, 144, 157, 211, 396 |
| MroI | TCCGGA | 1 cut(s) | 204 |
| MseI | TTAA | 1 cut(s) | 92 |
| MspI | CCGG | 8 cut(s) | 139, 171, 205, 287, 306, 324, 347, 377 |
| MspR9I | CCNGG | 5 cut(s) | 139, 171, 306, 324, 378 |
| MunI | CAATTG | 1 cut(s) | 278 |
| Mva1269I | GAATGC | 1 cut(s) | 50 |
| MvnI | CGCG | 3 cut(s) | 13, 163, 183 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 148, 171, 180, 267, 356 |
| NciI | CCSGG | 5 cut(s) | 139, 171, 306, 324, 378 |
| NdeII | GATC | 1 cut(s) | 143 |
| NlaIII | CATG | 1 cut(s) | 79 |
| NlaIV | GGNNCC | 4 cut(s) | 285, 291, 351, 399 |
| NmeAIII | GCCGAG | 1 cut(s) | 241 |
| NspI | RCATGY | 1 cut(s) | 79 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 388 |
| PctI | GAATGC | 1 cut(s) | 50 |
| PfeI | GAWTC | 2 cut(s) | 107, 332 |
| PinAI | ACCGGT | 1 cut(s) | 286 |
| PkrI | GCNGC | 3 cut(s) | 12, 182, 214 |
| PsiI | TTATAA | 1 cut(s) | 314 |
| Psp124BI | GAGCTC | 1 cut(s) | 237 |
| PspN4I | GGNNCC | 4 cut(s) | 285, 291, 351, 399 |
| PspOMI | GGGCCC | 1 cut(s) | 397 |
| PspPI | GGNCC | 5 cut(s) | 289, 337, 349, 397, 398 |
| RsaI | GTAC | 4 cut(s) | 24, 62, 200, 285 |
| RsaNI | GTAC | 4 cut(s) | 23, 61, 199, 284 |
| SacI | GAGCTC | 1 cut(s) | 237 |
| SalI | GTCGAC | 1 cut(s) | 381 |
| SaqAI | TTAA | 1 cut(s) | 92 |
| SatI | GCNGC | 3 cut(s) | 11, 181, 213 |
| Sau3AI | GATC | 1 cut(s) | 143 |
| Sau96I | GGNCC | 5 cut(s) | 289, 337, 349, 397, 398 |
| ScaI | AGTACT | 1 cut(s) | 24 |
| ScrFI | CCNGG | 5 cut(s) | 139, 171, 306, 324, 378 |
| SduI | GDGCHC | 2 cut(s) | 237, 401 |
| SetI | ASST | 3 cut(s) | 237, 388, 409 |
| SfaNI | GCATC | 1 cut(s) | 291 |
| SinI | GGWCC | 2 cut(s) | 289, 337 |
| Sse9I | AATT | 4 cut(s) | 93, 263, 278, 309 |
| SsiI | CCGC | 7 cut(s) | 11, 161, 181, 213, 259, 357, 401 |
| SspMI | CTAG | 1 cut(s) | 68 |
| SstI | GAGCTC | 1 cut(s) | 237 |
| StyD4I | CCNGG | 5 cut(s) | 137, 169, 304, 322, 376 |
| TaaI | ACNGT | 1 cut(s) | 86 |
| TaqI | TCGA | 2 cut(s) | 42, 382 |
| TaqII | GACCGA | 1 cut(s) | 325 |
| TasI | AATT | 4 cut(s) | 93, 263, 278, 309 |
| TatI | WGTACW | 1 cut(s) | 22 |
| TauI | GCSGC | 3 cut(s) | 13, 183, 215 |
| TfiI | GAWTC | 2 cut(s) | 107, 332 |
| Tru1I | TTAA | 1 cut(s) | 92 |
| Tru9I | TTAA | 1 cut(s) | 92 |
| TspGWI | ACGGA | 1 cut(s) | 48 |
| VpaK11BI | GGWCC | 2 cut(s) | 289, 337 |
| XceI | RCATGY | 1 cut(s) | 79 |
| XmiI | GTMKAC | 1 cut(s) | 382 |
| XspI | CTAG | 1 cut(s) | 68 |
| ZrmI | AGTACT | 1 cut(s) | 24 |