Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2712 |
| AatII | GACGTC | 1 cut(s) | 2412 |
| Acc36I | ACCTGC | 3 cut(s) | 599, 2488, 2872 |
| Acc65I | GGTACC | 1 cut(s) | 1501 |
| AccB1I | GGYRCC | 2 cut(s) | 497, 1501 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3046 |
| AccBSI | CCGCTC | 1 cut(s) | 1735 |
| AccI | GTMKAC | 1 cut(s) | 1638 |
| AccIII | TCCGGA | 2 cut(s) | 1422, 1565 |
| AclI | AACGTT | 4 cut(s) | 182, 390, 1107, 2604 |
| AclWI | GGATC | 9 cut(s) | 1135, 1148, 1355, 1904, 2288, 2301, 2327, 2432, 2852 |
| AcoI | YGGCCR | 3 cut(s) | 1194, 1804, 1830 |
| AcsI | RAATTY | 2 cut(s) | 950, 2801 |
| AcuI | CTGAAG | 4 cut(s) | 1890, 1902, 2103, 2814 |
| AcyI | GRCGYC | 2 cut(s) | 1716, 2409 |
| AfaI | GTAC | 7 cut(s) | 83, 1238, 1503, 1863, 2652, 2841, 2910 |
| AfeI | AGCGCT | 3 cut(s) | 262, 856, 2197 |
| AgeI | ACCGGT | 1 cut(s) | 1045 |
| AgsI | TTSAA | 2 cut(s) | 258, 1691 |
| Alw21I | GWGCWC | 7 cut(s) | 281, 438, 1338, 1455, 1762, 2752, 2823 |
| AlwI | GGATC | 9 cut(s) | 1135, 1148, 1355, 1904, 2288, 2301, 2327, 2432, 2852 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2216 |
| Ama87I | CYCGRG | 3 cut(s) | 476, 874, 2363 |
| Aor13HI | TCCGGA | 2 cut(s) | 1422, 1565 |
| Aor51HI | AGCGCT | 3 cut(s) | 262, 856, 2197 |
| ApaI | GGGCCC | 2 cut(s) | 1060, 1621 |
| ApoI | RAATTY | 2 cut(s) | 950, 2801 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 101, 133, 707, 739, 1540, 1572 |
| AsiGI | ACCGGT | 1 cut(s) | 1045 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2178, 3147 |
| Asp718I | GGTACC | 1 cut(s) | 1501 |
| AsuC2I | CCSGG | 6 cut(s) | 477, 478, 899, 1769, 2277, 2733 |
| AsuHPI | GGTGA | 6 cut(s) | 364, 607, 1818, 2417, 2978, 3064 |
| AsuII | TTCGAA | 1 cut(s) | 1098 |
| AsuNHI | GCTAGC | 1 cut(s) | 3179 |
| AvaI | CYCGRG | 3 cut(s) | 476, 874, 2363 |
| AxyI | CCTNAGG | 3 cut(s) | 2289, 2487, 2556 |
| BaeGI | GKGCMC | 5 cut(s) | 502, 583, 1060, 1621, 2282 |
| BamHI | GGATCC | 2 cut(s) | 1140, 2293 |
| BanI | GGYRCC | 2 cut(s) | 497, 1501 |
| BanII | GRGCYC | 9 cut(s) | 792, 1038, 1060, 1455, 1621, 1762, 2364, 2752, 2823 |
| BauI | CACGAG | 3 cut(s) | 582, 648, 2615 |
| BbsI | GAAGAC | 2 cut(s) | 476, 1236 |
| Bbv12I | GWGCWC | 7 cut(s) | 281, 438, 1338, 1455, 1762, 2752, 2823 |
| BbvCI | CCTCAGC | 1 cut(s) | 2418 |
| BceAI | ACGGC | 4 cut(s) | 1023, 1036, 3072, 3117 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 268, 302, 1012, 1046 |
| BciVI | GTATCC | 1 cut(s) | 1686 |
| BcnI | CCSGG | 6 cut(s) | 477, 478, 899, 1769, 2277, 2733 |
| BfaI | CTAG | 4 cut(s) | 56, 590, 984, 3180 |
| BfmI | CTRYAG | 3 cut(s) | 1635, 1932, 2699 |
| BfoI | RGCGCY | 5 cut(s) | 264, 858, 2156, 2199, 2508 |
| BfuAI | ACCTGC | 3 cut(s) | 599, 2488, 2872 |
| BfuI | GTATCC | 1 cut(s) | 1686 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1485, 2489 |
| BglII | AGATCT | 1 cut(s) | 586 |
| BlpI | GCTNAGC | 3 cut(s) | 840, 2209, 2445 |
| BmcAI | AGTACT | 3 cut(s) | 83, 1238, 1863 |
| BmeT110I | CYCGRG | 3 cut(s) | 476, 874, 2363 |
| BmrI | ACTGGG | 3 cut(s) | 150, 469, 1624 |
| BmsI | GCATC | 6 cut(s) | 1077, 1099, 1510, 1791, 2333, 2575 |
| BmtI | GCTAGC | 1 cut(s) | 3183 |
| BmuI | ACTGGG | 3 cut(s) | 150, 469, 1624 |
| BpiI | GAAGAC | 2 cut(s) | 476, 1236 |
| BpmI | CTGGAG | 4 cut(s) | 2478, 2652, 2996, 3086 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2418 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 840, 2209, 2445 |
| Bpu14I | TTCGAA | 1 cut(s) | 1098 |
| BpuEI | CTTGAG | 4 cut(s) | 953, 2115, 2340, 2736 |
| BpuMI | CCSGG | 6 cut(s) | 477, 478, 899, 1769, 2277, 2733 |
| Bsa29I | ATCGAT | 4 cut(s) | 192, 380, 780, 2847 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2337 |
| BsaHI | GRCGYC | 2 cut(s) | 1716, 2409 |
| BsaI | GGTCTC | 1 cut(s) | 365 |
| BsaWI | WCCGGW | 5 cut(s) | 914, 1045, 1112, 1422, 1565 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1744, 1774, 2012, 2042 |
| Bse118I | RCCGGY | 5 cut(s) | 1045, 1192, 1576, 1828, 2368 |
| Bse1I | ACTGG | 9 cut(s) | 79, 156, 464, 470, 772, 1505, 1619, 2535, 3069 |
| Bse21I | CCTNAGG | 3 cut(s) | 2289, 2487, 2556 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2337 |
| BseAI | TCCGGA | 2 cut(s) | 1422, 1565 |
| BseCI | ATCGAT | 4 cut(s) | 192, 380, 780, 2847 |
| BseGI | GGATG | 5 cut(s) | 753, 1090, 1419, 3000, 3199 |
| BseJI | GATNNNNATC | 1 cut(s) | 2337 |
| BseNI | ACTGG | 9 cut(s) | 79, 156, 464, 470, 772, 1505, 1619, 2535, 3069 |
| BseRI | GAGGAG | 7 cut(s) | 287, 526, 958, 1752, 2435, 2601, 2655 |
| BseSI | GKGCMC | 5 cut(s) | 502, 583, 1060, 1621, 2282 |
| BseX3I | CGGCCG | 2 cut(s) | 1194, 1830 |
| BseYI | CCCAGC | 1 cut(s) | 103 |
| BsgI | GTGCAG | 5 cut(s) | 239, 946, 2246, 2289, 2853 |
| Bsh1285I | CGRYCG | 7 cut(s) | 915, 1197, 1733, 1833, 2301, 2862, 2947 |
| BshNI | GGYRCC | 2 cut(s) | 497, 1501 |
| BshTI | ACCGGT | 1 cut(s) | 1045 |
| BshVI | ATCGAT | 4 cut(s) | 192, 380, 780, 2847 |
| BsiEI | CGRYCG | 7 cut(s) | 915, 1197, 1733, 1833, 2301, 2862, 2947 |
| BsiHKAI | GWGCWC | 7 cut(s) | 281, 438, 1338, 1455, 1762, 2752, 2823 |
| BsiHKCI | CYCGRG | 3 cut(s) | 476, 874, 2363 |
| BsmBI | CGTCTC | 2 cut(s) | 566, 2383 |
| BsmI | GAATGC | 1 cut(s) | 607 |
| Bso31I | GGTCTC | 1 cut(s) | 365 |
| BsoBI | CYCGRG | 3 cut(s) | 476, 874, 2363 |
| Bsp119I | TTCGAA | 1 cut(s) | 1098 |
| Bsp120I | GGGCCC | 2 cut(s) | 1056, 1617 |
| Bsp13I | TCCGGA | 2 cut(s) | 1422, 1565 |
| Bsp1407I | TGTACA | 1 cut(s) | 2908 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 840, 2209, 2445 |
| Bsp19I | CCATGG | 1 cut(s) | 834 |
| Bsp68I | TCGCGA | 3 cut(s) | 570, 1227, 2931 |
| BspDI | ATCGAT | 4 cut(s) | 192, 380, 780, 2847 |
| BspEI | TCCGGA | 2 cut(s) | 1422, 1565 |
| BspMAI | CTGCAG | 1 cut(s) | 2703 |
| BspMI | ACCTGC | 3 cut(s) | 599, 2488, 2872 |
| BspOI | GCTAGC | 1 cut(s) | 3183 |
| BspPI | GGATC | 9 cut(s) | 1135, 1148, 1355, 1904, 2288, 2301, 2327, 2432, 2852 |
| BspQI | GCTCTTC | 2 cut(s) | 2122, 3069 |
| BspT104I | TTCGAA | 1 cut(s) | 1098 |
| BspT107I | GGYRCC | 2 cut(s) | 497, 1501 |
| BspTNI | GGTCTC | 1 cut(s) | 365 |
| BsrBI | CCGCTC | 1 cut(s) | 1735 |
| BsrFI | RCCGGY | 5 cut(s) | 1045, 1192, 1576, 1828, 2368 |
| BsrGI | TGTACA | 1 cut(s) | 2908 |
| BsrI | ACTGG | 9 cut(s) | 79, 156, 464, 470, 772, 1505, 1619, 2535, 3069 |
| BssAI | RCCGGY | 5 cut(s) | 1045, 1192, 1576, 1828, 2368 |
| BssNI | GRCGYC | 2 cut(s) | 1716, 2409 |
| BssSI | CACGAG | 3 cut(s) | 582, 648, 2615 |
| BssT1I | CCWWGG | 2 cut(s) | 834, 3033 |
| Bst2BI | CACGAG | 3 cut(s) | 582, 648, 2615 |
| Bst4CI | ACNGT | 4 cut(s) | 424, 1301, 1820, 1921 |
| Bst6I | CTCTTC | 2 cut(s) | 2122, 3069 |
| BstACI | GRCGYC | 2 cut(s) | 1716, 2409 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1865 |
| BstAUI | TGTACA | 1 cut(s) | 2908 |
| BstBI | TTCGAA | 1 cut(s) | 1098 |
| BstDSI | CCRYGG | 2 cut(s) | 211, 834 |
| BstF5I | GGATG | 5 cut(s) | 753, 1090, 1419, 3000, 3199 |
| BstH2I | RGCGCY | 5 cut(s) | 264, 858, 2156, 2199, 2508 |
| BstMCI | CGRYCG | 7 cut(s) | 915, 1197, 1733, 1833, 2301, 2862, 2947 |
| BstNSI | RCATGY | 1 cut(s) | 1294 |
| BstSFI | CTRYAG | 3 cut(s) | 1635, 1932, 2699 |
| BstSLI | GKGCMC | 5 cut(s) | 502, 583, 1060, 1621, 2282 |
| BstV2I | GAAGAC | 2 cut(s) | 476, 1236 |
| BstX2I | RGATCY | 3 cut(s) | 586, 1140, 2293 |
| BstYI | RGATCY | 3 cut(s) | 586, 1140, 2293 |
| BstZI | CGGCCG | 2 cut(s) | 1194, 1830 |
| Bsu15I | ATCGAT | 4 cut(s) | 192, 380, 780, 2847 |
| Bsu36I | CCTNAGG | 3 cut(s) | 2289, 2487, 2556 |
| BsuI | GTATCC | 1 cut(s) | 1686 |
| BsuTUI | ATCGAT | 4 cut(s) | 192, 380, 780, 2847 |
| BtgI | CCRYGG | 2 cut(s) | 211, 834 |
| BtgZI | GCGATG | 2 cut(s) | 2310, 3128 |
| BtsCI | GGATG | 5 cut(s) | 753, 1090, 1419, 3000, 3199 |
| BtsIMutI | CAGTG | 5 cut(s) | 163, 429, 765, 1825, 2790 |
| BtuMI | TCGCGA | 3 cut(s) | 570, 1227, 2931 |
| BveI | ACCTGC | 3 cut(s) | 599, 2488, 2872 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2216 |
| Cfr10I | RCCGGY | 5 cut(s) | 1045, 1192, 1576, 1828, 2368 |
| Cfr42I | CCGCGG | 1 cut(s) | 214 |
| Cfr9I | CCCGGG | 1 cut(s) | 476 |
| ClaI | ATCGAT | 4 cut(s) | 192, 380, 780, 2847 |
| CseI | GACGC | 4 cut(s) | 583, 1640, 1724, 3185 |
| Csp6I | GTAC | 7 cut(s) | 82, 1237, 1502, 1862, 2651, 2840, 2909 |
| CspAI | ACCGGT | 1 cut(s) | 1045 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 246, 281, 2145, 2180 |
| CviAII | CATG | 8 cut(s) | 800, 835, 1069, 1291, 1343, 1924, 1964, 3218 |
| CviQI | GTAC | 7 cut(s) | 82, 1237, 1502, 1862, 2651, 2840, 2909 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2712 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2712 |
| EaeI | YGGCCR | 3 cut(s) | 1194, 1804, 1830 |
| EagI | CGGCCG | 2 cut(s) | 1194, 1830 |
| Eam1104I | CTCTTC | 2 cut(s) | 2122, 3069 |
| EarI | CTCTTC | 2 cut(s) | 2122, 3069 |
| EciI | GGCGGA | 2 cut(s) | 1154, 1385 |
| Ecl136II | GAGCTC | 4 cut(s) | 1453, 1760, 2750, 2821 |
| EclXI | CGGCCG | 2 cut(s) | 1194, 1830 |
| Eco130I | CCWWGG | 2 cut(s) | 834, 3033 |
| Eco147I | AGGCCT | 1 cut(s) | 1726 |
| Eco24I | GRGCYC | 9 cut(s) | 792, 1038, 1060, 1455, 1621, 1762, 2364, 2752, 2823 |
| Eco31I | GGTCTC | 1 cut(s) | 365 |
| Eco32I | GATATC | 1 cut(s) | 1177 |
| Eco47III | AGCGCT | 3 cut(s) | 262, 856, 2197 |
| Eco52I | CGGCCG | 2 cut(s) | 1194, 1830 |
| Eco53kI | GAGCTC | 4 cut(s) | 1453, 1760, 2750, 2821 |
| Eco57I | CTGAAG | 4 cut(s) | 1890, 1902, 2103, 2814 |
| Eco81I | CCTNAGG | 3 cut(s) | 2289, 2487, 2556 |
| Eco88I | CYCGRG | 3 cut(s) | 476, 874, 2363 |
| EcoICRI | GAGCTC | 4 cut(s) | 1453, 1760, 2750, 2821 |
| EcoO109I | RGGNCCY | 6 cut(s) | 1056, 1057, 2168, 2390, 2714, 2965 |
| EcoRI | GAATTC | 1 cut(s) | 2801 |
| EcoRV | GATATC | 1 cut(s) | 1177 |
| EcoT14I | CCWWGG | 2 cut(s) | 834, 3033 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 1092 |
| EcoT38I | GRGCYC | 9 cut(s) | 792, 1038, 1060, 1455, 1621, 1762, 2364, 2752, 2823 |
| ErhI | CCWWGG | 2 cut(s) | 834, 3033 |
| Esp3I | CGTCTC | 2 cut(s) | 566, 2383 |
| FaeI | CATG | 8 cut(s) | 803, 838, 1072, 1294, 1346, 1927, 1967, 3221 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1312, 1344 |
| FatI | CATG | 8 cut(s) | 799, 834, 1068, 1290, 1342, 1923, 1963, 3217 |
| FauNDI | CATATG | 1 cut(s) | 2101 |
| FblI | GTMKAC | 1 cut(s) | 1638 |
| FokI | GGATG | 5 cut(s) | 740, 1077, 1406, 2987, 3206 |
| FriOI | GRGCYC | 9 cut(s) | 792, 1038, 1060, 1455, 1621, 1762, 2364, 2752, 2823 |
| FspBI | CTAG | 4 cut(s) | 56, 590, 984, 3180 |
| GsaI | CCCAGC | 1 cut(s) | 107 |
| GsuI | CTGGAG | 4 cut(s) | 2478, 2652, 2996, 3086 |
| HaeII | RGCGCY | 5 cut(s) | 264, 858, 2156, 2199, 2508 |
| HgaI | GACGC | 4 cut(s) | 583, 1640, 1724, 3185 |
| Hin1I | GRCGYC | 2 cut(s) | 1716, 2409 |
| Hin1II | CATG | 8 cut(s) | 803, 838, 1072, 1294, 1346, 1927, 1967, 3221 |
| HincII | GTYRAC | 1 cut(s) | 820 |
| HindII | GTYRAC | 1 cut(s) | 820 |
| HphI | GGTGA | 6 cut(s) | 364, 607, 1818, 2417, 2978, 3064 |
| Hpy166II | GTNNAC | 6 cut(s) | 268, 372, 820, 1559, 1639, 2374 |
| Hpy8I | GTNNAC | 6 cut(s) | 268, 372, 820, 1559, 1639, 2374 |
| Hpy99I | CGWCG | 4 cut(s) | 1087, 1910, 2088, 2552 |
| HpyCH4III | ACNGT | 4 cut(s) | 424, 1301, 1820, 1921 |
| HpyCH4IV | ACGT | 9 cut(s) | 35, 121, 182, 368, 390, 1107, 2376, 2409, 2604 |
| HpySE526I | ACGT | 9 cut(s) | 35, 121, 182, 368, 390, 1107, 2376, 2409, 2604 |
| Hsp92I | GRCGYC | 2 cut(s) | 1716, 2409 |
| Hsp92II | CATG | 8 cut(s) | 803, 838, 1072, 1294, 1346, 1927, 1967, 3221 |
| Kpn2I | TCCGGA | 2 cut(s) | 1422, 1565 |
| KpnI | GGTACC | 1 cut(s) | 1505 |
| KroI | GCCGGC | 2 cut(s) | 1192, 1576 |
| KroNI | GCCGGC | 2 cut(s) | 1194, 1578 |
| KspI | CCGCGG | 1 cut(s) | 214 |
| LguI | GCTCTTC | 2 cut(s) | 2122, 3069 |
| LmnI | GCTCC | 9 cut(s) | 452, 1341, 1465, 1740, 1765, 2020, 2497, 2668, 3067 |
| LweI | GCATC | 6 cut(s) | 1077, 1099, 1510, 1791, 2333, 2575 |
| MaeI | CTAG | 4 cut(s) | 56, 590, 984, 3180 |
| MaeII | ACGT | 9 cut(s) | 35, 121, 182, 368, 390, 1107, 2376, 2409, 2604 |
| MbiI | CCGCTC | 1 cut(s) | 1735 |
| MfeI | CAATTG | 3 cut(s) | 1202, 1496, 3041 |
| MflI | RGATCY | 3 cut(s) | 586, 1140, 2293 |
| MlyI | GAGTC | 6 cut(s) | 242, 466, 806, 2682, 2700, 2927 |
| MmeI | TCCRAC | 2 cut(s) | 729, 1363 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 1092 |
| MroI | TCCGGA | 2 cut(s) | 1422, 1565 |
| MroNI | GCCGGC | 2 cut(s) | 1192, 1576 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2178, 3147 |
| MseI | TTAA | 1 cut(s) | 1307 |
| MspA1I | CMGCKG | 7 cut(s) | 213, 1682, 1835, 1880, 2123, 2435, 2453 |
| MteI | GCGCNGCGC | 1 cut(s) | 1796 |
| MunI | CAATTG | 3 cut(s) | 1202, 1496, 3041 |
| Mva1269I | GAATGC | 1 cut(s) | 607 |
| NaeI | GCCGGC | 2 cut(s) | 1194, 1578 |
| NciI | CCSGG | 6 cut(s) | 477, 478, 899, 1769, 2277, 2733 |
| NcoI | CCATGG | 1 cut(s) | 834 |
| NdeI | CATATG | 1 cut(s) | 2101 |
| NgoMIV | GCCGGC | 2 cut(s) | 1192, 1576 |
| NheI | GCTAGC | 1 cut(s) | 3179 |
| NlaIII | CATG | 8 cut(s) | 803, 838, 1072, 1294, 1346, 1927, 1967, 3221 |
| NmeAIII | GCCGAG | 1 cut(s) | 1459 |
| NmuCI | GTSAC | 6 cut(s) | 117, 239, 289, 1301, 2405, 3052 |
| NruI | TCGCGA | 3 cut(s) | 570, 1227, 2931 |
| NsiI | ATGCAT | 2 cut(s) | 6, 1092 |
| NspI | RCATGY | 1 cut(s) | 1294 |
| NspV | TTCGAA | 1 cut(s) | 1098 |
| PasI | CCCWGGG | 1 cut(s) | 1974 |
| PceI | AGGCCT | 1 cut(s) | 1726 |
| PciSI | GCTCTTC | 2 cut(s) | 2122, 3069 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 1104, 1599, 1608, 2382, 2953 |
| PctI | GAATGC | 1 cut(s) | 607 |
| PdiI | GCCGGC | 2 cut(s) | 1194, 1578 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2178, 3147 |
| PflFI | GACNNNGTC | 1 cut(s) | 815 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3046 |
| PfoI | TCCNGGA | 1 cut(s) | 2668 |
| PinAI | ACCGGT | 1 cut(s) | 1045 |
| Ple19I | CGATCG | 2 cut(s) | 2301, 2947 |
| PleI | GAGTC | 6 cut(s) | 241, 466, 806, 2681, 2700, 2927 |
| PpsI | GAGTC | 6 cut(s) | 241, 466, 806, 2681, 2700, 2927 |
| PpuMI | RGGWCCY | 3 cut(s) | 2168, 2714, 2965 |
| Psp124BI | GAGCTC | 4 cut(s) | 1455, 1762, 2752, 2823 |
| Psp1406I | AACGTT | 4 cut(s) | 182, 390, 1107, 2604 |
| Psp5II | RGGWCCY | 3 cut(s) | 2168, 2714, 2965 |
| PspFI | CCCAGC | 1 cut(s) | 103 |
| PspOMI | GGGCCC | 2 cut(s) | 1056, 1617 |
| PspPPI | RGGWCCY | 3 cut(s) | 2168, 2714, 2965 |
| PstI | CTGCAG | 1 cut(s) | 2703 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2216 |
| PsuI | RGATCY | 3 cut(s) | 586, 1140, 2293 |
| PsyI | GACNNNGTC | 1 cut(s) | 815 |
| PvuI | CGATCG | 2 cut(s) | 2301, 2947 |
| PvuII | CAGCTG | 2 cut(s) | 1880, 2123 |
| RruI | TCGCGA | 3 cut(s) | 570, 1227, 2931 |
| RsaI | GTAC | 7 cut(s) | 83, 1238, 1503, 1863, 2652, 2841, 2910 |
| RsaNI | GTAC | 7 cut(s) | 82, 1237, 1502, 1862, 2651, 2840, 2909 |
| SacI | GAGCTC | 4 cut(s) | 1455, 1762, 2752, 2823 |
| SacII | CCGCGG | 1 cut(s) | 214 |
| SapI | GCTCTTC | 2 cut(s) | 2122, 3069 |
| SaqAI | TTAA | 1 cut(s) | 1307 |
| ScaI | AGTACT | 3 cut(s) | 83, 1238, 1863 |
| SchI | GAGTC | 6 cut(s) | 242, 466, 806, 2682, 2700, 2927 |
| SfaNI | GCATC | 6 cut(s) | 1077, 1099, 1510, 1791, 2333, 2575 |
| SfcI | CTRYAG | 3 cut(s) | 1635, 1932, 2699 |
| Sfr303I | CCGCGG | 1 cut(s) | 214 |
| SfuI | TTCGAA | 1 cut(s) | 1098 |
| SgrBI | CCGCGG | 1 cut(s) | 214 |
| SmaI | CCCGGG | 1 cut(s) | 478 |
| SmlI | CTYRAG | 4 cut(s) | 932, 2130, 2355, 2751 |
| SmoI | CTYRAG | 4 cut(s) | 932, 2130, 2355, 2751 |
| SseBI | AGGCCT | 1 cut(s) | 1726 |
| SspMI | CTAG | 4 cut(s) | 56, 590, 984, 3180 |
| SstI | GAGCTC | 4 cut(s) | 1455, 1762, 2752, 2823 |
| StuI | AGGCCT | 1 cut(s) | 1726 |
| StyI | CCWWGG | 2 cut(s) | 834, 3033 |
| TaaI | ACNGT | 4 cut(s) | 424, 1301, 1820, 1921 |
| TaiI | ACGT | 9 cut(s) | 38, 124, 185, 371, 393, 1110, 2379, 2412, 2607 |
| TaqII | GACCGA | 3 cut(s) | 1544, 1661, 2016 |
| TatI | WGTACW | 4 cut(s) | 81, 1236, 1861, 2908 |
| Tru1I | TTAA | 1 cut(s) | 1307 |
| Tru9I | TTAA | 1 cut(s) | 1307 |
| TscAI | CASTG | 5 cut(s) | 163, 429, 772, 1825, 2797 |
| TseFI | GTSAC | 6 cut(s) | 117, 239, 289, 1301, 2405, 3052 |
| Tsp45I | GTSAC | 6 cut(s) | 117, 239, 289, 1301, 2405, 3052 |
| TspDTI | ATGAA | 8 cut(s) | 858, 943, 2001, 2265, 2361, 2697, 2865, 3210 |
| TspGWI | ACGGA | 2 cut(s) | 1662, 2857 |
| TspMI | CCCGGG | 1 cut(s) | 476 |
| TspRI | CASTG | 5 cut(s) | 163, 429, 772, 1825, 2797 |
| Tth111I | GACNNNGTC | 1 cut(s) | 815 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3046 |
| XapI | RAATTY | 2 cut(s) | 950, 2801 |
| XceI | RCATGY | 1 cut(s) | 1294 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 647, 3040 |
| XmaI | CCCGGG | 1 cut(s) | 476 |
| XmiI | GTMKAC | 1 cut(s) | 1638 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2178, 3147 |
| XspI | CTAG | 4 cut(s) | 56, 590, 984, 3180 |
| ZraI | GACGTC | 1 cut(s) | 2410 |
| ZrmI | AGTACT | 3 cut(s) | 83, 1238, 1863 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 1092 |