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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 579 |
| AccI | GTMKAC | 1 cut(s) | 471 |
| AccII | CGCG | 4 cut(s) | 228, 427, 596, 638 |
| AccIII | TCCGGA | 1 cut(s) | 547 |
| AciI | CCGC | 7 cut(s) | 34, 188, 228, 402, 502, 636, 641 |
| AclWI | GGATC | 3 cut(s) | 512, 560, 573 |
| AcoI | YGGCCR | 1 cut(s) | 276 |
| AcyI | GRCGYC | 1 cut(s) | 134 |
| AfeI | AGCGCT | 1 cut(s) | 648 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 160, 194, 255, 260 |
| AgeI | ACCGGT | 1 cut(s) | 439 |
| AgsI | TTSAA | 2 cut(s) | 110, 158 |
| AleI | CACNNNNGTG | 1 cut(s) | 479 |
| AluBI | AGCT | 2 cut(s) | 82, 179 |
| AluI | AGCT | 2 cut(s) | 82, 179 |
| Alw21I | GWGCWC | 3 cut(s) | 84, 117, 181 |
| Alw26I | GTCTC | 1 cut(s) | 27 |
| AlwI | GGATC | 3 cut(s) | 512, 560, 573 |
| Ama87I | CYCGRG | 3 cut(s) | 83, 243, 627 |
| Aor13HI | TCCGGA | 1 cut(s) | 547 |
| Aor51HI | AGCGCT | 1 cut(s) | 648 |
| AoxI | GGCC | 5 cut(s) | 143, 246, 276, 368, 660 |
| ApeKI | GCWGC | 1 cut(s) | 575 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 44, 76 |
| AsiGI | ACCGGT | 1 cut(s) | 439 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 456 |
| AspLEI | GCGC | 5 cut(s) | 433, 580, 592, 640, 649 |
| AspS9I | GGNCC | 4 cut(s) | 167, 246, 368, 660 |
| AsuC2I | CCSGG | 2 cut(s) | 192, 385 |
| AsuHPI | GGTGA | 1 cut(s) | 591 |
| AvaI | CYCGRG | 3 cut(s) | 83, 243, 627 |
| AvaII | GGWCC | 1 cut(s) | 167 |
| BamHI | GGATCC | 1 cut(s) | 565 |
| BanII | GRGCYC | 2 cut(s) | 84, 181 |
| Bbv12I | GWGCWC | 3 cut(s) | 84, 117, 181 |
| BbvI | GCAGC | 1 cut(s) | 562 |
| BccI | CCATC | 2 cut(s) | 379, 472 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 632, 666 |
| BciVI | GTATCC | 1 cut(s) | 232 |
| BcnI | CCSGG | 2 cut(s) | 192, 385 |
| BcoDI | GTCTC | 1 cut(s) | 27 |
| BfoI | RGCGCY | 3 cut(s) | 434, 593, 650 |
| BfuI | GTATCC | 1 cut(s) | 232 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 142 |
| BisI | GCNGC | 2 cut(s) | 576, 641 |
| BlsI | GCNGC | 2 cut(s) | 577, 642 |
| Bme1390I | CCNGG | 2 cut(s) | 192, 385 |
| Bme18I | GGWCC | 1 cut(s) | 167 |
| BmeT110I | CYCGRG | 3 cut(s) | 83, 243, 627 |
| BmgT120I | GGNCC | 4 cut(s) | 167, 246, 368, 660 |
| BmiI | GGNNCC | 2 cut(s) | 447, 567 |
| BmrFI | CCNGG | 2 cut(s) | 192, 385 |
| BmsI | GCATC | 1 cut(s) | 207 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 166, 198, 663 |
| BpuEI | CTTGAG | 3 cut(s) | 204, 393, 581 |
| BpuMI | CCSGG | 2 cut(s) | 192, 385 |
| BsaBI | GATNNNNATC | 1 cut(s) | 609 |
| BsaHI | GRCGYC | 1 cut(s) | 134 |
| BsaI | GGTCTC | 1 cut(s) | 27 |
| BsaJI | CCNNGG | 3 cut(s) | 254, 283, 384 |
| BsaWI | WCCGGW | 3 cut(s) | 46, 439, 547 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 163, 193 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 160, 194, 255, 260 |
| Bse118I | RCCGGY | 2 cut(s) | 439, 586 |
| Bse8I | GATNNNNATC | 1 cut(s) | 609 |
| BseAI | TCCGGA | 1 cut(s) | 547 |
| BseDI | CCNNGG | 3 cut(s) | 254, 283, 384 |
| BseGI | GGATG | 2 cut(s) | 55, 487 |
| BseJI | GATNNNNATC | 1 cut(s) | 609 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 160, 194, 255, 260 |
| BseRI | GAGGAG | 2 cut(s) | 171, 453 |
| BseXI | GCAGC | 1 cut(s) | 562 |
| Bsh1236I | CGCG | 4 cut(s) | 228, 427, 596, 638 |
| Bsh1285I | CGRYCG | 3 cut(s) | 232, 283, 573 |
| BshFI | GGCC | 5 cut(s) | 145, 248, 278, 370, 662 |
| BshTI | ACCGGT | 1 cut(s) | 439 |
| BsiEI | CGRYCG | 3 cut(s) | 232, 283, 573 |
| BsiHKAI | GWGCWC | 3 cut(s) | 84, 117, 181 |
| BsiHKCI | CYCGRG | 3 cut(s) | 83, 243, 627 |
| BsiSI | CCGG | 7 cut(s) | 37, 47, 192, 384, 440, 548, 587 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 160, 194, 255, 260 |
| BsmAI | GTCTC | 1 cut(s) | 27 |
| BsmI | GAATGC | 1 cut(s) | 543 |
| BsnI | GGCC | 5 cut(s) | 145, 248, 278, 370, 662 |
| Bso31I | GGTCTC | 1 cut(s) | 27 |
| BsoBI | CYCGRG | 3 cut(s) | 83, 243, 627 |
| Bsp1286I | GDGCHC | 3 cut(s) | 84, 117, 181 |
| Bsp13I | TCCGGA | 1 cut(s) | 547 |
| Bsp143I | GATC | 4 cut(s) | 504, 565, 570, 604 |
| Bsp68I | TCGCGA | 1 cut(s) | 427 |
| BspACI | CCGC | 7 cut(s) | 34, 188, 228, 402, 502, 636, 641 |
| BspANI | GGCC | 5 cut(s) | 145, 248, 278, 370, 662 |
| BspEI | TCCGGA | 1 cut(s) | 547 |
| BspFNI | CGCG | 4 cut(s) | 228, 427, 596, 638 |
| BspLI | GGNNCC | 2 cut(s) | 447, 567 |
| BspPI | GGATC | 3 cut(s) | 512, 560, 573 |
| BspTNI | GGTCTC | 1 cut(s) | 27 |
| BsrFI | RCCGGY | 2 cut(s) | 439, 586 |
| BssAI | RCCGGY | 2 cut(s) | 439, 586 |
| BssECI | CCNNGG | 3 cut(s) | 254, 283, 384 |
| BssMI | GATC | 4 cut(s) | 504, 565, 570, 604 |
| BssNI | GRCGYC | 1 cut(s) | 134 |
| Bst4CI | ACNGT | 1 cut(s) | 284 |
| Bst6I | CTCTTC | 2 cut(s) | 65, 527 |
| BstACI | GRCGYC | 1 cut(s) | 134 |
| BstC8I | GCNNGC | 7 cut(s) | 80, 117, 121, 188, 429, 594, 645 |
| BstDSI | CCRYGG | 2 cut(s) | 254, 283 |
| BstF5I | GGATG | 2 cut(s) | 55, 487 |
| BstFNI | CGCG | 4 cut(s) | 228, 427, 596, 638 |
| BstH2I | RGCGCY | 3 cut(s) | 434, 593, 650 |
| BstHHI | GCGC | 5 cut(s) | 433, 580, 592, 640, 649 |
| BstKTI | GATC | 4 cut(s) | 507, 568, 573, 607 |
| BstMAI | GTCTC | 1 cut(s) | 27 |
| BstMBI | GATC | 4 cut(s) | 504, 565, 570, 604 |
| BstMCI | CGRYCG | 3 cut(s) | 232, 283, 573 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 142, 428, 644, 646 |
| BstSCI | CCNGG | 2 cut(s) | 190, 383 |
| BstUI | CGCG | 4 cut(s) | 228, 427, 596, 638 |
| BstV1I | GCAGC | 1 cut(s) | 562 |
| BstX2I | RGATCY | 1 cut(s) | 565 |
| BstYI | RGATCY | 1 cut(s) | 565 |
| BsuI | GTATCC | 1 cut(s) | 232 |
| BsuRI | GGCC | 5 cut(s) | 145, 248, 278, 370, 662 |
| BtgI | CCRYGG | 2 cut(s) | 254, 283 |
| BtsCI | GGATG | 2 cut(s) | 55, 487 |
| BtuMI | TCGCGA | 1 cut(s) | 427 |
| Cac8I | GCNNGC | 7 cut(s) | 80, 117, 121, 188, 429, 594, 645 |
| CfoI | GCGC | 5 cut(s) | 433, 580, 592, 640, 649 |
| Cfr10I | RCCGGY | 2 cut(s) | 439, 586 |
| Cfr13I | GGNCC | 4 cut(s) | 167, 246, 368, 660 |
| CseI | GACGC | 3 cut(s) | 142, 560, 585 |
| CspAI | ACCGGT | 1 cut(s) | 439 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 423, 458 |
| CviJI | RGCY | 8 cut(s) | 82, 145, 179, 248, 278, 302, 370, 662 |
| CviKI_1 | RGCY | 8 cut(s) | 82, 145, 179, 248, 278, 302, 370, 662 |
| DpnI | GATC | 4 cut(s) | 506, 567, 572, 606 |
| DpnII | GATC | 4 cut(s) | 504, 565, 570, 604 |
| EaeI | YGGCCR | 1 cut(s) | 276 |
| Eam1104I | CTCTTC | 2 cut(s) | 65, 527 |
| EarI | CTCTTC | 2 cut(s) | 65, 527 |
| Ecl136II | GAGCTC | 2 cut(s) | 82, 179 |
| Eco147I | AGGCCT | 1 cut(s) | 145 |
| Eco24I | GRGCYC | 2 cut(s) | 84, 181 |
| Eco31I | GGTCTC | 1 cut(s) | 27 |
| Eco47I | GGWCC | 1 cut(s) | 167 |
| Eco47III | AGCGCT | 1 cut(s) | 648 |
| Eco53kI | GAGCTC | 2 cut(s) | 82, 179 |
| Eco88I | CYCGRG | 3 cut(s) | 83, 243, 627 |
| EcoICRI | GAGCTC | 2 cut(s) | 82, 179 |
| EcoO109I | RGGNCCY | 1 cut(s) | 660 |
| EcoT38I | GRGCYC | 2 cut(s) | 84, 181 |
| FaiI | YATR | 5 cut(s) | 94, 306, 333, 379, 509 |
| FauI | CCCGC | 2 cut(s) | 195, 643 |
| FblI | GTMKAC | 1 cut(s) | 471 |
| Fnu4HI | GCNGC | 2 cut(s) | 576, 641 |
| FokI | GGATG | 2 cut(s) | 62, 474 |
| FriOI | GRGCYC | 2 cut(s) | 84, 181 |
| Fsp4HI | GCNGC | 2 cut(s) | 576, 641 |
| FspI | TGCGCA | 1 cut(s) | 579 |
| GlaI | GCGC | 5 cut(s) | 432, 579, 591, 639, 648 |
| GluI | GCNGC | 2 cut(s) | 576, 641 |
| HaeII | RGCGCY | 3 cut(s) | 434, 593, 650 |
| HaeIII | GGCC | 5 cut(s) | 145, 248, 278, 370, 662 |
| HapII | CCGG | 7 cut(s) | 37, 47, 192, 384, 440, 548, 587 |
| HgaI | GACGC | 3 cut(s) | 142, 560, 585 |
| HhaI | GCGC | 5 cut(s) | 433, 580, 592, 640, 649 |
| Hin1I | GRCGYC | 1 cut(s) | 134 |
| Hin6I | GCGC | 5 cut(s) | 431, 578, 590, 638, 647 |
| HinP1I | GCGC | 5 cut(s) | 431, 578, 590, 638, 647 |
| HincII | GTYRAC | 2 cut(s) | 31, 472 |
| HindII | GTYRAC | 2 cut(s) | 31, 472 |
| HinfI | GANTC | 1 cut(s) | 40 |
| HpaII | CCGG | 7 cut(s) | 37, 47, 192, 384, 440, 548, 587 |
| HphI | GGTGA | 1 cut(s) | 591 |
| Hpy166II | GTNNAC | 3 cut(s) | 31, 212, 472 |
| Hpy188I | TCNGA | 4 cut(s) | 167, 238, 570, 654 |
| Hpy188III | TCNNGA | 7 cut(s) | 85, 209, 221, 426, 548, 614, 629 |
| Hpy8I | GTNNAC | 3 cut(s) | 31, 212, 472 |
| Hpy99I | CGWCG | 1 cut(s) | 473 |
| HpyAV | CCTTC | 4 cut(s) | 164, 254, 360, 383 |
| HpyCH4III | ACNGT | 1 cut(s) | 284 |
| HpyCH4V | TGCA | 1 cut(s) | 541 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 142, 428, 644, 646 |
| Hsp92I | GRCGYC | 1 cut(s) | 134 |
| HspAI | GCGC | 5 cut(s) | 431, 578, 590, 638, 647 |
| Kpn2I | TCCGGA | 1 cut(s) | 547 |
| Kzo9I | GATC | 4 cut(s) | 504, 565, 570, 604 |
| LmnI | GCTCC | 1 cut(s) | 184 |
| LpnPI | CCDG | 9 cut(s) | 50, 60, 205, 334, 397, 453, 561, 600, 676 |
| Lsp1109I | GCAGC | 1 cut(s) | 562 |
| LweI | GCATC | 1 cut(s) | 207 |
| MaeIII | GTNAC | 2 cut(s) | 362, 597 |
| MalI | GATC | 4 cut(s) | 506, 567, 572, 606 |
| MboI | GATC | 4 cut(s) | 504, 565, 570, 604 |
| MboII | GAAGA | 3 cut(s) | 52, 449, 544 |
| MflI | RGATCY | 1 cut(s) | 565 |
| MhlI | GDGCHC | 3 cut(s) | 84, 117, 181 |
| MluCI | AATT | 2 cut(s) | 204, 313 |
| MlyI | GAGTC | 1 cut(s) | 34 |
| MmeI | TCCRAC | 1 cut(s) | 145 |
| MroI | TCCGGA | 1 cut(s) | 547 |
| MroXI | GAANNNNTTC | 1 cut(s) | 456 |
| MslI | CAYNNNNRTG | 1 cut(s) | 479 |
| MspI | CCGG | 7 cut(s) | 37, 47, 192, 384, 440, 548, 587 |
| MspR9I | CCNGG | 2 cut(s) | 192, 385 |
| Mva1269I | GAATGC | 1 cut(s) | 543 |
| MvnI | CGCG | 4 cut(s) | 228, 427, 596, 638 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 142, 428, 644, 646 |
| NciI | CCSGG | 2 cut(s) | 192, 385 |
| NdeII | GATC | 4 cut(s) | 504, 565, 570, 604 |
| NlaIV | GGNNCC | 2 cut(s) | 447, 567 |
| NmuCI | GTSAC | 2 cut(s) | 362, 597 |
| NruI | TCGCGA | 1 cut(s) | 427 |
| NsbI | TGCGCA | 1 cut(s) | 579 |
| OliI | CACNNNNGTG | 1 cut(s) | 479 |
| PaeR7I | CTCGAG | 1 cut(s) | 627 |
| PceI | AGGCCT | 1 cut(s) | 145 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 600 |
| PctI | GAATGC | 1 cut(s) | 543 |
| PdmI | GAANNNNTTC | 1 cut(s) | 456 |
| PinAI | ACCGGT | 1 cut(s) | 439 |
| PkrI | GCNGC | 2 cut(s) | 577, 642 |
| Ple19I | CGATCG | 1 cut(s) | 573 |
| PleI | GAGTC | 1 cut(s) | 34 |
| PpsI | GAGTC | 1 cut(s) | 34 |
| Psp124BI | GAGCTC | 2 cut(s) | 84, 181 |
| PspN4I | GGNNCC | 2 cut(s) | 447, 567 |
| PspPI | GGNCC | 4 cut(s) | 167, 246, 368, 660 |
| PsuI | RGATCY | 1 cut(s) | 565 |
| PvuI | CGATCG | 1 cut(s) | 573 |
| RruI | TCGCGA | 1 cut(s) | 427 |
| RseI | CAYNNNNRTG | 1 cut(s) | 479 |
| SacI | GAGCTC | 2 cut(s) | 84, 181 |
| SalI | GTCGAC | 1 cut(s) | 470 |
| SatI | GCNGC | 2 cut(s) | 576, 641 |
| Sau3AI | GATC | 4 cut(s) | 504, 565, 570, 604 |
| Sau96I | GGNCC | 4 cut(s) | 167, 246, 368, 660 |
| SchI | GAGTC | 1 cut(s) | 34 |
| ScrFI | CCNGG | 2 cut(s) | 192, 385 |
| SduI | GDGCHC | 3 cut(s) | 84, 117, 181 |
| SetI | ASST | 7 cut(s) | 23, 84, 172, 181, 220, 394, 676 |
| SfaNI | GCATC | 1 cut(s) | 207 |
| Sfr274I | CTCGAG | 1 cut(s) | 627 |
| SgrAI | CRCCGGYG | 2 cut(s) | 439, 586 |
| SinI | GGWCC | 1 cut(s) | 167 |
| SlaI | CTCGAG | 1 cut(s) | 627 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 479 |
| SmlI | CTYRAG | 4 cut(s) | 219, 408, 560, 627 |
| SmoI | CTYRAG | 4 cut(s) | 219, 408, 560, 627 |
| Sse9I | AATT | 2 cut(s) | 204, 313 |
| SseBI | AGGCCT | 1 cut(s) | 145 |
| SsiI | CCGC | 7 cut(s) | 34, 188, 228, 402, 502, 636, 641 |
| SstI | GAGCTC | 2 cut(s) | 84, 181 |
| StuI | AGGCCT | 1 cut(s) | 145 |
| StyD4I | CCNGG | 2 cut(s) | 190, 383 |
| TaaI | ACNGT | 1 cut(s) | 284 |
| TaqI | TCGA | 4 cut(s) | 128, 471, 521, 628 |
| TasI | AATT | 2 cut(s) | 204, 313 |
| TauI | GCSGC | 1 cut(s) | 643 |
| TseFI | GTSAC | 2 cut(s) | 362, 597 |
| TseI | GCWGC | 1 cut(s) | 575 |
| Tsp45I | GTSAC | 2 cut(s) | 362, 597 |
| TspDTI | ATGAA | 4 cut(s) | 282, 384, 476, 539 |
| TspGWI | ACGGA | 1 cut(s) | 544 |
| VpaK11BI | GGWCC | 1 cut(s) | 167 |
| XhoI | CTCGAG | 1 cut(s) | 627 |
| XmiI | GTMKAC | 1 cut(s) | 471 |
| XmnI | GAANNNNTTC | 1 cut(s) | 456 |